Wall clock time and date at job start Wed Apr 1 2020 03:45:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45200 * 1 3 3 C 1.34237 * 116.99626 * 2 1 4 4 O 1.20825 * 120.00050 * 0.02562 * 3 2 1 5 5 C 1.50697 * 119.99827 * 180.27359 * 3 2 1 6 6 C 1.54890 * 129.09005 * 299.66671 * 5 3 2 7 7 C 1.57173 * 77.91566 * 180.16469 * 6 5 3 8 8 C 1.50696 * 129.25181 * 179.19856 * 7 6 5 9 9 O 1.21276 * 120.00232 * 241.28536 * 8 7 6 10 10 N 1.34781 * 120.00212 * 61.28149 * 8 7 6 11 11 C 1.46503 * 120.00145 * 180.02562 * 10 8 7 12 12 C 1.50703 * 109.47027 * 180.02562 * 11 10 8 13 13 C 1.38301 * 119.92604 * 269.72796 * 12 11 10 14 14 C 1.38109 * 120.06527 * 179.72896 * 13 12 11 15 15 C 1.38877 * 119.92644 * 0.56604 * 14 13 12 16 16 O 1.35752 * 120.06938 * 179.68859 * 15 14 13 17 17 C 1.34832 * 117.00249 * 174.49001 * 16 15 14 18 18 H 1.07997 * 119.99858 * 5.04754 * 17 16 15 19 19 C 1.38655 * 119.99643 * 185.05832 * 17 16 15 20 20 N 1.31557 * 120.00365 * 359.97438 * 19 17 16 21 21 Si 1.86802 * 119.99415 * 179.97438 * 19 17 16 22 22 H 1.48492 * 109.47390 * 59.99398 * 21 19 17 23 23 H 1.48506 * 109.46822 * 179.97438 * 21 19 17 24 24 H 1.48504 * 109.47132 * 299.98952 * 21 19 17 25 25 C 1.38886 * 119.86410 * 359.70188 * 15 14 13 26 26 C 1.38098 * 119.93025 * 0.02562 * 25 15 14 27 27 C 1.54409 * 83.72845 * 42.47487 * 7 6 5 28 28 C 1.54890 * 129.08876 * 59.78737 * 5 3 2 29 29 H 1.09003 * 109.46795 * 179.97438 * 1 2 3 30 30 H 1.08999 * 109.47316 * 299.99515 * 1 2 3 31 31 H 1.08995 * 109.47063 * 59.99854 * 1 2 3 32 32 H 1.09000 * 114.97848 * 291.95970 * 6 5 3 33 33 H 1.09004 * 114.97880 * 67.13492 * 6 5 3 34 34 H 0.97002 * 119.99551 * 0.02562 * 10 8 7 35 35 H 1.08991 * 109.46916 * 299.99937 * 11 10 8 36 36 H 1.08997 * 109.46905 * 60.00023 * 11 10 8 37 37 H 1.07995 * 119.97324 * 359.97438 * 13 12 11 38 38 H 1.07990 * 120.03669 * 180.27444 * 14 13 12 39 39 H 0.96994 * 119.99864 * 180.02562 * 20 19 17 40 40 H 1.07998 * 120.03241 * 179.97438 * 25 15 14 41 41 H 1.08001 * 119.96640 * 179.97438 * 26 25 15 42 42 H 1.08999 * 114.93059 * 205.06269 * 27 7 6 43 43 H 1.08997 * 114.98809 * 70.03698 * 27 7 6 44 44 H 1.08997 * 114.98498 * 292.87126 * 28 5 3 45 45 H 1.09006 * 114.97418 * 68.04472 * 28 5 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4520 0.0000 0.0000 3 6 2.0613 1.1961 0.0000 4 8 1.4032 2.2094 0.0005 5 6 3.5662 1.2750 -0.0062 6 6 4.5771 0.7297 1.0329 7 6 5.5247 1.3927 -0.0315 8 6 7.0282 1.4943 -0.0377 9 8 7.5625 2.5829 -0.0275 10 7 7.7793 0.3752 -0.0544 11 6 9.2409 0.4740 -0.0599 12 6 9.8378 -0.9097 -0.0798 13 6 10.1218 -1.5557 1.1096 14 6 10.6636 -2.8260 1.0948 15 6 10.9342 -3.4498 -0.1161 16 8 11.4726 -4.6958 -0.1341 17 6 11.6041 -5.2886 -1.3379 18 1 11.3635 -4.7424 -2.2380 19 6 12.0481 -6.5996 -1.4203 