Wall clock time and date at job start Wed Apr 1 2020 03:07:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.17395 * 1 3 3 C 1.47205 * 179.97438 * 2 1 4 4 O 1.42903 * 109.47057 * 182.40326 * 3 2 1 5 5 C 1.42896 * 113.99938 * 180.02562 * 4 3 2 6 6 H 1.08990 * 109.47367 * 29.99805 * 5 4 3 7 7 C 1.53006 * 109.46691 * 269.99887 * 5 4 3 8 8 C 1.50700 * 109.46940 * 150.00272 * 5 4 3 9 9 O 1.21282 * 120.00225 * 8.06238 * 8 5 4 10 10 N 1.34775 * 119.99390 * 187.78808 * 8 5 4 11 11 C 1.46495 * 120.00593 * 6.25030 * 10 8 5 12 12 C 1.50702 * 109.47450 * 86.32689 * 11 10 8 13 13 H 1.08000 * 119.99681 * 359.97438 * 12 11 10 14 14 C 1.37878 * 120.00069 * 180.02562 * 12 11 10 15 15 N 1.31514 * 119.99761 * 179.97438 * 14 12 11 16 16 Si 1.86798 * 120.00229 * 0.02562 * 14 12 11 17 17 H 1.48502 * 109.47291 * 89.99751 * 16 14 12 18 18 H 1.48500 * 109.47166 * 210.00106 * 16 14 12 19 19 H 1.48500 * 109.46974 * 329.99863 * 16 14 12 20 20 C 1.40108 * 119.99496 * 186.24303 * 10 8 5 21 21 C 1.38846 * 120.01380 * 187.71732 * 20 10 8 22 22 C 1.38133 * 120.03215 * 179.77749 * 21 20 10 23 23 C 1.38710 * 120.16012 * 0.53841 * 22 21 20 24 24 C 1.38986 * 119.93424 * 359.65291 * 23 22 21 25 25 C 1.38648 * 119.88484 * 0.11468 * 24 23 22 26 26 O 1.36120 * 120.78269 * 180.26233 * 24 23 22 27 27 C 1.43167 * 116.72889 * 342.80179 * 26 24 23 28 28 C 1.53468 * 108.25008 * 46.19205 * 27 26 24 29 29 O 1.36206 * 119.31349 * 179.55713 * 23 22 21 30 30 H 4.38450 * 5.44534 * 180.02562 * 4 1 2 31 31 H 1.09005 * 109.46864 * 62.40406 * 3 2 1 32 32 H 1.08997 * 109.47306 * 302.40801 * 3 2 1 33 33 H 1.09005 * 109.47317 * 65.96274 * 7 5 4 34 34 H 1.08997 * 109.46634 * 185.95575 * 7 5 4 35 35 H 1.08997 * 109.47300 * 305.95755 * 7 5 4 36 36 H 1.08996 * 109.47329 * 206.32975 * 11 10 8 37 37 H 1.09003 * 109.46861 * 326.33047 * 11 10 8 38 38 H 0.97000 * 120.00137 * 179.97438 * 15 14 12 39 39 H 1.07998 * 119.98833 * 0.05108 * 21 20 10 40 40 H 1.08000 * 119.91590 * 180.28928 * 22 21 20 41 41 H 1.08009 * 119.98550 * 179.97438 * 25 24 23 42 42 H 1.09008 * 109.70706 * 165.87766 * 27 26 24 43 43 H 1.08999 * 109.71065 * 286.49843 * 27 26 24 44 44 H 1.08998 * 109.71051 * 59.91552 * 28 27 26 45 45 H 1.09001 * 109.71112 * 180.55381 * 28 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.1739 0.0000 0.0000 3 6 2.6460 0.0007 0.0000 4 8 3.1217 1.3470 0.0565 5 6 4.5462 1.4604 0.0606 6 1 4.9788 0.6245 -0.4890 7 6 5.0551 1.4402 1.5034 8 6 4.9489 2.7557 -0.5960 9 8 4.1038 3.5734 -0.8930 10 7 6.2486 3.0077 -0.8480 11 6 7.2554 1.9703 -0.6110 12 6 7.3682 1.0917 -1.8301 13 1 6.7512 1.2863 -2.6949 14 6 8.2582 0.0387 -1.8411 15 7 8.3562 -0.7284 -2.9049 16 14 9.3238 -0.2993 -0.3446 17 1 8.6146 -1.2323 0.5675 18 1 10.6063 -0.9098 -0.7778 19 1 9.5975 