Wall clock time and date at job start Wed Apr 1 2020 03:23:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46493 * 1 3 3 C 1.38507 * 125.83675 * 2 1 4 4 C 1.40116 * 125.92635 * 359.97438 * 3 2 1 5 5 H 1.08002 * 119.99627 * 354.34840 * 4 3 2 6 6 C 1.40033 * 120.00037 * 174.35388 * 4 3 2 7 7 N 1.30800 * 120.00076 * 6.07862 * 6 4 3 8 8 Si 1.86801 * 120.00067 * 186.08015 * 6 4 3 9 9 H 1.48503 * 109.47141 * 94.98029 * 8 6 4 10 10 H 1.48497 * 109.47281 * 214.98360 * 8 6 4 11 11 H 1.48501 * 109.46805 * 334.98228 * 8 6 4 12 12 N 1.32242 * 108.14614 * 179.71796 * 3 2 1 13 13 N 1.40165 * 107.75920 * 0.43196 * 12 3 2 14 14 C 1.46502 * 126.14698 * 179.82711 * 13 12 3 15 15 N 1.46901 * 109.46940 * 269.69185 * 14 13 12 16 16 C 1.48562 * 111.00115 * 69.87147 * 15 14 13 17 17 C 1.54372 * 104.70069 * 159.10120 * 16 15 14 18 18 C 1.54261 * 105.05972 * 336.08773 * 17 16 15 19 19 H 1.09003 * 110.32135 * 118.89727 * 18 17 16 20 20 C 1.50700 * 110.32578 * 241.10369 * 18 17 16 21 21 C 1.38678 * 120.41986 * 238.26699 * 20 18 17 22 22 C 1.38625 * 118.42210 * 179.77977 * 21 20 18 23 23 C 1.38227 * 119.15877 * 0.47638 * 22 21 20 24 24 N 1.31858 * 120.76696 * 359.76579 * 23 22 21 25 25 C 1.31887 * 121.72266 * 0.02562 * 24 23 22 26 26 C 1.48846 * 111.13611 * 185.19119 * 15 14 13 27 27 C 1.34732 * 125.83701 * 179.97438 * 2 1 3 28 28 S 1.71201 * 125.96842 * 0.03466 * 27 2 1 29 29 H 1.08998 * 109.47948 * 270.02812 * 1 2 3 30 30 H 1.09005 * 109.46935 * 30.02790 * 1 2 3 31 31 H 1.09005 * 109.47193 * 150.01948 * 1 2 3 32 32 H 0.96994 * 119.99584 * 179.97438 * 7 6 4 33 33 H 1.08991 * 109.47262 * 149.69317 * 14 13 12 34 34 H 1.08994 * 109.46955 * 29.68863 * 14 13 12 35 35 H 1.08997 * 110.41077 * 40.25852 * 16 15 14 36 36 H 1.09007 * 110.41268 * 277.94074 * 16 15 14 37 37 H 1.08998 * 110.32715 * 94.98602 * 17 16 15 38 38 H 1.09005 * 110.32724 * 217.09094 * 17 16 15 39 39 H 1.07999 * 120.79002 * 0.02562 * 21 20 18 40 40 H 1.07997 * 120.42349 * 180.22299 * 22 21 20 41 41 H 1.08004 * 119.62202 * 179.78684 * 23 22 21 42 42 H 1.08002 * 119.61744 * 180.02562 * 25 24 23 43 43 H 1.09006 * 110.39224 * 82.21521 * 26 15 14 44 44 H 1.09003 * 110.49585 * 319.85344 * 26 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4649 0.0000 0.0000 3 6 2.2759 1.1229 0.0000 4 6 1.8374 2.4536 -0.0005 5 1 0.7844 2.6752 -0.0931 6 6 2.7644 3.4964 0.1189 7 7 4.0462 3.2359 0.1112 8 14 2.1705 5.2592 0.2892 9 1 2.1081 5.6238 1.7274 10 1 3.1122 6.1687 -0.4117 11 1 0.8190 5.3865 -0.3129 12 7 3.5357 0.7210 0.0062 13 7 3.5375 -0.6806 0.0002 14 6 4.7215 -1.5433 0.0003 15 7 5.1174 -1.8317 -1.3846 16 6 5.6640 -0.6188 -2.0457 17 6 6.5028 -1.1590 -3.2237 18 6 6.8828 -2.5981 -2.8184 