20 7 12.3415 -7.2649 -0.3239 21 14 12.2296 -7.4210 -3.0882 22 1 13.2032 -6.6600 -3.9115 23 1 12.7174 -8.8116 -2.9045 24 1 10.9127 -7.4446 -3.7743 25 6 10.6530 -2.7960 -1.3088 26 6 10.1060 -1.5282 -1.2873 27 6 4.4741 2.5241 -0.0130 28 6 4.5688 0.7243 -1.0506 29 1 -0.3633 -1.0277 -0.0005 30 1 -0.3634 0.5137 0.8900 31 1 -0.3633 0.5138 -0.8899 32 1 4.5583 1.2312 2.0005 33 1 4.6267 -0.3571 1.1005 34 1 7.3519 -0.4956 -0.0629 35 1 9.5647 1.0217 -0.9448 36 1 9.5728 1.0004 0.8349 37 1 9.9160 -1.0681 2.0510 38 1 10.8811 -3.3318 2.0238 39 1 12.6524 -8.1818 -0.3816 40 1 10.8627 -3.2784 -2.2521 41 1 9.8875 -1.0191 -2.2144 42 1 4.4264 3.1217 -0.9233 43 1 4.4497 3.1149 0.9026 44 1 4.6178 -0.3628 -1.1131 45 1 4.5421 1.2209 -2.0206 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000843786986.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:45:57 Heat of formation + Delta-G solvation = -20.550693 kcal Electronic energy + Delta-G solvation = -28390.336383 eV Core-core repulsion = 24149.784090 eV Total energy + Delta-G solvation = -4240.552292 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 345.145 amu Computer time = 0.74 seconds Orbital eigenvalues (eV) -42.70398 -40.44056 -39.43074 -38.82299 -36.89187 -36.84707 -34.49467 -32.41023 -30.36094 -30.15203 -28.88093 -26.89968 -26.32871 -26.19666 -25.72354 -24.76059 -22.86162 -22.09962 -20.69430 -20.43040 -19.10559 -18.11751 -17.97743 -17.55847 -17.06791 -16.77659 -16.17343 -15.76384 -15.38099 -14.84719 -14.72545 -14.67699 -14.53609 -14.41698 -14.01317 -13.76958 -13.71969 -13.49335 -13.15052 -12.85986 -12.81857 -12.58937 -12.23122 -12.02369 -11.84837 -11.70549 -11.68217 -11.43867 -11.25747 -11.13516 -10.97314 -10.86194 -10.82296 -10.76375 -10.73890 -10.53314 -9.96181 -9.47244 -9.07818 -8.94135 -8.33129 -7.37418 -6.56223 -4.15280 1.59535 1.98038 2.08659 2.13112 2.28883 3.05405 3.06891 3.10666 3.18859 3.60651 3.68966 3.84957 3.87547 3.98060 4.06011 4.32291 4.47044 4.67286 4.74931 4.75417 4.98281 5.05632 5.09905 5.12426 5.12805 5.19198 5.28387 5.35861 5.38620 5.46130 5.47298 5.59795 5.61354 5.75199 5.85753 5.88662 6.08029 6.30236 6.38991 6.55461 6.75904 6.91171 7.09408 7.22390 7.29503 7.31162 7.48868 7.67252 7.88174 8.12207 8.88885 9.56546 10.61062 Molecular weight = 345.15amu Principal moments of inertia in cm(-1) A = 0.012831 B = 0.001960 C = 0.001790 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2181.633724 B =14283.464818 C =15634.866998 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.035 3.965 2 O -0.351 6.351 3 C 0.527 3.473 4 O -0.497 6.497 5 C -0.152 4.152 6 C -0.077 4.077 7 C -0.156 4.156 8 C 0.574 3.426 9 O -0.535 6.535 10 N -0.712 5.712 11 C 0.179 3.821 12 C -0.217 4.217 13 C -0.054 4.054 14 C -0.195 4.195 15 C 0.161 3.839 16 O -0.172 6.172 17 C -0.394 4.394 18 H 0.093 0.907 19 C 0.041 3.959 20 N -0.859 5.859 21 Si 0.942 3.058 22 H -0.269 1.269 23 H -0.277 1.277 24 H -0.269 1.269 25 C -0.237 4.237 26 C -0.050 4.050 27 C -0.060 4.060 28 C -0.076 4.076 29 H 0.105 0.895 30 H 0.064 0.936 31 H 0.064 0.936 32 H 0.089 0.911 33 H 0.096 0.904 34 H 0.404 0.596 35 H 0.068 0.932 36 H 0.069 0.931 37 H 0.113 0.887 38 H 0.118 0.882 39 H 0.272 0.728 40 H 0.128 0.872 41 H 0.108 0.892 42 H 0.088 0.912 43 H 0.088 0.912 44 H 0.096 0.904 45 H 0.087 0.913 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -18.494 12.717 0.104 22.444 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.058 4.058 2 O -0.267 6.267 3 C 0.369 3.631 4 O -0.384 6.384 5 C -0.153 4.153 6 C -0.114 4.114 7 C -0.160 4.160 8 C 0.358 3.642 9 O -0.412 6.412 10 N -0.363 5.363 11 C 0.057 3.943 12 C -0.218 4.218 13 C -0.072 4.072 14 C -0.215 4.215 15 C 0.106 3.894 16 O -0.075 6.075 17 C -0.470 4.470 18 H 0.111 0.889 19 C -0.165 4.165 20 N -0.493 5.493 21 Si 0.766 3.234 22 H -0.194 1.194 23 H -0.202 1.202 24 H -0.194 1.194 25 C -0.257 4.257 26 C -0.069 4.069 27 C -0.098 4.098 28 C -0.113 4.113 29 H 0.123 0.877 30 H 0.083 0.917 31 H 0.083 0.917 32 H 0.107 0.893 33 H 0.114 0.886 34 H 0.239 0.761 35 H 0.086 0.914 36 H 0.087 0.913 37 H 0.131 0.869 38 H 0.136 0.864 39 H 0.082 0.918 40 H 0.146 0.854 41 H 0.126 0.874 42 H 0.106 0.894 43 H 0.107 0.893 44 H 0.115 0.885 45 H 0.106 0.894 Dipole moment (debyes) X Y Z Total from point charges -18.128 13.384 0.357 22.536 hybrid contribution -0.393 -0.850 -0.891 1.292 sum -18.521 12.535 -0.534 22.370 Atomic orbital electron populations 1.23347 0.75662 1.04106 1.02734 1.86504 1.23725 1.32696 1.83754 1.21384 0.88248 0.81404 0.72057 1.90691 1.66297 1.36547 1.44833 1.23276 0.87193 1.02321 1.02540 1.24540 0.89406 1.01443 0.96049 1.24205 0.91696 1.00060 1.00009 1.18390 0.85062 0.84383 0.76339 1.90723 1.73232 1.27489 1.49797 1.46262 1.07574 1.08578 1.73854 1.20034 0.77666 0.94552 1.02033 1.19173 1.11976 0.96936 0.93731 1.20534 0.96568 0.93478 0.96655 1.20219 1.08665 0.96399 0.96195 1.19448 0.90189 0.86440 0.93337 1.83979 1.67371 1.23183 1.32930 1.21309 1.46753 0.96121 0.82825 0.88945 1.25324 0.96264 0.95384 0.99481 1.70022 1.40491 1.11157 1.27592 0.85762 0.79138 0.78456 0.79996 1.19413 1.20198 1.19411 1.21159 1.09167 0.96724 0.98601 1.20641 0.95897 0.93979 0.96349 1.23671 0.88471 0.93665 1.03953 1.24071 0.89485 1.01449 0.96315 0.87678 0.91679 0.91686 0.89288 0.88585 0.76149 0.91356 0.91304 0.86928 0.86364 0.91786 0.85412 0.87368 0.89392 0.89316 0.88541 0.89432 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 0.20 10.56 101.05 1.07 1.27 16 2 O -0.35 -3.01 10.57 -39.28 -0.41 -3.43 16 3 C 0.53 5.18 8.07 36.00 0.29 5.47 16 4 O -0.50 -6.12 