Wall clock time and date at job start Wed Apr 1 2020 03:09:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.17397 * 1 3 3 C 1.47194 * 179.97438 * 2 1 4 4 O 1.42904 * 109.47303 * 248.36419 * 3 2 1 5 5 C 1.42897 * 113.99744 * 180.02562 * 4 3 2 6 6 H 1.08995 * 109.47637 * 29.99927 * 5 4 3 7 7 C 1.53003 * 109.47283 * 269.99719 * 5 4 3 8 8 C 1.50706 * 109.46739 * 150.00534 * 5 4 3 9 9 O 1.20818 * 119.99831 * 4.98952 * 8 5 4 10 10 O 1.34224 * 119.99808 * 184.99999 * 8 5 4 11 11 C 1.45204 * 116.99816 * 179.97438 * 10 8 5 12 12 C 1.50708 * 109.47076 * 179.97438 * 11 10 8 13 13 O 1.21284 * 119.99767 * 5.12624 * 12 11 10 14 14 N 1.34775 * 119.99812 * 185.12903 * 12 11 10 15 15 C 1.46499 * 119.99412 * 185.22157 * 14 12 11 16 16 C 1.50695 * 109.47662 * 89.99937 * 15 14 12 17 17 H 1.08002 * 119.99827 * 359.97438 * 16 15 14 18 18 C 1.37879 * 120.00464 * 179.97438 * 16 15 14 19 19 N 1.31511 * 119.99775 * 359.97438 * 18 16 15 20 20 Si 1.86799 * 120.00192 * 179.97438 * 18 16 15 21 21 H 1.48506 * 109.46970 * 359.97438 * 20 18 16 22 22 H 1.48502 * 109.47103 * 119.99626 * 20 18 16 23 23 H 1.48494 * 109.46922 * 239.99769 * 20 18 16 24 24 C 1.39919 * 119.99927 * 5.21341 * 14 12 11 25 25 C 1.38873 * 120.07478 * 292.47300 * 24 14 12 26 26 C 1.38111 * 119.92660 * 179.74553 * 25 24 14 27 27 C 1.38274 * 120.07232 * 0.53874 * 26 25 24 28 28 C 1.38278 * 120.14496 * 359.74115 * 27 26 25 29 29 C 1.38118 * 120.06897 * 359.97438 * 28 27 26 30 30 H 4.38450 * 5.44481 * 179.97438 * 4 1 2 31 31 H 1.09003 * 109.47213 * 8.36796 * 3 2 1 32 32 H 1.09000 * 109.46921 * 128.36359 * 3 2 1 33 33 H 1.09004 * 109.47028 * 300.00847 * 7 5 4 34 34 H 1.09005 * 109.47030 * 60.00272 * 7 5 4 35 35 H 1.08991 * 109.47419 * 180.02562 * 7 5 4 36 36 H 1.08996 * 109.47087 * 299.99537 * 11 10 8 37 37 H 1.08991 * 109.47093 * 60.00144 * 11 10 8 38 38 H 1.09006 * 109.46548 * 209.99589 * 15 14 12 39 39 H 1.08997 * 109.47215 * 329.99125 * 15 14 12 40 40 H 0.96996 * 120.00256 * 180.02562 * 19 18 16 41 41 H 1.07998 * 120.03332 * 0.03630 * 25 24 14 42 42 H 1.08007 * 119.96044 * 180.27472 * 26 25 24 43 43 H 1.08005 * 119.93192 * 179.71762 * 27 26 25 44 44 H 1.07999 * 119.97119 * 180.02562 * 28 27 26 45 45 H 1.07997 * 120.03803 * 180.02562 * 29 28 27 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.1740 0.0000 0.0000 3 6 2.6459 0.0007 0.0000 4 8 3.1221 0.4976 1.2524 5 6 4.5466 0.5404 1.3569 6 1 4.9788 0.7019 0.3695 7 6 5.0562 -0.7853 1.9260 8 6 4.9494 1.6678 2.2723 9 8 4.1037 2.3057 2.8533 10 8 6.2477 1.9633 2.4419 11 6 6.5621 3.0619 3.3378 12 6 8.0566 3.2450 3.4030 13 8 8.7802 2.5839 2.6886 14 7 8.5889 4.1432 4.2553 15 6 10.0304 4.4036 4.2386 16 6 10.3279 5.5211 3.2723 17 1 9.5237 5.9901 2.7249 18 6 11.6269 5.9447 