Wall clock time and date at job start Wed Apr 1 2020 03:08:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.17396 * 1 3 3 C 1.47205 * 179.97438 * 2 1 4 4 O 1.42896 * 109.46898 * 163.31395 * 3 2 1 5 5 C 1.42903 * 113.99822 * 179.97438 * 4 3 2 6 6 H 1.08995 * 109.47281 * 329.99907 * 5 4 3 7 7 C 1.53002 * 109.47101 * 89.99862 * 5 4 3 8 8 C 1.50706 * 109.47024 * 209.99946 * 5 4 3 9 9 O 1.20831 * 119.99881 * 354.99787 * 8 5 4 10 10 O 1.34222 * 120.00072 * 174.99995 * 8 5 4 11 11 C 1.45198 * 117.00250 * 179.97438 * 10 8 5 12 12 C 1.50697 * 109.47260 * 180.02562 * 11 10 8 13 13 O 1.21281 * 120.00226 * 354.72886 * 12 11 10 14 14 N 1.34778 * 120.00056 * 174.73549 * 12 11 10 15 15 C 1.46496 * 120.00099 * 184.43961 * 14 12 11 16 16 C 1.50708 * 109.46951 * 269.99427 * 15 14 12 17 17 H 1.08000 * 120.00003 * 0.02562 * 16 15 14 18 18 C 1.37875 * 120.00158 * 179.97438 * 16 15 14 19 19 N 1.31515 * 119.99803 * 180.02562 * 18 16 15 20 20 Si 1.86803 * 119.99921 * 0.02562 * 18 16 15 21 21 H 1.48504 * 109.46704 * 90.00000 * 20 18 16 22 22 H 1.48499 * 109.46728 * 209.99657 * 20 18 16 23 23 H 1.48496 * 109.47155 * 330.00049 * 20 18 16 24 24 C 1.39926 * 120.00025 * 4.43247 * 14 12 11 25 25 C 1.38870 * 120.07002 * 66.72294 * 24 14 12 26 26 C 1.38115 * 119.92970 * 180.23458 * 25 24 14 27 27 C 1.38289 * 120.06777 * 359.46700 * 26 25 24 28 28 C 1.38281 * 120.13840 * 0.55686 * 27 26 25 29 29 C 1.38110 * 120.07561 * 359.69851 * 28 27 26 30 30 H 4.38442 * 5.44541 * 179.97438 * 4 1 2 31 31 H 1.09000 * 109.47341 * 43.31119 * 3 2 1 32 32 H 1.08995 * 109.46864 * 283.31291 * 3 2 1 33 33 H 1.09000 * 109.46878 * 179.97438 * 7 5 4 34 34 H 1.08995 * 109.47376 * 300.00177 * 7 5 4 35 35 H 1.09010 * 109.46666 * 60.00200 * 7 5 4 36 36 H 1.08997 * 109.46880 * 59.99677 * 11 10 8 37 37 H 1.08999 * 109.46890 * 300.00260 * 11 10 8 38 38 H 1.08998 * 109.47541 * 29.98881 * 15 14 12 39 39 H 1.08999 * 109.47356 * 149.99851 * 15 14 12 40 40 H 0.97001 * 120.00033 * 180.02562 * 19 18 16 41 41 H 1.07996 * 120.03439 * 359.95407 * 25 24 14 42 42 H 1.07996 * 119.96626 * 179.72258 * 26 25 24 43 43 H 1.07997 * 119.92676 * 180.25532 * 27 26 25 44 44 H 1.08007 * 119.96373 * 179.72691 * 28 27 26 45 45 H 1.08001 * 120.03925 * 179.97438 * 29 28 27 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.1740 0.0000 0.0000 3 6 2.6460 0.0007 0.0000 4 8 3.1217 1.2914 -0.3868 5 6 4.5462 1.4003 -0.4187 6 1 4.9788 0.7259 0.3203 7 6 5.0554 1.0247 -1.8117 8 6 4.9489 2.8176 -0.1018 9 8 4.1030 3.6689 0.0386 10 8 6.2471 3.1342 0.0244 11 6 6.5614 4.5185 0.3297 12 6 8.0558 4.6834 0.4324 13 8 8.7795 3.7128 0.3600 14 7 8.5882 5.9095 0.6048 15 6 10.0429 6.0827 0.6072 16 6 10.5640 5.9349 2.0136 17 1 9.8800 5.7318 2.8244 18 6 11.9140 6.0579 