16.84 -18.75 -0.32 -6.43 16 5 C -0.15 -1.28 3.47 -172.26 -0.60 -1.88 16 6 C -0.08 -0.57 7.95 -24.72 -0.20 -0.77 16 7 C -0.16 -1.42 3.50 -170.99 -0.60 -2.02 16 8 C 0.57 6.90 7.94 -10.99 -0.09 6.81 16 9 O -0.54 -8.44 17.10 5.56 0.10 -8.35 16 10 N -0.71 -8.00 5.55 -61.47 -0.34 -8.34 16 11 C 0.18 2.30 5.80 -5.19 -0.03 2.27 16 12 C -0.22 -3.25 5.25 -104.58 -0.55 -3.79 16 13 C -0.05 -0.85 9.69 -39.61 -0.38 -1.23 16 14 C -0.20 -3.78 9.99 -39.39 -0.39 -4.18 16 15 C 0.16 3.61 6.65 -39.11 -0.26 3.35 16 16 O -0.17 -4.67 9.76 0.04 0.00 -4.67 16 17 C -0.39 -10.48 9.49 30.89 0.29 -10.19 16 18 H 0.09 2.25 5.20 -52.49 -0.27 1.98 16 19 C 0.04 1.07 5.49 -17.52 -0.10 0.97 16 20 N -0.86 -24.25 13.67 55.48 0.76 -23.49 16 21 Si 0.94 19.63 29.55 -169.99 -5.02 14.61 16 22 H -0.27 -5.44 7.11 56.52 0.40 -5.04 16 23 H -0.28 -5.67 7.11 56.52 0.40 -5.26 16 24 H -0.27 -5.42 7.11 56.52 0.40 -5.02 16 25 C -0.24 -4.72 9.17 -39.39 -0.36 -5.08 16 26 C -0.05 -0.82 9.69 -39.61 -0.38 -1.20 16 27 C -0.06 -0.54 7.77 -26.71 -0.21 -0.75 16 28 C -0.08 -0.57 7.84 -25.98 -0.20 -0.77 16 29 H 0.10 0.33 8.14 -51.93 -0.42 -0.09 16 30 H 0.06 0.36 8.13 -51.93 -0.42 -0.06 16 31 H 0.06 0.36 8.13 -51.93 -0.42 -0.06 16 32 H 0.09 0.62 7.91 -51.93 -0.41 0.21 16 33 H 0.10 0.60 7.97 -51.93 -0.41 0.19 16 34 H 0.40 3.96 8.46 -40.82 -0.35 3.61 16 35 H 0.07 0.90 8.08 -51.93 -0.42 0.48 16 36 H 0.07 0.89 8.08 -51.93 -0.42 0.47 16 37 H 0.11 1.50 8.06 -52.49 -0.42 1.08 16 38 H 0.12 2.23 8.06 -52.49 -0.42 1.80 16 39 H 0.27 7.06 8.31 -40.82 -0.34 6.72 16 40 H 0.13 2.57 5.64 -52.49 -0.30 2.27 16 41 H 0.11 1.52 8.06 -52.49 -0.42 1.10 16 42 H 0.09 0.78 7.94 -51.93 -0.41 0.37 16 43 H 0.09 0.78 7.91 -51.93 -0.41 0.37 16 44 H 0.10 0.61 7.97 -51.93 -0.41 0.20 16 45 H 0.09 0.63 7.93 -51.93 -0.41 0.22 16 LS Contribution 392.66 15.07 5.92 5.92 Total: -1.00 -32.45 392.66 -7.92 -40.37 By element: Atomic # 1 Polarization: 11.43 SS G_CDS: -5.90 Total: 5.53 kcal Atomic # 6 Polarization: -9.02 SS G_CDS: -2.70 Total: -11.72 kcal Atomic # 7 Polarization: -32.25 SS G_CDS: 0.42 Total: -31.83 kcal Atomic # 8 Polarization: -22.24 SS G_CDS: -0.64 Total: -22.87 kcal Atomic # 14 Polarization: 19.63 SS G_CDS: -5.02 Total: 14.61 kcal Total LS contribution 5.92 Total: 5.92 kcal Total: -32.45 -7.92 -40.37 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000843786986.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 19.819 kcal (2) G-P(sol) polarization free energy of solvation -32.449 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -12.630 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.920 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.369 kcal (6) G-S(sol) free energy of system = (1) + (5) -20.551 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.74 seconds