3.0869 19 7 12.6062 5.3740 3.7538 20 14 11.9957 7.3294 1.8886 21 1 10.7300 7.7984 1.2693 22 1 12.6386 8.4542 2.6144 23 1 12.9116 6.8361 0.8289 24 6 7.7646 4.8269 5.1558 25 6 6.8352 5.7467 4.6881 26 6 6.0196 6.4160 5.5792 27 6 6.1353 6.1793 6.9367 28 6 7.0637 5.2684 7.4061 29 6 7.8783 4.5914 6.5197 30 1 -1.0501 0.0001 -0.0002 31 1 3.0097 -1.0159 -0.1496 32 1 3.0089 0.6386 -0.8058 33 1 4.6240 -0.9469 2.9135 34 1 4.7648 -1.6008 1.2640 35 1 6.1427 -0.7526 2.0062 36 1 6.0995 3.9767 2.9672 37 1 6.1799 2.8392 4.3339 38 1 10.3594 4.6900 5.2376 39 1 10.5588 3.5029 3.9263 40 1 13.5199 5.6722 3.6237 41 1 6.7471 5.9349 3.6283 42 1 5.2935 7.1281 5.2157 43 1 5.4994 6.7073 7.6319 44 1 7.1514 5.0854 8.4668 45 1 8.6030 3.8798 6.8868 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000837852076.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:09:01 Heat of formation + Delta-G solvation = -85.795115 kcal Electronic energy + Delta-G solvation = -29431.221756 eV Core-core repulsion = 25187.840253 eV Total energy + Delta-G solvation = -4243.381502 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 345.145 amu Computer time = 0.85 seconds Orbital eigenvalues (eV) -42.06855 -41.28485 -39.66312 -39.28293 -37.58529 -36.57948 -34.84948 -34.51940 -32.66587 -31.95641 -31.13170 -30.37234 -28.55523 -28.14664 -25.80937 -24.79686 -23.81993 -23.38996 -22.08553 -20.74869 -19.85340 -19.03367 -18.76633 -18.69130 -18.08572 -17.86233 -17.43832 -17.16137 -17.06366 -16.66803 -16.36110 -16.18795 -15.68120 -15.39206 -15.21571 -14.73334 -14.56310 -14.34326 -14.25630 -14.02070 -13.87858 -13.64980 -13.55509 -13.41920 -13.22437 -13.07010 -12.70260 -12.57660 -12.47827 -12.23057 -12.16268 -12.01214 -11.82914 -11.74403 -11.64166 -11.44121 -11.13264 -10.69368 -10.66597 -10.18897 -9.87227 -9.33029 -8.27420 -6.42002 0.29460 0.46011 0.78837 0.92210 1.34356 1.36479 1.41401 1.49668 1.57681 1.81261 2.16093 2.36915 2.81170 2.92090 3.03089 3.25588 3.39238 3.58307 3.78966 3.81046 3.87031 3.91598 4.05930 4.08319 4.23753 4.28966 4.43700 4.55813 4.60384 4.66730 4.66988 4.72839 4.95868 5.00376 5.05520 5.08785 5.12384 5.18226 5.34084 5.49601 5.58872 5.60884 5.69183 5.82656 5.96072 6.00954 6.43393 6.54819 6.58649 6.64431 7.04706 7.28680 8.80518 Molecular weight = 345.15amu Principal moments of inertia in cm(-1) A = 0.010678 B = 0.002736 C = 0.002409 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2621.693815 B =10232.547954 C =11621.120671 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.161 4.161 2 C -0.239 4.239 3 C 0.163 3.837 4 O -0.383 6.383 5 C 0.106 3.894 6 H 0.136 0.864 7 C -0.167 4.167 8 C 0.458 3.542 9 O -0.517 6.517 10 O -0.338 6.338 11 C 0.067 3.933 12 C 0.513 3.487 13 O -0.555 