Wall clock time and date at job start Wed Apr 1 2020 03:09:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.17397 * 1 3 3 C 1.47194 * 179.97438 * 2 1 4 4 O 1.42904 * 109.47303 * 248.36419 * 3 2 1 5 5 C 1.42897 * 113.99744 * 180.02562 * 4 3 2 6 6 H 1.08995 * 109.47637 * 29.99927 * 5 4 3 7 7 C 1.53003 * 109.47283 * 269.99719 * 5 4 3 8 8 C 1.50706 * 109.46739 * 150.00534 * 5 4 3 9 9 O 1.20818 * 119.99831 * 4.98952 * 8 5 4 10 10 O 1.34224 * 119.99808 * 184.99999 * 8 5 4 11 11 C 1.45204 * 116.99816 * 179.97438 * 10 8 5 12 12 C 1.50708 * 109.47076 * 179.97438 * 11 10 8 13 13 O 1.21284 * 119.99767 * 5.12624 * 12 11 10 14 14 N 1.34775 * 119.99812 * 185.12903 * 12 11 10 15 15 C 1.46499 * 119.99412 * 185.22157 * 14 12 11 16 16 C 1.50695 * 109.47662 * 89.99937 * 15 14 12 17 17 H 1.08002 * 119.99827 * 359.97438 * 16 15 14 18 18 C 1.37879 * 120.00464 * 179.97438 * 16 15 14 19 19 N 1.31511 * 119.99775 * 359.97438 * 18 16 15 20 20 Si 1.86799 * 120.00192 * 179.97438 * 18 16 15 21 21 H 1.48506 * 109.46970 * 359.97438 * 20 18 16 22 22 H 1.48502 * 109.47103 * 119.99626 * 20 18 16 23 23 H 1.48494 * 109.46922 * 239.99769 * 20 18 16 24 24 C 1.39919 * 119.99927 * 5.21341 * 14 12 11 25 25 C 1.38873 * 120.07478 * 292.47300 * 24 14 12 26 26 C 1.38111 * 119.92660 * 179.74553 * 25 24 14 27 27 C 1.38274 * 120.07232 * 0.53874 * 26 25 24 28 28 C 1.38278 * 120.14496 * 359.74115 * 27 26 25 29 29 C 1.38118 * 120.06897 * 359.97438 * 28 27 26 30 30 H 4.38450 * 5.44481 * 179.97438 * 4 1 2 31 31 H 1.09003 * 109.47213 * 8.36796 * 3 2 1 32 32 H 1.09000 * 109.46921 * 128.36359 * 3 2 1 33 33 H 1.09004 * 109.47028 * 300.00847 * 7 5 4 34 34 H 1.09005 * 109.47030 * 60.00272 * 7 5 4 35 35 H 1.08991 * 109.47419 * 180.02562 * 7 5 4 36 36 H 1.08996 * 109.47087 * 299.99537 * 11 10 8 37 37 H 1.08991 * 109.47093 * 60.00144 * 11 10 8 38 38 H 1.09006 * 109.46548 * 209.99589 * 15 14 12 39 39 H 1.08997 * 109.47215 * 329.99125 * 15 14 12 40 40 H 0.96996 * 120.00256 * 180.02562 * 19 18 16 41 41 H 1.07998 * 120.03332 * 0.03630 * 25 24 14 42 42 H 1.08007 * 119.96044 * 180.27472 * 26 25 24 43 43 H 1.08005 * 119.93192 * 179.71762 * 27 26 25 44 44 H 1.07999 * 119.97119 * 180.02562 * 28 27 26 45 45 H 1.07997 * 120.03803 * 180.02562 * 29 28 27 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.1740 0.0000 0.0000 3 6 2.6459 0.0007 0.0000 4 8 3.1221 0.4976 1.2524 5 6 4.5466 0.5404 1.3569 6 1 4.9788 0.7019 0.3695 7 6 5.0562 -0.7853 1.9260 8 6 4.9494 1.6678 2.2723 9 8 4.1037 2.3057 2.8533 10 8 6.2477 1.9633 2.4419 11 6 6.5621 3.0619 3.3378 12 6 8.0566 3.2450 3.4030 13 8 8.7802 2.5839 2.6886 14 7 8.5889 4.1432 4.2553 15 6 10.0304 4.4036 4.2386 16 6 10.3279 5.5211 3.2723 17 1 9.5237 5.9901 2.7249 18 6 11.6269 5.9447 3.0869 19 7 12.6062 5.3740 