0.9754 0.3663 20 6 6.6369 4.2620 -1.3370 21 6 7.9464 4.4723 -1.7479 22 6 8.3284 5.7074 -2.2343 23 6 7.4093 6.7439 -2.3034 24 6 6.0987 6.5375 -1.8891 25 6 5.7145 5.2962 -1.4054 26 8 5.1813 7.5409 -1.9544 27 6 5.6910 8.8714 -2.0941 28 6 6.7722 8.8600 -3.1831 29 8 7.8069 7.9573 -2.7774 30 1 -1.0502 -0.0004 0.0002 31 1 3.0095 -0.4753 -0.9108 32 1 3.0096 -0.5499 0.8676 33 1 4.8571 0.4634 1.9450 34 1 6.1280 1.6324 1.5129 35 1 4.5429 2.2102 2.0802 36 1 8.2191 2.4383 -0.4100 37 1 6.9592 1.3658 0.2464 38 1 8.9826 -1.4689 -2.9128 39 1 8.6655 3.6685 -1.6913 40 1 9.3463 5.8675 -2.5578 41 1 4.6966 5.1342 -1.0826 42 1 4.8847 9.5455 -2.3837 43 1 6.1242 9.2002 -1.1494 44 1 6.3406 8.5246 -4.1261 45 1 7.1844 9.8620 -3.3025 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000823081364.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:07:07 Heat of formation + Delta-G solvation = -35.469451 kcal Electronic energy + Delta-G solvation = -30588.989867 eV Core-core repulsion = 26347.790649 eV Total energy + Delta-G solvation = -4241.199218 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 345.145 amu Computer time = 0.63 seconds Orbital eigenvalues (eV) -41.05478 -40.19081 -38.10075 -37.00411 -36.80545 -35.26750 -33.37717 -32.70266 -31.45543 -30.65820 -29.92352 -28.22836 -27.62323 -26.99433 -24.71415 -23.98633 -22.82695 -22.27006 -20.67112 -19.42070 -18.59364 -18.12954 -17.39787 -17.25284 -17.07011 -16.69714 -15.98644 -15.79644 -15.42457 -15.17647 -14.79099 -14.74920 -14.64676 -14.17939 -14.10880 -13.70637 -13.46973 -13.28895 -13.06978 -12.88037 -12.65188 -12.57156 -12.33424 -12.17862 -11.65316 -11.55192 -11.47610 -11.24227 -10.99868 -10.89291 -10.69861 -10.59040 -10.46780 -10.39850 -10.33043 -9.80683 -9.53447 -9.01648 -8.88010 -8.72995 -8.06760 -7.07865 -6.35245 -4.39884 1.62861 1.74800 2.45849 2.83956 2.99709 3.05476 3.13663 3.14984 3.22204 3.29555 3.51623 4.10220 4.12625 4.22101 4.33287 4.61748 4.80449 4.83815 4.90619 4.93655 5.00094 5.18044 5.24027 5.32398 5.40528 5.44821 5.53252 5.55775 5.69559 5.75722 5.84155 5.86421 5.93160 6.02847 6.11661 6.23437 6.45527 6.50828 6.55516 6.71356 6.85357 7.15185 7.19113 7.21562 7.39516 7.59096 7.78016 7.82292 8.20280 8.58231 8.72185 9.20608 10.76680 Molecular weight = 345.15amu Principal moments of inertia in cm(-1) A = 0.008044 B = 0.004281 C = 0.002992 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3479.863817 B = 6539.458675 C = 9354.522296 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.187 4.187 2 C -0.180 4.180 3 C 0.166 3.834 4 O -0.355 6.355 5 C 0.073 3.927 6 H 0.113 0.887 7 C -0.178 4.178 8 C 0.525 3.475 9 O -0.515 6.515 10 N -0.526 5.526 11 C 0.188 3.812 12 C -0.550 4.550 13 H 0.082 0.918 14 C 0.082 3.918 15 N -0.882 5.882 16 