Wall clock time and date at job start Wed Apr 1 2020 02:47:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.30997 * 1 3 3 C 1.50700 * 119.99920 * 2 1 4 4 H 1.08998 * 109.98943 * 358.91944 * 3 2 1 5 5 O 1.43747 * 109.88030 * 237.83442 * 3 2 1 6 6 C 1.44372 * 106.97753 * 267.09059 * 5 3 2 7 7 C 1.54999 * 103.49045 * 319.94126 * 6 5 3 8 8 C 1.54099 * 109.87750 * 120.00475 * 3 2 1 9 9 H 1.09002 * 110.49025 * 358.58896 * 8 3 2 10 10 C 1.50698 * 110.48972 * 236.07439 * 8 3 2 11 11 O 1.20827 * 120.00023 * 359.97438 * 10 8 3 12 12 O 1.34231 * 120.00226 * 180.02562 * 10 8 3 13 13 C 1.45201 * 116.99730 * 179.97438 * 12 10 8 14 14 C 1.50701 * 109.46720 * 179.97438 * 13 12 10 15 15 O 1.21280 * 120.00061 * 359.97438 * 14 13 12 16 16 N 1.34780 * 119.99951 * 179.72458 * 14 13 12 17 17 C 1.37137 * 120.00001 * 355.22861 * 16 14 13 18 18 H 1.08006 * 120.00131 * 344.74669 * 17 16 14 19 19 C 1.38881 * 120.00047 * 164.73928 * 17 16 14 20 20 N 1.31421 * 120.00338 * 343.63034 * 19 17 16 21 21 Si 1.86807 * 120.00066 * 163.62330 * 19 17 16 22 22 H 1.48502 * 109.46733 * 90.00314 * 21 19 17 23 23 H 1.48500 * 109.47192 * 210.00124 * 21 19 17 24 24 H 1.48501 * 109.47028 * 330.00562 * 21 19 17 25 25 C 1.39786 * 120.00005 * 175.23056 * 16 14 13 26 26 C 1.38963 * 120.07540 * 101.20771 * 25 16 14 27 27 C 1.38092 * 119.91606 * 179.74756 * 26 25 16 28 28 C 1.38302 * 120.07967 * 0.54992 * 27 26 25 29 29 C 1.38312 * 120.15845 * 359.70319 * 28 27 26 30 30 C 1.38081 * 120.07705 * 0.02562 * 29 28 27 31 31 H 1.08002 * 119.99788 * 179.97438 * 1 2 3 32 32 H 1.07993 * 120.00432 * 359.97438 * 1 2 3 33 33 H 1.08001 * 119.99993 * 180.02562 * 2 1 3 34 34 H 1.09004 * 110.62004 * 78.43923 * 6 5 3 35 35 H 1.09003 * 110.62221 * 201.28511 * 6 5 3 36 36 H 1.09002 * 110.90822 * 278.82460 * 7 6 5 37 37 H 1.09004 * 110.90632 * 155.22391 * 7 6 5 38 38 H 1.08998 * 109.47401 * 59.99826 * 13 12 10 39 39 H 1.08998 * 109.47450 * 299.99233 * 13 12 10 40 40 H 0.96996 * 120.00489 * 185.01934 * 20 19 17 41 41 H 1.07988 * 120.03977 * 0.02562 * 26 25 16 42 42 H 1.07996 * 119.95601 * 180.27572 * 27 26 25 43 43 H 1.08002 * 119.92353 * 179.72615 * 28 27 26 44 44 H 1.07998 * 119.96113 * 180.02562 * 29 28 27 45 45 H 1.07997 * 120.04398 * 180.02562 * 30 29 28 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3100 0.0000 0.0000 3 6 2.0635 1.3051 0.0000 4 1 1.3628 2.1399 -0.0193 5 8 2.9311 1.3686 -1.1443 6 6 4.2185 0.8670 -0.7256 7 6 4.3945 1.4632 0.6943 8 6 2.9530 1.3965 1.2550 9 1 2.8248 0.5119 1.8788 10 6 2.6335 2.6436 2.0383 11 8 1.7780 3.4011 1.6457 12 8 3.3001 2.9135 3.1718 13 6 2.9401 4.1324 3.8739 14 6 3.7864 4.2666 5.1135 15 8 4.6113 3.4183 5.3794 16 7 3.6301 5.3320 5.9241 17 6 2.7718 6.3419 5.5715 18 1 2.4123 6.4150 4.5557 19 6 2.3649 