Wall clock time and date at job start Wed Apr 1 2020 03:56:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45206 * 1 3 3 C 1.34228 * 117.00402 * 2 1 4 4 O 1.20827 * 119.99454 * 359.97438 * 3 2 1 5 5 C 1.50698 * 120.00244 * 179.97438 * 3 2 1 6 6 H 1.09000 * 115.49185 * 325.38539 * 5 3 2 7 7 C 1.53002 * 117.44023 * 110.75723 * 5 3 2 8 8 H 1.09002 * 119.54276 * 355.88860 * 7 5 3 9 9 C 1.53989 * 118.30996 * 199.13522 * 7 5 3 10 10 N 1.48147 * 104.81763 * 273.09216 * 9 7 5 11 11 C 1.34775 * 127.83578 * 219.53706 * 10 9 7 12 12 O 1.21281 * 120.00268 * 179.68135 * 11 10 9 13 13 C 1.50707 * 120.00043 * 359.67386 * 11 10 9 14 14 C 1.50693 * 109.46922 * 180.02562 * 13 11 10 15 15 C 1.38327 * 119.97031 * 270.25605 * 14 13 11 16 16 C 1.38273 * 120.13863 * 180.25878 * 15 14 13 17 17 C 1.38120 * 120.07060 * 359.49027 * 16 15 14 18 18 C 1.38854 * 119.93206 * 0.25420 * 17 16 15 19 19 O 1.35751 * 120.07482 * 180.02562 * 18 17 16 20 20 C 1.34834 * 116.99708 * 354.46943 * 19 18 17 21 21 H 1.08003 * 119.99800 * 5.05492 * 20 19 18 22 22 C 1.38650 * 119.99974 * 185.05630 * 20 19 18 23 23 N 1.31557 * 120.00237 * 359.97438 * 22 20 19 24 24 Si 1.86803 * 119.99852 * 179.97438 * 22 20 19 25 25 H 1.48502 * 109.47147 * 89.99613 * 24 22 20 26 26 H 1.48498 * 109.47090 * 209.99899 * 24 22 20 27 27 H 1.48498 * 109.47306 * 329.99882 * 24 22 20 28 28 C 1.38085 * 119.96576 * 90.00437 * 14 13 11 29 29 C 1.48142 * 104.32308 * 39.27315 * 10 9 7 30 30 C 1.52996 * 117.44208 * 179.97438 * 5 3 2 31 31 H 1.08995 * 120.26200 * 3.83403 * 30 5 3 32 32 H 1.08999 * 109.47373 * 180.02562 * 1 2 3 33 33 H 1.08997 * 109.47228 * 300.00654 * 1 2 3 34 34 H 1.09001 * 109.46323 * 60.00334 * 1 2 3 35 35 H 1.08998 * 110.35558 * 154.21411 * 9 7 5 36 36 H 1.09005 * 110.26228 * 31.91587 * 9 7 5 37 37 H 1.09002 * 109.46878 * 60.00571 * 13 11 10 38 38 H 1.09001 * 109.47247 * 300.00667 * 13 11 10 39 39 H 1.08003 * 119.92553 * 0.02562 * 15 14 13 40 40 H 1.07998 * 119.96577 * 179.76472 * 16 15 14 41 41 H 1.08003 * 120.03675 * 180.23345 * 17 16 15 42 42 H 0.96997 * 120.00250 * 179.97438 * 23 22 20 43 43 H 1.08004 * 120.03131 * 359.97438 * 28 14 13 44 44 H 1.09002 * 110.41045 * 79.46351 * 29 10 9 45 45 H 1.09003 * 110.40393 * 201.77448 * 29 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4521 0.0000 0.0000 3 6 2.0615 1.1959 0.0000 4 8 1.4034 2.2093 -0.0005 5 6 3.5664 1.2748 0.0006 6 1 4.0770 0.4908 0.5598 7 6 4.2459 1.7920 -1.2690 8 1 3.6417 2.0204 -2.1470 9 6 5.7378 1.4745 -1.4800 10 7 6.4594 2.5653 -0.7840 11 6 7.5762 3.2048 -1.1844 12 8 8.0472 4.0885 -0.5003 13 6 8.2398 2.8216 -2.4821 14 6 9.4595 3.6805 -2.6952 15 6 9.3484 4.8835 -3.3689 16 6 10.4662 5.6718 -3.5711 17 6 11.6959 5.2650 -3.0915 18 6 11.8099 4.0604 -2.4103 