19 1 6.4763 -3.3128 -3.5341 20 6 8.3806 -2.7388 -2.7298 21 6 9.0450 -3.6758 -3.5067 22 6 10.4238 -3.7667 -3.3956 23 6 11.0848 -2.9332 -2.5131 24 7 10.4197 -2.0569 -1.7861 25 6 9.1086 -1.9399 -1.8688 26 6 6.2416 -2.8062 -1.4297 27 6 2.2538 -1.0922 0.0005 28 16 1.7192 -2.7187 0.0004 29 1 -0.3635 0.0005 1.0276 30 1 -0.3633 0.8898 -0.5143 31 1 -0.3634 -0.8902 -0.5136 32 1 4.6883 3.9583 0.1935 33 1 4.4911 -2.4765 0.5141 34 1 5.5392 -1.0379 0.5141 35 1 6.2951 -0.0607 -1.3541 36 1 4.8542 0.0116 -2.4132 37 1 5.9099 -1.1673 -4.1383 38 1 7.3988 -0.5533 -3.3597 39 1 8.5017 -4.3167 -4.1852 40 1 10.9742 -4.4826 -3.9881 41 1 12.1586 -3.0000 -2.4180 42 1 8.5982 -1.2103 -1.2576 43 1 5.8654 -3.8248 -1.3334 44 1 6.9637 -2.5926 -0.6416 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000842629815.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:23:49 Heat of formation + Delta-G solvation = 106.772944 kcal Electronic energy + Delta-G solvation = -27586.447744 eV Core-core repulsion = 23858.754992 eV Total energy + Delta-G solvation = -3727.692752 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 345.132 amu Computer time = 0.67 seconds Orbital eigenvalues (eV) -42.63910 -41.46798 -39.71136 -36.50645 -35.70687 -34.42143 -33.09876 -32.41279 -31.22399 -29.60953 -28.76918 -28.26757 -26.09194 -24.66084 -24.07090 -23.49865 -22.69218 -22.16004 -21.19705 -19.44823 -18.54900 -18.05884 -17.65102 -17.43179 -17.38365 -16.72515 -16.56368 -16.30270 -16.07291 -15.57415 -15.16969 -15.11828 -14.77095 -14.37988 -14.20684 -13.94314 -13.78689 -13.66160 -13.46652 -13.38872 -13.12627 -12.91413 -12.85429 -12.67998 -12.48983 -12.41029 -12.01876 -11.97751 -11.76633 -11.74618 -11.37903 -10.94103 -10.71393 -10.67741 -10.37870 -9.92308 -9.63710 -8.81728 -8.65083 -8.55717 -6.97473 0.13927 0.35662 0.53564 0.82043 1.26862 1.44074 1.59707 1.64878 1.84940 2.11811 2.40995 2.81819 2.86392 3.07924 3.44745 3.50949 3.56339 3.74534 3.77081 4.00282 4.04253 4.06106 4.11912 4.12766 4.22066 4.27311 4.45663 4.49937 4.52602 4.63171 4.65985 4.70190 4.76192 4.84111 4.89050 4.96860 5.02110 5.06691 5.09647 5.21425 5.27333 5.37876 5.57104 5.67157 5.79140 5.90556 6.06222 6.47783 6.56336 7.03030 7.32021 8.22841 Molecular weight = 345.13amu Principal moments of inertia in cm(-1) A = 0.011973 B = 0.003134 C = 0.002594 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2338.002398 B = 8931.166767 C =10789.598370 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.095 3.905 2 N -0.518 5.518 3 C 0.353 3.647 4 C -0.451 4.451 5 H 0.118 0.882 6 C 0.037 3.963 7 N -0.774 5.774 8 Si 1.005 2.995 9 H -0.265 1.265 10 H -0.272 1.272 11 H -0.246 1.246 12 N -0.369 5.369 13 N -0.374 