Wall clock time and date at job start Wed Apr 1 2020 03:08:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.17396 * 1 3 3 C 1.47205 * 179.97438 * 2 1 4 4 O 1.42896 * 109.46898 * 163.31395 * 3 2 1 5 5 C 1.42903 * 113.99822 * 179.97438 * 4 3 2 6 6 H 1.08995 * 109.47281 * 329.99907 * 5 4 3 7 7 C 1.53002 * 109.47101 * 89.99862 * 5 4 3 8 8 C 1.50706 * 109.47024 * 209.99946 * 5 4 3 9 9 O 1.20831 * 119.99881 * 354.99787 * 8 5 4 10 10 O 1.34222 * 120.00072 * 174.99995 * 8 5 4 11 11 C 1.45198 * 117.00250 * 179.97438 * 10 8 5 12 12 C 1.50697 * 109.47260 * 180.02562 * 11 10 8 13 13 O 1.21281 * 120.00226 * 354.72886 * 12 11 10 14 14 N 1.34778 * 120.00056 * 174.73549 * 12 11 10 15 15 C 1.46496 * 120.00099 * 184.43961 * 14 12 11 16 16 C 1.50708 * 109.46951 * 269.99427 * 15 14 12 17 17 H 1.08000 * 120.00003 * 0.02562 * 16 15 14 18 18 C 1.37875 * 120.00158 * 179.97438 * 16 15 14 19 19 N 1.31515 * 119.99803 * 180.02562 * 18 16 15 20 20 Si 1.86803 * 119.99921 * 0.02562 * 18 16 15 21 21 H 1.48504 * 109.46704 * 90.00000 * 20 18 16 22 22 H 1.48499 * 109.46728 * 209.99657 * 20 18 16 23 23 H 1.48496 * 109.47155 * 330.00049 * 20 18 16 24 24 C 1.39926 * 120.00025 * 4.43247 * 14 12 11 25 25 C 1.38870 * 120.07002 * 66.72294 * 24 14 12 26 26 C 1.38115 * 119.92970 * 180.23458 * 25 24 14 27 27 C 1.38289 * 120.06777 * 359.46700 * 26 25 24 28 28 C 1.38281 * 120.13840 * 0.55686 * 27 26 25 29 29 C 1.38110 * 120.07561 * 359.69851 * 28 27 26 30 30 H 4.38442 * 5.44541 * 179.97438 * 4 1 2 31 31 H 1.09000 * 109.47341 * 43.31119 * 3 2 1 32 32 H 1.08995 * 109.46864 * 283.31291 * 3 2 1 33 33 H 1.09000 * 109.46878 * 179.97438 * 7 5 4 34 34 H 1.08995 * 109.47376 * 300.00177 * 7 5 4 35 35 H 1.09010 * 109.46666 * 60.00200 * 7 5 4 36 36 H 1.08997 * 109.46880 * 59.99677 * 11 10 8 37 37 H 1.08999 * 109.46890 * 300.00260 * 11 10 8 38 38 H 1.08998 * 109.47541 * 29.98881 * 15 14 12 39 39 H 1.08999 * 109.47356 * 149.99851 * 15 14 12 40 40 H 0.97001 * 120.00033 * 180.02562 * 19 18 16 41 41 H 1.07996 * 120.03439 * 359.95407 * 25 24 14 42 42 H 1.07996 * 119.96626 * 179.72258 * 26 25 24 43 43 H 1.07997 * 119.92676 * 180.25532 * 27 26 25 44 44 H 1.08007 * 119.96373 * 179.72691 * 28 27 26 45 45 H 1.08001 * 120.03925 * 179.97438 * 29 28 27 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.1740 0.0000 0.0000 3 6 2.6460 0.0007 0.0000 4 8 3.1217 1.2914 -0.3868 5 6 4.5462 1.4003 -0.4187 6 1 4.9788 0.7259 0.3203 7 6 5.0554 1.0247 -1.8117 8 6 4.9489 2.8176 -0.1018 9 8 4.1030 3.6689 0.0386 10 8 6.2471 3.1342 0.0244 11 6 6.5614 4.5185 0.3297 12 6 8.0558 4.6834 0.4324 13 8 8.7795 3.7128 0.3600 14 7 8.5882 5.9095 0.6048 15 6 10.0429 6.0827 0.6072 16 6 10.5640 5.9349 2.0136 17 1 9.8800 5.7318 2.8244 18 6 11.9140 6.0579 2.2651 19 7 12.3687 5.9284 