19 8 13.0170 3.6580 -1.9372 20 6 14.0846 4.4155 -2.2605 21 1 13.9466 5.3407 -2.8003 22 6 15.3594 4.0066 -1.9001 23 7 15.5275 2.8798 -1.2422 24 14 16.8385 5.0557 -2.3487 25 1 17.1089 6.0235 -1.2553 26 1 18.0243 4.1828 -2.5416 27 1 16.5582 5.7948 -3.6058 28 6 10.6861 3.2682 -2.2133 29 6 5.6712 2.7980 0.4486 30 6 4.1995 2.6676 -0.0001 31 1 3.5717 3.5564 0.0621 32 1 -0.3634 -1.0276 0.0005 33 1 -0.3633 0.5139 0.8899 34 1 -0.3632 0.5138 -0.8901 35 1 5.9793 1.4766 -2.5429 36 1 5.9853 0.5107 -1.0350 37 1 7.5412 2.9712 -3.3054 38 1 8.5362 1.7734 -2.4430 39 1 8.3870 5.2058 -3.7410 40 1 10.3769 6.6087 -4.1008 41 1 12.5680 5.8829 -3.2465 42 1 16.4194 2.5936 -0.9903 43 1 10.7715 2.3310 -1.6835 44 1 5.9082 2.0441 1.1993 45 1 5.8641 3.7968 0.8400 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000816969717.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:56:47 Heat of formation + Delta-G solvation = -98.430605 kcal Electronic energy + Delta-G solvation = -28487.364536 eV Core-core repulsion = 24243.435117 eV Total energy + Delta-G solvation = -4243.929418 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 345.145 amu Computer time = 0.78 seconds Orbital eigenvalues (eV) -42.09556 -41.18099 -40.63915 -39.48191 -38.10317 -37.52590 -34.82663 -34.32550 -33.41637 -30.92541 -29.92395 -29.36696 -28.55657 -27.38935 -26.78828 -24.27675 -23.25775 -22.62684 -21.57197 -21.24762 -20.48219 -19.40282 -18.99955 -18.71225 -18.22576 -17.79293 -17.43092 -16.88041 -16.69052 -16.45487 -16.15270 -16.06698 -15.46900 -15.32240 -15.20422 -14.78308 -14.49553 -14.34182 -14.25494 -14.02270 -13.82171 -13.67086 -13.55935 -13.33293 -12.96874 -12.93556 -12.80080 -12.61981 -12.45506 -12.37347 -12.21323 -12.09664 -11.84682 -11.68655 -11.45359 -11.36171 -11.19260 -10.87401 -10.77819 -9.82608 -9.62879 -8.96821 -8.45930 -6.14462 0.51772 0.76813 0.88984 1.34778 1.44179 1.46772 1.52636 1.66867 1.94407 2.18625 2.38088 2.84426 3.16810 3.34901 3.41563 3.45134 3.53798 3.76566 3.88903 3.95241 4.07033 4.09877 4.12257 4.29808 4.32516 4.32858 4.41154 4.43041 4.57861 4.61013 4.68163 4.72580 4.74605 4.75501 4.79095 4.98747 5.01485 5.06514 5.14027 5.18460 5.29863 5.32239 5.65990 5.73797 5.76252 6.03902 6.23906 6.47624 6.63093 6.98610 7.15312 7.80080 8.77528 Molecular weight = 345.15amu Principal moments of inertia in cm(-1) A = 0.030820 B = 0.001702 C = 0.001662 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 908.297552 B =16449.550233 C =16846.346573 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.028 3.972 2 O -0.356 6.356 3 C 0.496 3.504 4 O -0.536 6.536 5 C -0.118 4.118 6 H 0.163 0.837 7 C -0.128 4.128 8 H 0.141 0.859 9 C 0.123 3.877 10 N -0.627 5.627 11 C 0.537 3.463 12 O -0.579 6.579 13 C -0.084 