2.2651 19 7 12.3687 5.9284 3.4923 20 14 13.0972 6.4085 0.8627 21 1 13.2470 7.8766 0.6969 22 1 14.4200 5.8073 1.1692 23 1 12.5650 5.8203 -0.3927 24 6 7.7515 7.0171 0.7813 25 6 6.9720 7.1249 1.9256 26 6 6.1435 8.2170 2.0946 27 6 6.0980 9.2078 1.1309 28 6 6.8725 9.1031 -0.0098 29 6 7.6991 8.0110 -0.1872 30 1 -1.0502 -0.0004 -0.0001 31 1 3.0097 -0.7469 -0.7049 32 1 3.0094 -0.2358 1.0000 33 1 6.1419 1.1083 -1.8361 34 1 4.7642 -0.0003 -2.0409 35 1 4.6228 1.6993 -2.5507 36 1 6.0989 4.7956 1.2769 37 1 6.1789 5.1612 -0.4632 38 1 10.5000 5.3264 -0.0308 39 1 10.2913 7.0748 0.2302 40 1 13.3185 6.0153 3.6693 41 1 7.0103 6.3535 2.6804 42 1 5.5338 8.2993 2.9821 43 1 5.4524 10.0628 1.2674 44 1 6.8314 9.8764 -0.7626 45 1 8.3035 7.9295 -1.0786 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000837852075.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:08:59 Heat of formation + Delta-G solvation = -82.380760 kcal Electronic energy + Delta-G solvation = -29450.022310 eV Core-core repulsion = 25206.788865 eV Total energy + Delta-G solvation = -4243.233445 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 345.145 amu Computer time = 0.80 seconds Orbital eigenvalues (eV) -42.08750 -41.31974 -39.68214 -39.29742 -37.60264 -36.61712 -34.80096 -34.52390 -32.68454 -31.99034 -31.47606 -30.41900 -28.85535 -28.15196 -25.75693 -24.47587 -23.86141 -23.34815 -22.09815 -20.73753 -19.86222 -19.17174 -19.02425 -18.76612 -18.07348 -17.91871 -17.49718 -17.16989 -16.99979 -16.72679 -16.43260 -16.01295 -15.70297 -15.43838 -15.24943 -14.82385 -14.55914 -14.38827 -14.32838 -14.04186 -13.95484 -13.77769 -13.58697 -13.54549 -13.22818 -13.20519 -12.58757 -12.55256 -12.47910 -12.20357 -12.06064 -11.98792 -11.83547 -11.78456 -11.64726 -11.45163 -11.16698 -10.84663 -10.67335 -10.23090 -9.88083 -9.31927 -8.35962 -6.42225 0.26869 0.45153 0.76595 0.91095 1.31370 1.35377 1.37679 1.45574 1.56163 1.80829 2.13237 2.29296 2.79245 2.91333 2.97627 3.23076 3.38256 3.57774 3.78436 3.80896 3.86230 3.91535 4.03203 4.07126 4.23202 4.28299 4.43114 4.51280 4.54853 4.62611 4.66957 4.72313 4.76392 4.82196 4.99897 5.06162 5.10088 5.17894 5.29044 5.35671 5.48145 5.58336 5.63118 5.81894 5.98525 6.16309 6.39625 6.50982 6.57756 6.58196 6.99886 7.21529 8.80942 Molecular weight = 345.15amu Principal moments of inertia in cm(-1) A = 0.011678 B = 0.002731 C = 0.002378 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2397.146756 B =10250.193818 C =11773.866258 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.161 4.161 2 C -0.240 4.240 3 C 0.163 3.837 4 O -0.383 6.383 5 C 0.106 3.894 6 H 0.135 0.865 7 C -0.166 4.166 8 C 0.459 3.541 9 O -0.517 6.517 10 O -0.337 6.337 11 C 0.067 3.933 12 C 0.513 3.487 13 O -0.550 