3.4923 20 14 13.0972 6.4085 0.8627 21 1 13.2470 7.8766 0.6969 22 1 14.4200 5.8073 1.1692 23 1 12.5650 5.8203 -0.3927 24 6 7.7515 7.0171 0.7813 25 6 6.9720 7.1249 1.9256 26 6 6.1435 8.2170 2.0946 27 6 6.0980 9.2078 1.1309 28 6 6.8725 9.1031 -0.0098 29 6 7.6991 8.0110 -0.1872 30 1 -1.0502 -0.0004 -0.0001 31 1 3.0097 -0.7469 -0.7049 32 1 3.0094 -0.2358 1.0000 33 1 6.1419 1.1083 -1.8361 34 1 4.7642 -0.0003 -2.0409 35 1 4.6228 1.6993 -2.5507 36 1 6.0989 4.7956 1.2769 37 1 6.1789 5.1612 -0.4632 38 1 10.5000 5.3264 -0.0308 39 1 10.2913 7.0748 0.2302 40 1 13.3185 6.0153 3.6693 41 1 7.0103 6.3535 2.6804 42 1 5.5338 8.2993 2.9821 43 1 5.4524 10.0628 1.2674 44 1 6.8314 9.8764 -0.7626 45 1 8.3035 7.9295 -1.0786 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000837852075.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:08:59 Heat of formation + Delta-G solvation = -60.543614 kcal Electronic energy + Delta-G solvation = -29449.075381 eV Core-core repulsion = 25206.788865 eV Total energy + Delta-G solvation = -4242.286515 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 345.145 amu Computer time = 0.68 seconds Orbital eigenvalues (eV) -40.84061 -39.96935 -38.66480 -38.12411 -36.34876 -35.02055 -33.87155 -32.69528 -31.86478 -30.84029 -29.89078 -29.12688 -27.53186 -27.17760 -24.75468 -22.81027 -22.59169 -22.02724 -21.02013 -19.30126 -19.11674 -17.80585 -17.74615 -17.08638 -16.96571 -16.73359 -16.25642 -16.02525 -15.87189 -15.50535 -15.11731 -14.74959 -14.29386 -14.24484 -14.02900 -13.55842 -13.39433 -13.24018 -13.10182 -12.80199 -12.62471 -12.47634 -12.42449 -12.36686 -11.86757 -11.77373 -11.44084 -11.21581 -11.09397 -10.95080 -10.92506 -10.74679 -10.63208 -10.48207 -10.25643 -9.99574 -9.64287 -9.54874 -8.78231 -8.73879 -8.64368 -7.84701 -6.13603 -4.13263 1.43648 1.55210 1.75009 2.03627 2.43098 2.44233 2.96982 3.23376 3.30423 3.33542 3.44616 3.66944 3.91955 4.16352 4.34386 4.42133 4.53311 4.60847 4.66905 4.76545 4.95794 5.06399 5.10398 5.13482 5.18844 5.20141 5.27413 5.32624 5.34429 5.52157 5.58172 5.72148 5.80291 5.88717 6.16270 6.22546 6.46298 6.52077 6.56455 6.63772 6.65229 6.81593 6.96868 7.18555 7.19392 7.50183 7.60958 7.99347 8.36762 8.63083 8.88762 9.44605 10.99556 Molecular weight = 345.15amu Principal moments of inertia in cm(-1) A = 0.011678 B = 0.002731 C = 0.002378 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2397.146756 B =10250.193818 C =11773.866258 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.168 4.168 2 C -0.194 4.194 3 C 0.171 3.829 4 O -0.355 6.355 5 C 0.102 3.898 6 H 0.107 0.893 7 C -0.171 4.171 8 C 0.460 3.540 9 O -0.486 6.486 10 O -0.327 6.327 11 C 0.053 3.947 12 C 0.518 3.482 13 O -0.501 6.501 14 N -0.550 5.550 15 C 0.220 3.780 16 C -0.530 