7.2705 6.5206 20 7 2.5266 7.0167 7.7999 21 14 1.5878 8.8806 5.9789 22 1 0.1161 8.7101 5.8768 23 1 1.8958 9.9385 6.9744 24 1 2.1337 9.2728 4.6547 25 6 4.3427 5.4076 7.1243 26 6 5.4778 6.2047 7.2112 27 6 6.1763 6.2810 8.3999 28 6 5.7541 5.5567 9.4998 29 6 4.6278 4.7583 9.4154 30 6 3.9212 4.6814 8.2316 31 1 -0.5400 -0.9353 -0.0004 32 1 -0.5400 0.9352 0.0004 33 1 1.8500 -0.9353 -0.0004 34 1 4.2118 -0.2223 -0.6863 35 1 5.0041 1.2210 -1.3932 36 1 4.7444 2.4942 0.6426 37 1 5.0726 0.8531 1.2910 38 1 1.8878 4.0924 4.1553 39 1 3.1098 4.9902 3.2231 40 1 2.1773 7.6310 8.4642 41 1 5.8105 6.7671 6.3515 42 1 7.0559 6.9037 8.4695 43 1 6.3049 5.6148 10.4270 44 1 4.3007 4.1943 10.2764 45 1 3.0416 4.0582 8.1664 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000838002803.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 02:47:25 Heat of formation + Delta-G solvation = -96.129650 kcal Electronic energy + Delta-G solvation = -29997.348783 eV Core-core repulsion = 25753.519142 eV Total energy + Delta-G solvation = -4243.829642 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 345.145 amu Computer time = 0.81 seconds Orbital eigenvalues (eV) -40.88993 -39.58816 -39.02796 -37.34116 -36.07818 -34.81248 -33.96342 -32.63401 -31.80813 -29.94252 -29.72769 -28.86874 -27.47526 -25.07566 -24.18205 -22.66037 -21.73018 -21.57114 -20.43871 -20.05254 -19.43930 -18.02263 -17.77697 -16.91101 -16.48588 -16.30282 -15.96932 -15.76757 -15.53863 -14.93332 -14.74410 -14.59343 -14.23706 -14.00590 -13.75716 -13.48275 -13.29133 -13.03259 -12.59961 -12.48760 -12.28425 -12.16846 -11.97522 -11.72883 -11.64079 -11.54531 -11.51633 -11.21599 -11.15940 -11.02374 -10.59660 -10.46294 -10.40459 -10.35988 -10.27969 -9.96183 -9.66919 -9.52386 -8.74017 -8.25797 -7.92431 -7.64910 -6.36719 -4.16345 1.93175 2.26603 2.37272 2.45321 2.65489 3.01494 3.13855 3.16264 3.54337 3.78365 3.93014 4.19853 4.31239 4.39546 4.70599 4.77607 4.84305 4.87798 4.92681 4.95759 5.13542 5.21611 5.46316 5.50874 5.59166 5.63460 5.71906 5.74869 5.75335 5.80724 5.83310 5.87222 5.97071 6.31588 6.35841 6.46687 6.50809 6.59741 6.65072 6.73686 6.98642 7.18434 7.27311 7.40018 7.50684 7.67923 7.84168 7.89198 8.29840 8.85056 9.17137 9.59924 10.47730 Molecular weight = 345.15amu Principal moments of inertia in cm(-1) A = 0.013774 B = 0.002818 C = 0.002538 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2032.273396 B = 9935.040602 C =11031.558970 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.165 4.165 2 C -0.179 4.179 3 C 0.110 3.890 4 H 0.122 0.878 5 O -0.361 6.361 6 C 0.044 3.956 7 C -0.141 4.141 8 C -0.110 4.110 9 H 0.124 0.876 10 C 0.469 3.531 11 O -0.507 6.507 12 O -0.328 6.328 13 C 0.072 3.928 14 C 0.463 3.537 15 O -0.577 6.577 16 N -0.405 