3.7538 20 14 11.9957 7.3294 1.8886 21 1 10.7300 7.7984 1.2693 22 1 12.6386 8.4542 2.6144 23 1 12.9116 6.8361 0.8289 24 6 7.7646 4.8269 5.1558 25 6 6.8352 5.7467 4.6881 26 6 6.0196 6.4160 5.5792 27 6 6.1353 6.1793 6.9367 28 6 7.0637 5.2684 7.4061 29 6 7.8783 4.5914 6.5197 30 1 -1.0501 0.0001 -0.0002 31 1 3.0097 -1.0159 -0.1496 32 1 3.0089 0.6386 -0.8058 33 1 4.6240 -0.9469 2.9135 34 1 4.7648 -1.6008 1.2640 35 1 6.1427 -0.7526 2.0062 36 1 6.0995 3.9767 2.9672 37 1 6.1799 2.8392 4.3339 38 1 10.3594 4.6900 5.2376 39 1 10.5588 3.5029 3.9263 40 1 13.5199 5.6722 3.6237 41 1 6.7471 5.9349 3.6283 42 1 5.2935 7.1281 5.2157 43 1 5.4994 6.7073 7.6319 44 1 7.1514 5.0854 8.4668 45 1 8.6030 3.8798 6.8868 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000837852076.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:09:02 Heat of formation + Delta-G solvation = -65.926414 kcal Electronic energy + Delta-G solvation = -29430.360184 eV Core-core repulsion = 25187.840253 eV Total energy + Delta-G solvation = -4242.519931 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 345.145 amu Computer time = 0.65 seconds Orbital eigenvalues (eV) -40.80235 -39.89160 -38.63688 -38.06040 -36.30794 -34.92242 -33.86328 -32.78630 -31.84492 -30.79548 -29.56528 -29.02877 -27.52241 -26.75927 -24.73756 -23.01049 -22.54030 -22.12555 -21.00098 -19.27765 -19.10330 -17.75948 -17.72006 -16.98024 -16.82733 -16.48661 -16.20582 -15.96837 -15.87174 -15.43482 -14.99475 -14.76910 -14.34862 -14.19760 -14.04595 -13.55498 -13.29529 -13.20187 -13.01267 -12.84004 -12.60753 -12.43129 -12.33816 -12.18372 -11.75834 -11.52541 -11.27625 -11.12155 -11.08384 -10.94211 -10.88337 -10.71687 -10.69151 -10.45938 -10.23816 -9.98134 -9.80097 -9.47487 -8.73850 -8.65224 -8.50090 -7.79549 -6.12387 -4.17363 1.49528 1.59601 1.77711 2.06406 2.44048 2.46905 3.04680 3.26272 3.33683 3.37442 3.50234 3.72382 3.96910 4.17442 4.38233 4.45084 4.55827 4.64203 4.72855 4.77380 4.96499 5.09278 5.14124 5.18125 5.23174 5.25660 5.31775 5.34684 5.36790 5.52719 5.62879 5.77012 5.82650 5.95407 6.20962 6.26692 6.53390 6.55311 6.68833 6.71918 6.87781 7.13032 7.19879 7.24798 7.35860 7.64416 7.82805 8.09835 8.16169 8.67128 8.87152 9.47451 10.96038 Molecular weight = 345.15amu Principal moments of inertia in cm(-1) A = 0.010678 B = 0.002736 C = 0.002409 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2621.693815 B =10232.547954 C =11621.120671 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.169 4.169 2 C -0.194 4.194 3 C 0.171 3.829 4 O -0.355 6.355 5 C 0.102 3.898 6 H 0.107 0.893 7 C -0.171 4.171 8 C 0.460 3.540 9 O -0.486 6.486 10 O -0.327 6.327 11 C 0.051 3.949 12 C 0.518 3.482 13 O -0.506 6.506 14 N -0.555 5.555 15 C 0.248 3.752 16 C -0.529 4.529 17 