4.530 17 H 0.076 0.924 18 C 0.075 3.925 19 N -0.894 5.894 20 Si 0.873 3.127 21 H -0.274 1.274 22 H -0.282 1.282 23 H -0.263 1.263 24 C 0.149 3.851 25 C -0.121 4.121 26 C -0.106 4.106 27 C -0.129 4.129 28 C -0.109 4.109 29 C -0.125 4.125 30 H 0.223 0.777 31 H 0.081 0.919 32 H 0.080 0.920 33 H 0.089 0.911 34 H 0.075 0.925 35 H 0.071 0.929 36 H 0.101 0.899 37 H 0.098 0.902 38 H 0.046 0.954 39 H 0.032 0.968 40 H 0.266 0.734 41 H 0.126 0.874 42 H 0.124 0.876 43 H 0.121 0.879 44 H 0.123 0.877 45 H 0.125 0.875 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -19.379 -5.155 -9.134 22.036 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.185 4.185 2 C -0.194 4.194 3 C 0.096 3.904 4 O -0.275 6.275 5 C 0.043 3.957 6 H 0.125 0.875 7 C -0.229 4.229 8 C 0.301 3.699 9 O -0.371 6.371 10 O -0.242 6.242 11 C -0.024 4.024 12 C 0.304 3.696 13 O -0.374 6.374 14 N -0.279 5.279 15 C 0.102 3.898 16 C -0.568 4.568 17 H 0.094 0.906 18 C -0.128 4.128 19 N -0.532 5.532 20 Si 0.699 3.301 21 H -0.200 1.200 22 H -0.208 1.208 23 H -0.188 1.188 24 C 0.057 3.943 25 C -0.141 4.141 26 C -0.124 4.124 27 C -0.147 4.147 28 C -0.128 4.128 29 C -0.144 4.144 30 H 0.239 0.761 31 H 0.099 0.901 32 H 0.098 0.902 33 H 0.107 0.893 34 H 0.094 0.906 35 H 0.090 0.910 36 H 0.119 0.881 37 H 0.116 0.884 38 H 0.064 0.936 39 H 0.050 0.950 40 H 0.076 0.924 41 H 0.144 0.856 42 H 0.142 0.858 43 H 0.139 0.861 44 H 0.141 0.859 45 H 0.143 0.857 Dipole moment (debyes) X Y Z Total from point charges -19.102 -5.296 -9.069 21.799 hybrid contribution 0.677 0.329 -0.279 0.803 sum -18.425 -4.967 -9.348 21.250 Atomic orbital electron populations 1.24993 0.95898 0.97357 1.00299 1.22369 0.93723 1.02322 1.01005 1.19210 0.85115 0.85542 1.00543 1.88070 1.18669 1.31519 1.89216 1.21362 0.82632 0.91244 1.00422 0.87531 1.22259 1.03240 1.02967 0.94416 1.23336 0.80961 0.91437 0.74193 1.90703 1.51639 1.50167 1.44639 1.86494 1.26479 1.30360 1.80900 1.22895 0.95446 0.80261 1.03841 1.19710 0.88393 0.83414 0.78131 1.90737 1.61687 1.37212 1.47786 1.45497 1.08231 1.04038 1.70149 1.19861 0.73385 0.97217 0.99352 1.21219 0.93632 1.49858 0.92088 0.90570 1.24817 0.97895 0.94536 0.95568 1.69883 1.14516 1.49526 1.19231 0.86895 0.81114 0.78844 0.83210 1.19991 1.20768 1.18803 1.17761 0.92960 0.89677 0.93852 1.21404 0.97351 0.99246 0.96065 1.21016 0.98556 0.93753 0.99123 1.21116 1.00001 0.98989 0.94587 1.20977 0.96504 0.97433 0.97875 1.21274 0.99723 0.94680 0.98759 0.76052 0.90132 0.90191 0.89268 0.90567 0.90962 0.88072 0.88414 0.93573 0.95021 0.92450 0.85648 0.85807 0.86133 0.85897 0.85696 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -1.37 19.25 29.55 0.57 -0.80 16 2 C -0.19 -1.88 13.73 -37.12 -0.51 -2.39 16 3 C 0.17 1.41 6.22 34.37 0.21 1.62 16 4 O -0.36 -4.12 