6.550 14 N -0.551 5.551 15 C 0.230 3.770 16 C -0.537 4.537 17 H 0.027 0.973 18 C 0.013 3.987 19 N -0.942 5.942 20 Si 0.947 3.053 21 H -0.253 1.253 22 H -0.279 1.279 23 H -0.250 1.250 24 C 0.111 3.889 25 C -0.141 4.141 26 C -0.107 4.107 27 C -0.117 4.117 28 C -0.101 4.101 29 C -0.131 4.131 30 H 0.253 0.747 31 H 0.108 0.892 32 H 0.095 0.905 33 H 0.085 0.915 34 H 0.106 0.894 35 H 0.062 0.938 36 H 0.107 0.893 37 H 0.116 0.884 38 H 0.034 0.966 39 H 0.052 0.948 40 H 0.269 0.731 41 H 0.105 0.895 42 H 0.147 0.853 43 H 0.160 0.840 44 H 0.160 0.840 45 H 0.133 0.867 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -20.848 -3.834 -11.265 24.005 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.177 4.177 2 C -0.240 4.240 3 C 0.089 3.911 4 O -0.303 6.303 5 C 0.047 3.953 6 H 0.153 0.847 7 C -0.223 4.223 8 C 0.301 3.699 9 O -0.404 6.404 10 O -0.253 6.253 11 C -0.010 4.010 12 C 0.301 3.699 13 O -0.427 6.427 14 N -0.279 5.279 15 C 0.110 3.890 16 C -0.576 4.576 17 H 0.045 0.955 18 C -0.186 4.186 19 N -0.582 5.582 20 Si 0.769 3.231 21 H -0.177 1.177 22 H -0.205 1.205 23 H -0.173 1.173 24 C 0.021 3.979 25 C -0.161 4.161 26 C -0.126 4.126 27 C -0.134 4.134 28 C -0.120 4.120 29 C -0.150 4.150 30 H 0.269 0.731 31 H 0.126 0.874 32 H 0.112 0.888 33 H 0.104 0.896 34 H 0.125 0.875 35 H 0.081 0.919 36 H 0.125 0.875 37 H 0.134 0.866 38 H 0.052 0.948 39 H 0.070 0.930 40 H 0.078 0.922 41 H 0.123 0.877 42 H 0.165 0.835 43 H 0.177 0.823 44 H 0.178 0.822 45 H 0.151 0.849 Dipole moment (debyes) X Y Z Total from point charges -20.620 -3.950 -11.203 23.797 hybrid contribution 0.942 -0.042 0.495 1.065 sum -19.678 -3.993 -10.708 22.756 Atomic orbital electron populations 1.25886 0.96913 0.95854 0.99091 1.23036 0.94911 1.03737 1.02290 1.19522 0.84700 0.84704 1.02172 1.88021 1.19022 1.33682 1.89544 1.21561 0.82693 0.88684 1.02352 0.84748 1.22260 1.02809 1.04510 0.92734 1.24288 0.79806 0.92937 0.72830 1.90675 1.52072 1.51454 1.46240 1.86512 1.27860 1.29868 1.81057 1.22664 0.92313 0.81266 1.04788 1.20370 0.89937 0.82768 0.76839 1.90691 1.63155 1.38671 1.50215 1.45384 1.07431 1.05396 1.69672 1.19526 0.75762 0.97576 0.96180 1.21409 0.93385 1.49645 0.93112 0.95463 1.25841 0.99966 0.94126 0.98634 1.70045 1.15225 1.51050 1.21886 0.85730 0.77972 0.79861 0.79584 1.17701 1.20470 1.17341 1.18038 0.94199 0.89933 0.95726 1.21406 0.98778 1.00268 0.95655 1.21334 0.97865 0.92898 1.00464 1.21608 0.99274 0.99173 0.93389 1.21419 0.94870 0.96979 0.98689 1.21460 1.00495 0.94647 0.98433 0.73108 0.87385 0.88764 0.89608 0.87518 0.91854 0.87529 0.86625 0.94807 0.92981 0.92155 0.87700 0.83514 0.82264 0.82202 0.84899 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.40 19.25 74.32 1.43 -0.97 16 2 C -0.24 -4.42 