Si 0.864 3.136 17 H -0.270 1.270 18 H -0.280 1.280 19 H -0.261 1.261 20 C 0.180 3.820 21 C -0.139 4.139 22 C -0.092 4.092 23 C 0.009 3.991 24 C 0.067 3.933 25 C -0.167 4.167 26 O -0.306 6.306 27 C 0.021 3.979 28 C 0.022 3.978 29 O -0.312 6.312 30 H 0.220 0.780 31 H 0.081 0.919 32 H 0.076 0.924 33 H 0.070 0.930 34 H 0.084 0.916 35 H 0.068 0.932 36 H 0.048 0.952 37 H 0.048 0.952 38 H 0.269 0.731 39 H 0.147 0.853 40 H 0.133 0.867 41 H 0.184 0.816 42 H 0.116 0.884 43 H 0.073 0.927 44 H 0.073 0.927 45 H 0.115 0.885 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.406 9.472 6.049 12.072 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C -0.180 4.180 3 C 0.090 3.910 4 O -0.273 6.273 5 C 0.012 3.988 6 H 0.130 0.870 7 C -0.235 4.235 8 C 0.314 3.686 9 O -0.392 6.392 10 N -0.247 5.247 11 C 0.068 3.932 12 C -0.588 4.588 13 H 0.100 0.900 14 C -0.123 4.123 15 N -0.518 5.518 16 Si 0.690 3.310 17 H -0.195 1.195 18 H -0.206 1.206 19 H -0.186 1.186 20 C 0.084 3.916 21 C -0.159 4.159 22 C -0.111 4.111 23 C -0.036 4.036 24 C 0.022 3.978 25 C -0.187 4.187 26 O -0.221 6.221 27 C -0.055 4.055 28 C -0.054 4.054 29 O -0.227 6.227 30 H 0.237 0.763 31 H 0.099 0.901 32 H 0.094 0.906 33 H 0.089 0.911 34 H 0.103 0.897 35 H 0.087 0.913 36 H 0.066 0.934 37 H 0.065 0.935 38 H 0.079 0.921 39 H 0.165 0.835 40 H 0.151 0.849 41 H 0.200 0.800 42 H 0.134 0.866 43 H 0.091 0.909 44 H 0.091 0.909 45 H 0.133 0.867 Dipole moment (debyes) X Y Z Total from point charges -4.908 9.838 5.844 12.451 hybrid contribution 0.744 -0.420 0.406 0.946 sum -4.164 9.418 6.250 12.046 Atomic orbital electron populations 1.24876 0.95790 0.98157 1.01560 1.22563 0.93859 1.01545 1.00016 1.19222 0.84667 0.85059 1.02013 1.88030 1.19598 1.24691 1.95006 1.21907 0.82015 0.97619 0.97253 0.86961 1.22418 1.02777 1.03400 0.94890 1.20316 0.81641 0.88177 0.78435 1.90382 1.50478 1.46731 1.51591 1.45533 1.07744 1.11830 1.59608 1.20371 0.87730 0.86335 0.98749 1.21270 1.24550 1.12351 1.00584 0.90004 1.24831 0.96185 0.95316 0.95927 1.69876 1.36094 1.17557 1.28280 0.87027 0.81010 0.79549 0.83404 1.19537 1.20552 1.18583 1.17529 0.93036 0.84405 0.96636 1.20853 0.95591 0.97318 1.02149 1.20132 0.99112 0.90041 1.01797 1.18828 0.93402 0.86875 1.04481 1.18686 0.87770 0.89710 1.01678 1.21608 1.04133 0.89174 1.03758 1.86314 1.32253 1.14022 1.89464 1.23549 0.98841 0.83583 0.99478 1.23516 0.89732 0.94735 0.97425 1.86272 1.33252 1.23583 1.79631 0.76285 0.90082 0.90609 0.91116 0.89748 0.91304 0.93440 0.93480 0.92073 0.83521 0.84879 0.79956 0.86626 0.90903 0.90892 0.86702 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.19 -2.30 19.25 29.55 0.57 -1.74 16 2 C -0.18 -2.62 13.73 -37.12 -0.51 -3.13 16 3 C 0.17 2.40 6.22 34.37 0.21 2.61 16 4 O -0.35 -6.33 9.49 -55.01 -0.52 -6.85 16 5 C 0.07 1.27 2.32 -27.88 -0.06 1.21 16 6 H 0.11 2.00 6.99 -51.93 -0.36 1.63 16 7 C -0.18 -2.53 9.13 37.16 0.34 -2.19 16 8 C 0.53 10.79 6.91 -10.99 -0.08 10.72 16 9 O -0.51 -11.71 13.04 -14.22 -0.19 -11.89 16 10 N -0.53 -10.77 2.69 -114.73 -0.31 -11.08 16 11 C 0.19 3.84 3.07 -5.20 -0.02 3.83 16 12 C -0.55 -13.50 9.52 -34.44 -0.33 -13.83 16 13 H 0.08 2.32 8.06 -52.49 -0.42 1.90 16 14 C 0.08 2.07 5.47 -17.82 -0.10 1.97 16 15 N -0.88 -24.19 13.96 55.43 0.77 -23.42 16 16 Si 0.86 18.09 27.47 -169.99 -4.67 13.42 16 17 H -0.27 -5.45 7.11 56.52 0.40 -5.05 16 18 H -0.28 -6.01 7.11 56.52 0.40 -5.61 16 19 H -0.26 -5.11 6.54 56.52 0.37 -4.74 16 20 C 0.18 3.65 6.49 -83.66 -0.54 3.10 16 21 C -0.14 -2.60 9.15 -39.39 -0.36 -2.96 16 22 C -0.09 -1.56 9.95 -39.45 -0.39 -1.96 16 23 C 0.01 0.16 6.49 -39.13 -0.25 -0.10 16 24 C 0.07 1.23 6.49 -39.15 -0.25 0.98 16 25 C -0.17 -3.37 8.89 -39.24 -0.35 -3.72 16 26 O -0.31 -5.08 10.42 -32.90 -0.34 -5.42 16 27 C 0.02 0.24 7.26 37.40 0.27 0.51 16 28 C 0.02 0.24 7.26 37.40 0.27 0.51 16 29 O -0.31 -4.73 10.42 -33.18 -0.35 -5.08 16 30 H 0.22 1.76 7.80 -54.08 -0.42 1.34 16 31 H 0.08 1.13 8.08 -51.93 -0.42 0.71 16 32 H 0.08 0.89 8.02 -51.93 -0.42 0.48 16 33 H 0.07 0.84 8.02 -51.93 -0.42 0.42 16 34 H 0.08 1.20 5.49 -51.93 -0.28 0.91 16 35 H 0.07 0.96 8.14 -51.93 -0.42 0.53 16 36 H 0.05 0.95 5.41 -51.93 -0.28 0.67 16 37 H 0.05 0.88 3.74 -51.93 -0.19 0.69 16 38 H 0.27 6.91 8.31 -40.82 -0.34 6.58 16 39 H 0.15 2.75 6.29 -52.49 -0.33 2.41 16 40 H 0.13 1.95 8.06 -52.49 -0.42 1.53 16 41 H 0.18 3.98 4.73 -55.11 -0.26 3.72 16 42 H 0.12 0.91 8.14 -51.92 -0.42 0.48 16 43 H 0.07 0.77 8.14 -51.93 -0.42 0.35 16 44 H 0.07 0.80 8.14 -51.93 -0.42 0.38 16 45 H 0.12 0.84 8.14 -51.93 -0.42 0.42 16 LS Contribution 375.53 15.07 5.66 5.66 Total: -1.00 -32.05 375.53 -7.03 -39.08 By element: Atomic # 1 Polarization: 15.25 SS G_CDS: -5.51 Total: 9.74 kcal Atomic # 6 Polarization: -2.59 SS G_CDS: -1.58 Total: -4.16 kcal Atomic # 7 Polarization: -34.96 SS G_CDS: 0.46 Total: -34.49 kcal Atomic # 8 Polarization: -27.84 SS G_CDS: -1.40 Total: -29.24 kcal Atomic # 14 Polarization: 18.09 SS G_CDS: -4.67 Total: 13.42 kcal Total LS contribution 5.66 Total: 5.66 kcal Total: -32.05 -7.03 -39.08 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000823081364.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 3.612 kcal (2) G-P(sol) polarization free energy of solvation -32.046 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -28.435 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.035 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.081 kcal (6) G-S(sol) free energy of system = (1) + (5) -35.469 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.63 seconds