5.374 14 C 0.316 3.684 15 N -0.527 5.527 16 C 0.052 3.948 17 C -0.104 4.104 18 C -0.033 4.033 19 H 0.109 0.891 20 C -0.125 4.125 21 C -0.071 4.071 22 C -0.162 4.162 23 C 0.078 3.922 24 N -0.515 5.515 25 C 0.086 3.914 26 C 0.050 3.950 27 C 0.467 3.533 28 S -0.737 6.737 29 H 0.082 0.918 30 H 0.106 0.894 31 H 0.088 0.912 32 H 0.291 0.709 33 H 0.110 0.890 34 H 0.068 0.932 35 H 0.036 0.964 36 H 0.044 0.956 37 H 0.078 0.922 38 H 0.077 0.923 39 H 0.161 0.839 40 H 0.168 0.832 41 H 0.177 0.823 42 H 0.138 0.862 43 H 0.096 0.904 44 H 0.053 0.947 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.788 -4.361 -7.107 12.858 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.046 4.046 2 N -0.219 5.219 3 C 0.105 3.895 4 C -0.492 4.492 5 H 0.136 0.864 6 C -0.186 4.186 7 N -0.398 5.398 8 Si 0.824 3.176 9 H -0.190 1.190 10 H -0.196 1.196 11 H -0.168 1.168 12 N -0.202 5.202 13 N -0.160 5.160 14 C 0.105 3.895 15 N -0.252 5.252 16 C -0.076 4.076 17 C -0.142 4.142 18 C -0.053 4.053 19 H 0.127 0.873 20 C -0.127 4.127 21 C -0.097 4.097 22 C -0.182 4.182 23 C -0.078 4.078 24 N -0.224 5.224 25 C -0.070 4.070 26 C -0.077 4.077 27 C 0.096 3.904 28 S -0.614 6.614 29 H 0.100 0.900 30 H 0.124 0.876 31 H 0.107 0.893 32 H 0.102 0.898 33 H 0.128 0.872 34 H 0.086 0.914 35 H 0.055 0.945 36 H 0.062 0.938 37 H 0.097 0.903 38 H 0.095 0.905 39 H 0.178 0.822 40 H 0.186 0.814 41 H 0.194 0.806 42 H 0.155 0.845 43 H 0.114 0.886 44 H 0.071 0.929 Dipole moment (debyes) X Y Z Total from point charges 10.749 -4.644 -6.762 13.522 hybrid contribution -0.526 1.200 0.278 1.339 sum 10.223 -3.444 -6.484 12.586 Atomic orbital electron populations 1.22028 0.73108 1.05164 1.04301 1.46257 1.09677 1.04121 1.61815 1.21690 0.84413 0.89422 0.93989 1.18897 0.97254 0.85372 1.47676 0.86410 1.26857 0.94072 1.05978 0.91728 1.69968 1.03167 1.36860 1.29844 0.84822 0.79750 0.73734 0.79327 1.18951 1.19635 1.16844 1.79284 1.15063 0.83166 1.42660 1.49355 1.03963 1.06805 1.55846 1.21927 0.83413 0.92628 0.91551 1.65368 1.35370 1.10062 1.14443 1.22863 0.96733 0.91803 0.96191 1.22343 0.99195 0.95085 0.97543 1.20714 0.89751 0.97880 0.96920 0.87311 1.20765 0.95927 0.97782 0.98219 1.21894 0.94955 0.95894 0.96967 1.22506 0.94992 1.00839 0.99829 1.23288 1.01606 0.91022 0.91913 1.67682 1.09594 1.21156 1.23983 1.22546 0.89832 0.97861 0.96748 1.23230 0.90471 0.97072 0.96918 1.22838 0.85370 0.92291 0.89860 1.92611 1.85298 1.00522 1.82924 0.89966 0.87553 0.89341 0.89830 0.87238 0.91380 0.94519 0.93758 0.90314 0.90465 0.82159 0.81403 0.80609 0.84450 0.88554 0.92885 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.10 3.35 10.66 127.77 1.36 4.71 16 2 N -0.52 -23.67 3.17 -548.30 -1.74 -25.40 16 3 C 0.35 17.39 7.50 133.52 1.00 18.39 16 4 C -0.45 -20.46 8.99 23.16 0.21 -20.25 16 5 H 0.12 4.68 7.08 -2.91 -0.02 4.66 16 6 C 0.04 1.61 5.49 85.28 0.47 2.08 16 7 N -0.77 -36.91 11.93 21.84 0.26 -36.65 16 8 Si 1.00 32.47 29.56 68.60 2.03 34.50 16 9 H -0.26 -8.45 7.11 99.48 0.71 -7.74 16 10 H -0.27 -8.65 7.11 99.48 0.71 -7.94 16 11 H -0.25 -7.36 7.11 99.48 0.71 -6.65 16 12 N -0.37 -18.88 10.77 -55.16 -0.59 -19.48 16 13 N -0.37 -17.69 3.58 -359.73 -1.29 -18.98 16 14 C 0.32 12.51 5.79 170.81 0.99 13.50 16 15 N -0.53 -18.46 5.54 -893.03 -4.94 -23.41 16 16 C 0.05 1.81 6.23 86.45 0.54 2.35 16 17 C -0.10 -2.66 6.43 31.49 0.20 -2.46 16 18 C -0.03 -0.72 3.30 -10.65 -0.04 -0.75 16 19 H 0.11 2.05 7.98 -2.39 -0.02 2.03 16 20 C -0.12 -2.52 4.75 -19.77 -0.09 -2.61 16 21 C -0.07 -1.09 9.82 22.47 0.22 -0.87 16 22 C -0.16 -2.18 10.11 22.36 0.23 -1.96 16 23 C 0.08 1.37 11.18 84.69 0.95 2.32 16 24 N -0.52 -12.64 10.36 -195.83 -2.03 -14.67 16 25 C 0.09 2.09 9.31 84.67 0.79 2.87 16 26 C 0.05 1.32 5.95 86.39 0.51 1.84 16 27 C 0.47 22.76 7.84 179.06 1.40 24.16 16 28 S -0.74 -37.00 29.49 -56.49 -1.67 -38.67 16 29 H 0.08 2.62 8.14 -2.39 -0.02 2.60 16 30 H 0.11 3.19 7.27 -2.38 -0.02 3.17 16 31 H 0.09 3.13 7.61 -2.38 -0.02 3.11 16 32 H 0.29 12.60 8.29 -92.71 -0.77 11.83 16 33 H 0.11 4.30 7.64 -2.39 -0.02 4.28 16 34 H 0.07 2.60 7.88 -2.39 -0.02 2.58 16 35 H 0.04 1.35 7.82 -2.39 -0.02 1.33 16 36 H 0.04 1.89 8.14 -2.38 -0.02 1.87 16 37 H 0.08 1.96 8.14 -2.39 -0.02 1.95 16 38 H 0.08 1.88 7.34 -2.38 -0.02 1.86 16 39 H 0.16 1.60 8.02 -2.91 -0.02 1.57 16 40 H 0.17 1.07 8.06 -2.91 -0.02 1.05 16 41 H 0.18 2.05 8.06 -2.91 -0.02 2.03 16 42 H 0.14 3.54 7.75 -2.91 -0.02 3.52 16 43 H 0.10 2.41 8.14 -2.38 -0.02 2.39 16 44 H 0.05 1.34 6.77 -2.39 -0.02 1.33 16 Total: -1.00 -68.42 379.21 -0.21 -68.64 By element: Atomic # 1 Polarization: 29.79 SS G_CDS: 1.02 Total: 30.81 kcal Atomic # 6 Polarization: 34.58 SS G_CDS: 8.74 Total: 43.32 kcal Atomic # 7 Polarization: -128.26 SS G_CDS: -10.33 Total: -138.59 kcal Atomic # 14 Polarization: 32.47 SS G_CDS: 2.03 Total: 34.50 kcal Atomic # 16 Polarization: -37.00 SS G_CDS: -1.67 Total: -38.67 kcal Total: -68.42 -0.21 -68.64 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000842629815.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 175.411 kcal (2) G-P(sol) polarization free energy of solvation -68.423 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 106.987 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.214 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.638 kcal (6) G-S(sol) free energy of system = (1) + (5) 106.773 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.67 seconds