H 0.059 0.941 18 C 0.063 3.937 19 N -0.892 5.892 20 Si 0.900 3.100 21 H -0.273 1.273 22 H -0.283 1.283 23 H -0.282 1.282 24 C 0.152 3.848 25 C -0.127 4.127 26 C -0.107 4.107 27 C -0.131 4.131 28 C -0.109 4.109 29 C -0.122 4.122 30 H 0.223 0.777 31 H 0.081 0.919 32 H 0.080 0.920 33 H 0.071 0.929 34 H 0.075 0.925 35 H 0.089 0.911 36 H 0.100 0.900 37 H 0.096 0.904 38 H 0.039 0.961 39 H 0.051 0.949 40 H 0.264 0.736 41 H 0.123 0.877 42 H 0.122 0.878 43 H 0.120 0.880 44 H 0.123 0.877 45 H 0.126 0.874 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -19.250 -8.426 -0.874 21.031 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.186 4.186 2 C -0.194 4.194 3 C 0.096 3.904 4 O -0.275 6.275 5 C 0.043 3.957 6 H 0.124 0.876 7 C -0.229 4.229 8 C 0.300 3.700 9 O -0.372 6.372 10 O -0.242 6.242 11 C -0.026 4.026 12 C 0.304 3.696 13 O -0.380 6.380 14 N -0.284 5.284 15 C 0.131 3.869 16 C -0.568 4.568 17 H 0.077 0.923 18 C -0.139 4.139 19 N -0.531 5.531 20 Si 0.727 3.273 21 H -0.197 1.197 22 H -0.209 1.209 23 H -0.208 1.208 24 C 0.060 3.940 25 C -0.146 4.146 26 C -0.126 4.126 27 C -0.149 4.149 28 C -0.127 4.127 29 C -0.141 4.141 30 H 0.239 0.761 31 H 0.099 0.901 32 H 0.098 0.902 33 H 0.090 0.910 34 H 0.094 0.906 35 H 0.108 0.892 36 H 0.118 0.882 37 H 0.114 0.886 38 H 0.057 0.943 39 H 0.069 0.931 40 H 0.074 0.926 41 H 0.141 0.859 42 H 0.140 0.860 43 H 0.138 0.862 44 H 0.141 0.859 45 H 0.144 0.856 Dipole moment (debyes) X Y Z Total from point charges -18.942 -8.537 -0.930 20.797 hybrid contribution 0.227 1.070 -0.683 1.290 sum -18.715 -7.467 -1.613 20.214 Atomic orbital electron populations 1.24990 0.95896 1.00146 0.97542 1.22370 0.93728 1.01056 1.02244 1.19208 0.85108 0.99689 0.86413 1.88071 1.18696 1.85829 1.34875 1.21363 0.82594 0.92755 0.98957 0.87576 1.22258 1.03264 0.94611 1.02751 1.23328 0.81023 0.84190 0.81431 1.90697 1.51673 1.49749 1.45090 1.86499 1.26384 1.49985 1.61361 1.22975 0.95811 0.89377 0.94423 1.19691 0.88218 0.80789 0.80944 1.90723 1.61678 1.44954 1.40617 1.45866 1.10588 1.38308 1.33659 1.19519 0.71223 0.97998 0.98126 1.21387 0.93080 1.17857 1.24442 0.92267 1.24911 0.95895 0.97012 0.96116 1.69930 0.99986 1.41711 1.41471 0.86409 0.78417 0.81595 0.80838 1.19739 1.20867 1.20775 1.17794 0.92477 0.94089 0.89614 1.21387 0.97114 0.95743 1.00395 1.20986 0.98991 0.99380 0.93212 1.21093 0.99256 0.99090 0.95502 1.20988 0.95825 0.96620 0.99297 1.21302 0.99955 1.00635 0.92238 0.76057 0.90132 0.90220 0.90951 0.90592 0.89248 0.88161 0.88569 0.94290 0.93053 0.92616 0.85861 0.85956 0.86224 0.85921 0.85578 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -1.39 19.25 29.55 0.57 -0.82 16 2 C -0.19 -1.89 13.73 -37.13 -0.51 -2.40 16 3 C 0.17 1.43 6.22 34.37 0.21 1.64 16 4 O -0.36 -4.17 9.48 -55.14 -0.52 -4.69 16 5 C 0.10 1.08 3.24 -27.88 -0.09 0.99 16 6 H 0.11 0.84 7.79 -51.93 -0.40 0.44 16 7 C -0.17 -1.47 9.50 37.16 0.35 -1.12 16 8 C 0.46 6.70 7.29 36.01 0.26 6.97 16 9 O -0.49 -8.38 16.25 -25.46 -0.41 -8.80 16 10 O -0.33 -5.31 9.75 -45.87 -0.45 -5.75 16 11 C 0.05 0.86 4.46 36.01 0.16 1.02 16 12 C 0.52 10.84 7.65 -10.98 -0.08 10.76 16 13 O -0.51 -12.45 16.06 -14.05 -0.23 -12.67 16 14 N -0.55 -11.81 2.51 -114.74 -0.29 -12.09 16 15 C 0.25 6.37 5.15 -5.20 -0.03 6.35 16 16 C -0.53 -14.74 9.39 -34.44 -0.32 -15.06 16 17 H 0.06 1.65 7.81 -52.49 -0.41 1.24 16 18 C 0.06 1.78 5.46 -17.82 -0.10 1.68 16 19 N -0.89 -26.03 13.29 55.43 0.74 -25.30 16 20 Si 0.90 21.64 29.54 -169.99 -5.02 16.61 16 21 H -0.27 -6.47 7.11 56.52 0.40 -6.07 16 22 H -0.28 -6.66 7.11 56.52 0.40 -6.26 16 23 H -0.28 -6.74 7.11 56.52 0.40 -6.34 16 24 C 0.15 2.74 4.43 -83.69 -0.37 2.37 16 25 C -0.13 -2.05 8.45 -39.39 -0.33 -2.38 16 26 C -0.11 -1.44 10.04 -39.61 -0.40 -1.84 16 27 C -0.13 -1.63 10.04 -39.55 -0.40 -2.03 16 28 C -0.11 -1.43 10.04 -39.61 -0.40 -1.83 16 29 C -0.12 -1.93 9.66 -39.39 -0.38 -2.31 16 30 H 0.22 0.97 7.80 -54.08 -0.42 0.54 16 31 H 0.08 0.46 7.87 -51.93 -0.41 0.05 16 32 H 0.08 0.52 8.08 -51.93 -0.42 0.10 16 33 H 0.07 0.67 8.14 -51.93 -0.42 0.25 16 34 H 0.08 0.46 7.87 -51.93 -0.41 0.05 16 35 H 0.09 0.79 8.14 -51.93 -0.42 0.37 16 36 H 0.10 1.58 6.88 -51.93 -0.36 1.22 16 37 H 0.10 1.49 7.86 -51.93 -0.41 1.08 16 38 H 0.04 1.02 7.84 -51.93 -0.41 0.61 16 39 H 0.05 1.46 7.36 -51.93 -0.38 1.08 16 40 H 0.26 7.26 8.31 -40.82 -0.34 6.92 16 41 H 0.12 1.97 7.55 -52.49 -0.40 1.57 16 42 H 0.12 1.34 8.06 -52.48 -0.42 0.92 16 43 H 0.12 1.15 8.06 -52.48 -0.42 0.73 16 44 H 0.12 1.28 8.06 -52.49 -0.42 0.85 16 45 H 0.13 1.94 8.06 -52.49 -0.42 1.52 16 LS Contribution 403.76 15.07 6.08 6.08 Total: -1.00 -35.70 403.76 -8.04 -43.75 By element: Atomic # 1 Polarization: 6.96 SS G_CDS: -6.10 Total: 0.87 kcal Atomic # 6 Polarization: 3.84 SS G_CDS: -1.85 Total: 1.99 kcal Atomic # 7 Polarization: -37.84 SS G_CDS: 0.45 Total: -37.39 kcal Atomic # 8 Polarization: -30.31 SS G_CDS: -1.61 Total: -31.92 kcal Atomic # 14 Polarization: 21.64 SS G_CDS: -5.02 Total: 16.61 kcal Total LS contribution 6.08 Total: 6.08 kcal Total: -35.70 -8.04 -43.75 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000837852076.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -22.178 kcal (2) G-P(sol) polarization free energy of solvation -35.704 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -57.883 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.044 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.748 kcal (6) G-S(sol) free energy of system = (1) + (5) -65.926 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.65 seconds