5.405 17 C -0.364 4.364 18 H 0.104 0.896 19 C 0.050 3.950 20 N -0.842 5.842 21 Si 0.921 3.079 22 H -0.275 1.275 23 H -0.280 1.280 24 H -0.267 1.267 25 C 0.237 3.763 26 C -0.121 4.121 27 C -0.123 4.123 28 C -0.144 4.144 29 C -0.121 4.121 30 C -0.066 4.066 31 H 0.103 0.897 32 H 0.102 0.898 33 H 0.113 0.887 34 H 0.065 0.935 35 H 0.099 0.901 36 H 0.086 0.914 37 H 0.098 0.902 38 H 0.097 0.903 39 H 0.092 0.908 40 H 0.274 0.726 41 H 0.108 0.892 42 H 0.107 0.893 43 H 0.105 0.895 44 H 0.107 0.893 45 H 0.105 0.895 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.911 -9.093 -8.694 12.614 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C -0.198 4.198 3 C 0.052 3.948 4 H 0.140 0.860 5 O -0.280 6.280 6 C -0.033 4.033 7 C -0.179 4.179 8 C -0.129 4.129 9 H 0.141 0.859 10 C 0.311 3.689 11 O -0.395 6.395 12 O -0.243 6.243 13 C -0.005 4.005 14 C 0.252 3.748 15 O -0.460 6.460 16 N -0.123 5.123 17 C -0.490 4.490 18 H 0.121 0.879 19 C -0.159 4.159 20 N -0.476 5.476 21 Si 0.746 3.254 22 H -0.200 1.200 23 H -0.205 1.205 24 H -0.192 1.192 25 C 0.147 3.853 26 C -0.141 4.141 27 C -0.141 4.141 28 C -0.162 4.162 29 C -0.140 4.140 30 C -0.085 4.085 31 H 0.121 0.879 32 H 0.120 0.880 33 H 0.131 0.869 34 H 0.083 0.917 35 H 0.117 0.883 36 H 0.104 0.896 37 H 0.117 0.883 38 H 0.115 0.885 39 H 0.110 0.890 40 H 0.086 0.914 41 H 0.126 0.874 42 H 0.125 0.875 43 H 0.123 0.877 44 H 0.125 0.875 45 H 0.124 0.876 Dipole moment (debyes) X Y Z Total from point charges 1.019 -9.039 -8.656 12.557 hybrid contribution -0.747 1.107 0.225 1.354 sum 0.272 -7.933 -8.432 11.580 Atomic orbital electron populations 1.23952 0.95776 1.02424 0.98008 1.23243 0.96470 0.98166 1.01893 1.21947 0.92186 0.97240 0.83389 0.86027 1.88991 1.21521 1.84849 1.32598 1.23635 0.86451 0.98478 0.94698 1.23140 0.94206 1.03953 0.96598 1.22385 0.97844 0.95814 0.96851 0.85851 1.23183 0.78870 0.87102 0.79718 1.90649 1.31560 1.48993 1.68331 1.86496 1.59632 1.43132 1.35018 1.22678 1.00413 0.84265 0.93125 1.19478 0.86793 0.82586 0.85978 1.90617 1.37924 1.42048 1.75448 1.41181 1.37180 1.17372 1.16544 1.19621 1.26925 1.05232 0.97223 0.87878 1.25270 0.96428 0.99500 0.94721 1.69932 1.41322 1.36426 0.99940 0.86015 0.79226 0.81217 0.78893 1.20043 1.20485 1.19157 1.17048 0.89259 0.93455 0.85516 1.20980 0.95540 0.99971 0.97592 1.20666 0.99768 1.00411 0.93279 1.20758 0.98110 0.99514 0.97807 1.20688 0.96232 1.00139 0.96935 1.20804 0.97479 0.98268 0.91984 0.87915 0.87998 0.86914 0.91684 0.88324 0.89556 0.88331 0.88532 0.89020 0.91447 0.87412 0.87507 0.87673 0.87479 0.87650 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.51 14.32 29.02 0.42 -1.10 16 2 C -0.18 -1.78 8.87 -36.03 -0.32 -2.10 16 3 C 0.11 1.32 3.44 -27.31 -0.09 1.22 16 4 H 0.12 1.67 6.12 -51.93 -0.32 1.35 16 5 O -0.36 -4.45 11.18 -35.23 -0.39 -4.85 16 6 C 0.04 0.40 7.66 38.21 0.29 0.69 16 7 C -0.14 -1.46 6.70 -24.72 -0.17 -1.63 16 8 C -0.11 -1.33 3.17 -90.25 -0.29 -1.61 16 9 H 0.12 1.28 7.69 -51.93 -0.40 0.88 16 10 C 0.47 7.60 7.14 36.00 0.26 7.86 16 11 O -0.51 -9.18 15.01 -18.75 -0.28 -9.46 16 12 O -0.33 -6.17 9.75 -45.91 -0.45 -6.62 16 13 C 0.07 1.45 4.49 36.01 0.16 1.61 16 14 C 0.46 11.07 7.66 -10.98 -0.08 10.98 16 15 O -0.58 -15.13 16.48 -14.10 -0.23 -15.37 16 16 N -0.40 -9.99 2.66 -58.98 -0.16 -10.14 16 17 C -0.36 -8.86 9.19 -14.94 -0.14 -9.00 16 18 H 0.10 2.35 6.45 -52.48 -0.34 2.01 16 19 C 0.05 1.20 5.24 -17.49 -0.09 1.11 16 20 N -0.84 -21.09 10.34 55.49 0.57 -20.52 16 21 Si 0.92 18.95 29.59 -169.99 -5.03 13.92 16 22 H -0.27 -5.62 7.11 56.52 0.40 -5.22 16 23 H -0.28 -5.81 7.11 56.52 0.40 -5.41 16 24 H -0.27 -5.44 7.11 56.52 0.40 -5.04 16 25 C 0.24 5.79 2.29 -83.69 -0.19 5.60 16 26 C -0.12 -2.76 9.95 -39.37 -0.39 -3.15 16 27 C -0.12 -2.43 10.04 -39.61 -0.40 -2.83 16 28 C -0.14 -2.72 10.04 -39.53 -0.40 -3.12 16 29 C -0.12 -2.44 10.04 -39.61 -0.40 -2.84 16 30 C -0.07 -1.53 8.66 -39.37 -0.34 -1.87 16 31 H 0.10 0.75 8.06 -52.49 -0.42 0.32 16 32 H 0.10 0.96 7.85 -52.49 -0.41 0.55 16 33 H 0.11 0.93 8.06 -52.49 -0.42 0.51 16 34 H 0.06 0.47 8.14 -51.93 -0.42 0.05 16 35 H 0.10 0.74 8.14 -51.93 -0.42 0.32 16 36 H 0.09 0.99 7.86 -51.93 -0.41 0.58 16 37 H 0.10 0.87 8.14 -51.93 -0.42 0.44 16 38 H 0.10 1.90 8.13 -51.93 -0.42 1.48 16 39 H 0.09 1.77 7.51 -51.93 -0.39 1.38 16 40 H 0.27 6.62 8.32 -40.82 -0.34 6.28 16 41 H 0.11 2.39 8.06 -52.49 -0.42 1.96 16 42 H 0.11 1.78 8.06 -52.49 -0.42 1.36 16 43 H 0.11 1.64 8.06 -52.49 -0.42 1.22 16 44 H 0.11 1.84 8.06 -52.49 -0.42 1.42 16 45 H 0.11 2.48 8.06 -52.49 -0.42 2.06 16 LS Contribution 385.99 15.07 5.82 5.82 Total: -1.00 -30.52 385.99 -8.37 -38.89 By element: Atomic # 1 Polarization: 14.55 SS G_CDS: -6.05 Total: 8.50 kcal Atomic # 6 Polarization: 2.00 SS G_CDS: -2.17 Total: -0.17 kcal Atomic # 7 Polarization: -31.08 SS G_CDS: 0.42 Total: -30.66 kcal Atomic # 8 Polarization: -34.94 SS G_CDS: -1.36 Total: -36.30 kcal Atomic # 14 Polarization: 18.95 SS G_CDS: -5.03 Total: 13.92 kcal Total LS contribution 5.82 Total: 5.82 kcal Total: -30.52 -8.37 -38.89 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000838002803.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -57.238 kcal (2) G-P(sol) polarization free energy of solvation -30.520 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -87.758 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.371 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.891 kcal (6) G-S(sol) free energy of system = (1) + (5) -96.130 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.81 seconds