4.084 14 C -0.028 4.028 15 C -0.180 4.180 16 C -0.075 4.075 17 C -0.246 4.246 18 C 0.111 3.889 19 O -0.234 6.234 20 C -0.415 4.415 21 H 0.100 0.900 22 C -0.023 4.023 23 N -0.921 5.921 24 Si 1.020 2.980 25 H -0.265 1.265 26 H -0.269 1.269 27 H -0.253 1.253 28 C -0.190 4.190 29 C 0.128 3.872 30 C -0.146 4.146 31 H 0.124 0.876 32 H 0.133 0.867 33 H 0.061 0.939 34 H 0.063 0.937 35 H 0.120 0.880 36 H 0.105 0.895 37 H 0.144 0.856 38 H 0.125 0.875 39 H 0.146 0.854 40 H 0.144 0.856 41 H 0.117 0.883 42 H 0.272 0.728 43 H 0.108 0.892 44 H 0.093 0.907 45 H 0.071 0.929 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -29.994 -7.598 -2.633 31.054 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.065 4.065 2 O -0.272 6.272 3 C 0.340 3.660 4 O -0.426 6.426 5 C -0.137 4.137 6 H 0.180 0.820 7 C -0.147 4.147 8 H 0.158 0.842 9 C 0.002 3.998 10 N -0.362 5.362 11 C 0.327 3.673 12 O -0.457 6.457 13 C -0.123 4.123 14 C -0.028 4.028 15 C -0.198 4.198 16 C -0.093 4.093 17 C -0.266 4.266 18 C 0.061 3.939 19 O -0.141 6.141 20 C -0.491 4.491 21 H 0.117 0.883 22 C -0.221 4.221 23 N -0.559 5.559 24 Si 0.839 3.161 25 H -0.190 1.190 26 H -0.193 1.193 27 H -0.176 1.176 28 C -0.209 4.209 29 C 0.006 3.994 30 C -0.165 4.165 31 H 0.141 0.859 32 H 0.151 0.849 33 H 0.080 0.920 34 H 0.082 0.918 35 H 0.138 0.862 36 H 0.123 0.877 37 H 0.162 0.838 38 H 0.143 0.857 39 H 0.164 0.836 40 H 0.162 0.838 41 H 0.135 0.865 42 H 0.081 0.919 43 H 0.126 0.874 44 H 0.111 0.889 45 H 0.090 0.910 Dipole moment (debyes) X Y Z Total from point charges -29.635 -7.107 -2.095 30.548 hybrid contribution 0.637 0.640 0.406 0.990 sum -28.999 -6.466 -1.690 29.759 Atomic orbital electron populations 1.23588 0.74473 1.05877 1.02585 1.86486 1.25060 1.32226 1.83385 1.22754 0.90789 0.81204 0.71254 1.90689 1.67683 1.37545 1.46670 1.21828 0.87341 1.00043 1.04513 0.82003 1.23701 0.97034 1.01863 0.92086 0.84161 1.22128 0.86782 0.90207 1.00682 1.49326 1.25698 1.37723 1.23417 1.20625 0.78905 0.80251 0.87502 1.90771 1.64280 1.33018 1.57659 1.20679 0.94687 1.01395 0.95548 1.19202 0.92361 0.95465 0.95821 1.20969 0.99014 0.95204 1.04657 1.21126 0.91299 0.99588 0.97260 1.21297 0.99838 0.98233 1.07200 1.19889 0.86964 0.93906 0.93169 1.83935 1.13046 1.50864 1.66278 1.21820 0.83858 1.04865 1.38541 0.88299 1.26594 1.01045 0.98259 0.96157 1.70187 1.24192 1.23050 1.38517 0.84580 0.75137 0.77066 0.79351 1.19020 1.19331 1.17618 1.20223 0.91558 1.01201 1.07953 1.21783 0.86997 1.03078 0.87531 1.23529 0.96313 0.94095 1.02559 0.85855 0.84927 0.92011 0.91816 0.86168 0.87654 0.83826 0.85706 0.83613 0.83781 0.86498 0.91865 0.87384 0.88886 0.90995 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.21 10.56 113.37 1.20 1.41 16 2 O -0.36 -4.36 10.57 -51.39 -0.54 -4.90 16 3 C 0.50 7.23 7.74 71.24 0.55 7.78 16 4 O -0.54 -11.28 16.11 21.96 0.35 -10.93 16 5 C -0.12 -1.17 5.85 -11.54 -0.07 -1.24 16 6 H 0.16 0.90 8.14 -2.39 -0.02 0.88 16 7 C -0.13 -1.14 6.81 -10.04 -0.07 -1.21 16 8 H 0.14 1.05 8.14 -2.39 -0.02 1.03 16 9 C 0.12 1.05 6.70 86.40 0.58 1.63 16 10 N -0.63 -11.52 3.32 -808.69 -2.68 -14.20 16 11 C 0.54 14.55 7.91 87.66 0.69 15.24 16 12 O -0.58 -22.77 16.30 -3.03 -0.05 -22.82 16 13 C -0.08 -1.90 4.81 29.10 0.14 -1.76 16 14 C -0.03 -0.97 4.37 -19.88 -0.09 -1.06 16 15 C -0.18 -5.95 9.70 22.30 0.22 -5.73 16 16 C -0.07 -2.75 10.04 22.25 0.22 -2.53 16 17 C -0.25 -11.47 9.17 22.39 0.21 -11.26 16 18 C 0.11 5.86 6.65 22.58 0.15 6.01 16 19 O -0.23 -14.77 9.76 -22.79 -0.22 -14.99 16 20 C -0.41 -25.13 9.49 67.92 0.64 -24.49 16 21 H 0.10 5.53 5.20 -2.91 -0.02 5.52 16 22 C -0.02 -1.37 5.49 84.83 0.47 -0.90 16 23 N -0.92 -57.89 13.67 21.61 0.30 -57.60 16 24 Si 1.02 44.12 29.55 68.60 2.03 46.15 16 25 H -0.27 -10.98 7.11 99.48 0.71 -10.28 16 26 H -0.27 -11.07 7.11 99.48 0.71 -10.36 16 27 H -0.25 -10.14 7.11 99.48 0.71 -9.43 16 28 C -0.19 -8.56 9.65 22.39 0.22 -8.34 16 29 C 0.13 2.19 6.86 86.54 0.59 2.78 16 30 C -0.15 -1.95 6.56 -9.90 -0.06 -2.01 16 31 H 0.12 2.02 7.84 -2.39 -0.02 2.00 16 32 H 0.13 0.20 8.14 -2.39 -0.02 0.18 16 33 H 0.06 0.51 8.13 -2.39 -0.02 0.49 16 34 H 0.06 0.50 8.13 -2.39 -0.02 0.48 16 35 H 0.12 0.50 7.30 -2.39 -0.02 0.48 16 36 H 0.11 0.54 8.14 -2.38 -0.02 0.52 16 37 H 0.14 1.99 7.89 -2.39 -0.02 1.97 16 38 H 0.12 2.27 8.08 -2.39 -0.02 2.25 16 39 H 0.15 3.63 8.06 -2.91 -0.02 3.60 16 40 H 0.14 4.19 8.06 -2.91 -0.02 4.17 16 41 H 0.12 5.50 5.64 -2.91 -0.02 5.49 16 42 H 0.27 15.63 8.31 -92.71 -0.77 14.86 16 43 H 0.11 4.82 8.06 -2.91 -0.02 4.80 16 44 H 0.09 1.31 8.14 -2.39 -0.02 1.29 16 45 H 0.07 1.58 7.88 -2.39 -0.02 1.56 16 Total: -1.00 -89.27 388.23 5.78 -83.48 By element: Atomic # 1 Polarization: 20.49 SS G_CDS: 1.02 Total: 21.51 kcal Atomic # 6 Polarization: -31.28 SS G_CDS: 5.59 Total: -25.69 kcal Atomic # 7 Polarization: -69.41 SS G_CDS: -2.39 Total: -71.80 kcal Atomic # 8 Polarization: -53.19 SS G_CDS: -0.46 Total: -53.65 kcal Atomic # 14 Polarization: 44.12 SS G_CDS: 2.03 Total: 46.15 kcal Total: -89.27 5.78 -83.48 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000816969717.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -14.947 kcal (2) G-P(sol) polarization free energy of solvation -89.267 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -104.214 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.783 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -83.484 kcal (6) G-S(sol) free energy of system = (1) + (5) -98.431 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.79 seconds