13.73 31.13 0.43 -3.99 16 3 C 0.16 2.48 6.22 70.18 0.44 2.91 16 4 O -0.38 -8.57 9.48 -129.95 -1.23 -9.80 16 5 C 0.11 2.11 3.24 29.85 0.10 2.21 16 6 H 0.14 1.89 7.79 -2.39 -0.02 1.87 16 7 C -0.17 -2.56 9.50 71.98 0.68 -1.87 16 8 C 0.46 13.25 7.29 71.24 0.52 13.77 16 9 O -0.52 -17.79 16.26 28.37 0.46 -17.33 16 10 O -0.34 -11.01 9.75 -45.00 -0.44 -11.45 16 11 C 0.07 2.26 4.61 71.23 0.33 2.59 16 12 C 0.51 22.00 7.62 87.66 0.67 22.67 16 13 O -0.55 -28.01 16.13 15.71 0.25 -27.76 16 14 N -0.55 -23.60 2.51 -635.31 -1.59 -25.19 16 15 C 0.23 11.31 4.14 85.64 0.35 11.66 16 16 C -0.54 -31.93 9.94 25.60 0.25 -31.67 16 17 H 0.03 1.82 8.06 -2.91 -0.02 1.80 16 18 C 0.01 0.75 5.47 84.65 0.46 1.21 16 19 N -0.94 -59.66 13.96 21.45 0.30 -59.36 16 20 Si 0.95 43.88 27.47 68.60 1.88 45.76 16 21 H -0.25 -10.81 7.11 99.48 0.71 -10.10 16 22 H -0.28 -12.75 7.11 99.48 0.71 -12.04 16 23 H -0.25 -10.94 6.54 99.48 0.65 -10.29 16 24 C 0.11 3.95 4.43 38.15 0.17 4.12 16 25 C -0.14 -4.68 8.44 22.39 0.19 -4.49 16 26 C -0.11 -2.69 10.04 22.25 0.22 -2.46 16 27 C -0.12 -2.39 10.04 22.29 0.22 -2.17 16 28 C -0.10 -2.18 10.04 22.25 0.22 -1.95 16 29 C -0.13 -3.72 9.64 22.39 0.22 -3.50 16 30 H 0.25 1.61 7.80 -4.41 -0.03 1.57 16 31 H 0.11 0.97 7.87 -2.39 -0.02 0.95 16 32 H 0.09 1.09 8.08 -2.39 -0.02 1.07 16 33 H 0.09 1.40 8.14 -2.39 -0.02 1.38 16 34 H 0.11 0.99 7.87 -2.39 -0.02 0.97 16 35 H 0.06 1.09 8.14 -2.38 -0.02 1.07 16 36 H 0.11 3.48 6.97 -2.39 -0.02 3.47 16 37 H 0.12 3.47 8.02 -2.39 -0.02 3.45 16 38 H 0.03 1.75 6.54 -2.39 -0.02 1.73 16 39 H 0.05 2.34 7.25 -2.39 -0.02 2.32 16 40 H 0.27 15.80 8.31 -92.71 -0.77 15.03 16 41 H 0.10 3.77 7.90 -2.91 -0.02 3.75 16 42 H 0.15 2.92 8.06 -2.91 -0.02 2.89 16 43 H 0.16 2.09 8.06 -2.91 -0.02 2.07 16 44 H 0.16 2.28 8.06 -2.91 -0.02 2.25 16 45 H 0.13 3.47 8.06 -2.91 -0.02 3.45 16 Total: -1.00 -85.90 400.94 7.48 -78.42 By element: Atomic # 1 Polarization: 17.72 SS G_CDS: 0.94 Total: 18.66 kcal Atomic # 6 Polarization: 1.15 SS G_CDS: 6.91 Total: 8.05 kcal Atomic # 7 Polarization: -83.26 SS G_CDS: -1.30 Total: -84.55 kcal Atomic # 8 Polarization: -65.38 SS G_CDS: -0.96 Total: -66.34 kcal Atomic # 14 Polarization: 43.88 SS G_CDS: 1.88 Total: 45.76 kcal Total: -85.90 7.48 -78.42 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000837852075.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -3.956 kcal (2) G-P(sol) polarization free energy of solvation -85.900 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -89.856 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 7.476 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -78.425 kcal (6) G-S(sol) free energy of system = (1) + (5) -82.381 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.80 seconds