9.48 -55.13 -0.52 -4.64 16 5 C 0.10 1.07 3.24 -27.88 -0.09 0.98 16 6 H 0.11 0.83 7.79 -51.93 -0.40 0.42 16 7 C -0.17 -1.43 9.50 37.16 0.35 -1.08 16 8 C 0.46 6.59 7.29 36.01 0.26 6.85 16 9 O -0.49 -8.25 16.26 -25.47 -0.41 -8.66 16 10 O -0.33 -5.19 9.75 -45.86 -0.45 -5.64 16 11 C 0.05 0.86 4.61 36.00 0.17 1.03 16 12 C 0.52 10.57 7.62 -10.99 -0.08 10.49 16 13 O -0.50 -12.09 16.13 -14.04 -0.23 -12.31 16 14 N -0.55 -11.35 2.51 -114.74 -0.29 -11.64 16 15 C 0.22 5.29 4.14 -5.19 -0.02 5.27 16 16 C -0.53 -15.02 9.94 -34.44 -0.34 -15.36 16 17 H 0.08 2.37 8.06 -52.49 -0.42 1.95 16 18 C 0.07 2.15 5.47 -17.82 -0.10 2.06 16 19 N -0.89 -27.26 13.96 55.43 0.77 -26.49 16 20 Si 0.87 21.14 27.47 -169.99 -4.67 16.47 16 21 H -0.27 -6.41 7.11 56.52 0.40 -6.01 16 22 H -0.28 -6.81 7.11 56.52 0.40 -6.40 16 23 H -0.26 -6.15 6.54 56.52 0.37 -5.78 16 24 C 0.15 2.62 4.43 -83.69 -0.37 2.25 16 25 C -0.12 -1.96 8.44 -39.39 -0.33 -2.29 16 26 C -0.11 -1.42 10.04 -39.61 -0.40 -1.81 16 27 C -0.13 -1.56 10.04 -39.55 -0.40 -1.96 16 28 C -0.11 -1.37 10.04 -39.61 -0.40 -1.77 16 29 C -0.12 -1.87 9.64 -39.39 -0.38 -2.25 16 30 H 0.22 0.95 7.80 -54.08 -0.42 0.53 16 31 H 0.08 0.45 7.87 -51.93 -0.41 0.04 16 32 H 0.08 0.52 8.08 -51.93 -0.42 0.10 16 33 H 0.09 0.77 8.14 -51.93 -0.42 0.34 16 34 H 0.08 0.45 7.87 -51.93 -0.41 0.04 16 35 H 0.07 0.65 8.14 -51.92 -0.42 0.23 16 36 H 0.10 1.56 6.97 -51.93 -0.36 1.20 16 37 H 0.10 1.45 8.02 -51.93 -0.42 1.03 16 38 H 0.05 1.17 6.54 -51.93 -0.34 0.83 16 39 H 0.03 0.72 7.25 -51.93 -0.38 0.34 16 40 H 0.27 7.56 8.31 -40.82 -0.34 7.22 16 41 H 0.13 2.07 7.90 -52.49 -0.41 1.65 16 42 H 0.12 1.36 8.06 -52.49 -0.42 0.94 16 43 H 0.12 1.13 8.06 -52.49 -0.42 0.71 16 44 H 0.12 1.20 8.06 -52.48 -0.42 0.78 16 45 H 0.13 1.75 8.06 -52.49 -0.42 1.33 16 LS Contribution 400.94 15.07 6.04 6.04 Total: -1.00 -36.87 400.94 -7.71 -44.58 By element: Atomic # 1 Polarization: 7.58 SS G_CDS: -6.10 Total: 1.48 kcal Atomic # 6 Polarization: 2.68 SS G_CDS: -1.86 Total: 0.82 kcal Atomic # 7 Polarization: -38.61 SS G_CDS: 0.49 Total: -38.13 kcal Atomic # 8 Polarization: -29.65 SS G_CDS: -1.61 Total: -31.26 kcal Atomic # 14 Polarization: 21.14 SS G_CDS: -4.67 Total: 16.47 kcal Total LS contribution 6.04 Total: 6.04 kcal Total: -36.87 -7.71 -44.58 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000837852075.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -15.966 kcal (2) G-P(sol) polarization free energy of solvation -36.869 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -52.836 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.708 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.577 kcal (6) G-S(sol) free energy of system = (1) + (5) -60.544 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.68 seconds