6.555 14 N -0.554 5.554 15 C 0.265 3.735 16 C -0.544 4.544 17 H 0.053 0.947 18 C 0.011 3.989 19 N -0.925 5.925 20 Si 0.968 3.032 21 H -0.267 1.267 22 H -0.270 1.270 23 H -0.278 1.278 24 C 0.113 3.887 25 C -0.139 4.139 26 C -0.104 4.104 27 C -0.118 4.118 28 C -0.103 4.103 29 C -0.136 4.136 30 H 0.253 0.747 31 H 0.108 0.892 32 H 0.095 0.905 33 H 0.061 0.939 34 H 0.107 0.893 35 H 0.084 0.916 36 H 0.112 0.888 37 H 0.110 0.890 38 H 0.027 0.973 39 H 0.012 0.988 40 H 0.269 0.731 41 H 0.116 0.884 42 H 0.153 0.847 43 H 0.160 0.840 44 H 0.155 0.845 45 H 0.119 0.881 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -21.671 -7.358 -0.774 22.899 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.178 4.178 2 C -0.240 4.240 3 C 0.089 3.911 4 O -0.303 6.303 5 C 0.048 3.952 6 H 0.154 0.846 7 C -0.224 4.224 8 C 0.301 3.699 9 O -0.404 6.404 10 O -0.253 6.253 11 C -0.010 4.010 12 C 0.301 3.699 13 O -0.433 6.433 14 N -0.282 5.282 15 C 0.146 3.854 16 C -0.583 4.583 17 H 0.072 0.928 18 C -0.188 4.188 19 N -0.564 5.564 20 Si 0.792 3.208 21 H -0.192 1.192 22 H -0.195 1.195 23 H -0.203 1.203 24 C 0.023 3.977 25 C -0.159 4.159 26 C -0.122 4.122 27 C -0.135 4.135 28 C -0.121 4.121 29 C -0.156 4.156 30 H 0.269 0.731 31 H 0.126 0.874 32 H 0.113 0.887 33 H 0.081 0.919 34 H 0.125 0.875 35 H 0.103 0.897 36 H 0.130 0.870 37 H 0.128 0.872 38 H 0.045 0.955 39 H 0.030 0.970 40 H 0.078 0.922 41 H 0.134 0.866 42 H 0.170 0.830 43 H 0.178 0.822 44 H 0.173 0.827 45 H 0.137 0.863 Dipole moment (debyes) X Y Z Total from point charges -21.403 -7.462 -0.805 22.681 hybrid contribution 0.855 0.737 -0.623 1.289 sum -20.548 -6.726 -1.428 21.668 Atomic orbital electron populations 1.25882 0.96912 0.98930 0.96042 1.23035 0.94912 1.02346 1.03657 1.19524 0.84691 1.01463 0.85431 1.88023 1.19001 1.86351 1.36887 1.21551 0.82689 0.91671 0.99327 0.84644 1.22261 1.02763 0.94424 1.02926 1.24284 0.79818 0.84529 0.81264 1.90669 1.52071 1.51096 1.46572 1.86518 1.27855 1.49710 1.61255 1.22708 0.92359 0.90370 0.95543 1.20374 0.89904 0.79755 0.79911 1.90679 1.63208 1.46777 1.42646 1.45650 1.09393 1.38694 1.34511 1.18951 0.74036 0.95602 0.96786 1.21617 0.93326 1.18416 1.24898 0.92834 1.25823 0.95638 0.99547 0.97823 1.70041 1.00469 1.43111 1.42772 0.85354 0.78343 0.78563 0.78501 1.19155 1.19502 1.20347 1.18065 0.93773 0.95989 0.89886 1.21439 0.97606 0.96063 1.00777 1.21365 0.98505 0.98923 0.93434 1.21595 0.98450 0.97812 0.95683 1.21373 0.94693 0.95620 1.00426 1.21412 1.00855 1.01451 0.91885 0.73120 0.87429 0.88684 0.91942 0.87476 0.89708 0.87023 0.87164 0.95491 0.96996 0.92210 0.86577 0.82959 0.82192 0.82700 0.86327 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.40 19.25 74.32 1.43 -0.97 16 2 C -0.24 -4.40 13.73 31.12 0.43 -3.98 16 3 C 0.16 2.47 6.22 70.17 0.44 2.90 16 4 O -0.38 -8.60 9.48 -129.95 -1.23 -9.83 16 5 C 0.11 2.14 3.24 29.85 0.10 2.24 16 6 H 0.14 1.89 7.79 -2.39 -0.02 1.88 16 7 C -0.17 -2.66 9.50 71.98 0.68 -1.98 16 8 C 0.46 13.37 7.29 71.24 0.52 13.89 16 9 O -0.52 -17.86 16.25 28.41 0.46 -17.40 16 10 O -0.34 -11.21 9.75 -45.02 -0.44 -11.65 16 11 C 0.07 2.33 4.46 71.24 0.32 2.64 16 12 C 0.51 22.72 7.65 87.66 0.67 23.39 16 13 O -0.56 -29.16 16.06 15.70 0.25 -28.91 16 14 N -0.55 -24.97 2.51 -635.31 -1.59 -26.56 16 15 C 0.27 14.53 5.15 85.63 0.44 14.97 16 16 C -0.54 -31.52 9.39 25.60 0.24 -31.28 16 17 H 0.05 3.08 7.81 -2.91 -0.02 3.06 16 18 C 0.01 0.64 5.46 84.66 0.46 1.11 16 19 N -0.92 -55.52 13.29 21.45 0.28 -55.24 16 20 Si 0.97 44.85 29.54 68.60 2.03 46.88 16 21 H -0.27 -12.03 7.11 99.48 0.71 -11.32 16 22 H -0.27 -11.89 7.11 99.48 0.71 -11.18 16 23 H -0.28 -12.63 7.11 99.48 0.71 -11.93 16 24 C 0.11 4.18 4.43 38.16 0.17 4.35 16 25 C -0.14 -4.44 8.45 22.39 0.19 -4.26 16 26 C -0.10 -2.51 10.04 22.25 0.22 -2.29 16 27 C -0.12 -2.47 10.04 22.29 0.22 -2.24 16 28 C -0.10 -2.44 10.04 22.25 0.22 -2.21 16 29 C -0.14 -4.35 9.66 22.39 0.22 -4.13 16 30 H 0.25 1.60 7.80 -4.41 -0.03 1.57 16 31 H 0.11 0.97 7.87 -2.39 -0.02 0.95 16 32 H 0.10 1.08 8.08 -2.39 -0.02 1.06 16 33 H 0.06 1.12 8.14 -2.38 -0.02 1.10 16 34 H 0.11 1.04 7.87 -2.38 -0.02 1.02 16 35 H 0.08 1.45 8.14 -2.39 -0.02 1.43 16 36 H 0.11 3.60 6.88 -2.39 -0.02 3.58 16 37 H 0.11 3.49 7.86 -2.39 -0.02 3.47 16 38 H 0.03 1.51 7.84 -2.38 -0.02 1.49 16 39 H 0.01 0.74 7.36 -2.39 -0.02 0.72 16 40 H 0.27 15.06 8.31 -92.71 -0.77 14.28 16 41 H 0.12 3.77 7.55 -2.91 -0.02 3.74 16 42 H 0.15 2.74 8.06 -2.91 -0.02 2.72 16 43 H 0.16 2.14 8.06 -2.91 -0.02 2.12 16 44 H 0.16 2.65 8.06 -2.91 -0.02 2.62 16 45 H 0.12 3.83 8.06 -2.91 -0.02 3.80 16 Total: -1.00 -82.08 403.76 7.72 -74.36 By element: Atomic # 1 Polarization: 15.20 SS G_CDS: 0.99 Total: 16.19 kcal Atomic # 6 Polarization: 5.19 SS G_CDS: 6.97 Total: 12.16 kcal Atomic # 7 Polarization: -80.49 SS G_CDS: -1.31 Total: -81.80 kcal Atomic # 8 Polarization: -66.83 SS G_CDS: -0.96 Total: -67.79 kcal Atomic # 14 Polarization: 44.85 SS G_CDS: 2.03 Total: 46.88 kcal Total: -82.08 7.72 -74.36 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000837852076.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -11.434 kcal (2) G-P(sol) polarization free energy of solvation -82.085 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -93.519 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 7.724 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.361 kcal (6) G-S(sol) free energy of system = (1) + (5) -85.795 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.86 seconds