Wall clock time and date at job start Wed Apr 1 2020 03:45:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45200 * 1 3 3 C 1.34237 * 116.99626 * 2 1 4 4 O 1.20825 * 120.00050 * 0.02562 * 3 2 1 5 5 C 1.50697 * 119.99827 * 180.27359 * 3 2 1 6 6 C 1.54890 * 129.09005 * 299.66671 * 5 3 2 7 7 C 1.57173 * 77.91566 * 180.16469 * 6 5 3 8 8 C 1.50696 * 129.25181 * 179.19856 * 7 6 5 9 9 O 1.21276 * 120.00232 * 241.28536 * 8 7 6 10 10 N 1.34781 * 120.00212 * 61.28149 * 8 7 6 11 11 C 1.46503 * 120.00145 * 180.02562 * 10 8 7 12 12 C 1.50703 * 109.47027 * 180.02562 * 11 10 8 13 13 C 1.38301 * 119.92604 * 269.72796 * 12 11 10 14 14 C 1.38109 * 120.06527 * 179.72896 * 13 12 11 15 15 C 1.38877 * 119.92644 * 0.56604 * 14 13 12 16 16 O 1.35752 * 120.06938 * 179.68859 * 15 14 13 17 17 C 1.34832 * 117.00249 * 174.49001 * 16 15 14 18 18 H 1.07997 * 119.99858 * 5.04754 * 17 16 15 19 19 C 1.38655 * 119.99643 * 185.05832 * 17 16 15 20 20 N 1.31557 * 120.00365 * 359.97438 * 19 17 16 21 21 Si 1.86802 * 119.99415 * 179.97438 * 19 17 16 22 22 H 1.48492 * 109.47390 * 59.99398 * 21 19 17 23 23 H 1.48506 * 109.46822 * 179.97438 * 21 19 17 24 24 H 1.48504 * 109.47132 * 299.98952 * 21 19 17 25 25 C 1.38886 * 119.86410 * 359.70188 * 15 14 13 26 26 C 1.38098 * 119.93025 * 0.02562 * 25 15 14 27 27 C 1.54409 * 83.72845 * 42.47487 * 7 6 5 28 28 C 1.54890 * 129.08876 * 59.78737 * 5 3 2 29 29 H 1.09003 * 109.46795 * 179.97438 * 1 2 3 30 30 H 1.08999 * 109.47316 * 299.99515 * 1 2 3 31 31 H 1.08995 * 109.47063 * 59.99854 * 1 2 3 32 32 H 1.09000 * 114.97848 * 291.95970 * 6 5 3 33 33 H 1.09004 * 114.97880 * 67.13492 * 6 5 3 34 34 H 0.97002 * 119.99551 * 0.02562 * 10 8 7 35 35 H 1.08991 * 109.46916 * 299.99937 * 11 10 8 36 36 H 1.08997 * 109.46905 * 60.00023 * 11 10 8 37 37 H 1.07995 * 119.97324 * 359.97438 * 13 12 11 38 38 H 1.07990 * 120.03669 * 180.27444 * 14 13 12 39 39 H 0.96994 * 119.99864 * 180.02562 * 20 19 17 40 40 H 1.07998 * 120.03241 * 179.97438 * 25 15 14 41 41 H 1.08001 * 119.96640 * 179.97438 * 26 25 15 42 42 H 1.08999 * 114.93059 * 205.06269 * 27 7 6 43 43 H 1.08997 * 114.98809 * 70.03698 * 27 7 6 44 44 H 1.08997 * 114.98498 * 292.87126 * 28 5 3 45 45 H 1.09006 * 114.97418 * 68.04472 * 28 5 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4520 0.0000 0.0000 3 6 2.0613 1.1961 0.0000 4 8 1.4032 2.2094 0.0005 5 6 3.5662 1.2750 -0.0062 6 6 4.5771 0.7297 1.0329 7 6 5.5247 1.3927 -0.0315 8 6 7.0282 1.4943 -0.0377 9 8 7.5625 2.5829 -0.0275 10 7 7.7793 0.3752 -0.0544 11 6 9.2409 0.4740 -0.0599 12 6 9.8378 -0.9097 -0.0798 13 6 10.1218 -1.5557 1.1096 14 6 10.6636 -2.8260 1.0948 15 6 10.9342 -3.4498 -0.1161 16 8 11.4726 -4.6958 -0.1341 17 6 11.6041 -5.2886 -1.3379 18 1 11.3635 -4.7424 -2.2380 19 6 12.0481 -6.5996 -1.4203 20 7 12.3415 -7.2649 -0.3239 21 14 12.2296 -7.4210 -3.0882 22 1 13.2032 -6.6600 -3.9115 23 1 12.7174 -8.8116 -2.9045 24 1 10.9127 -7.4446 -3.7743 25 6 10.6530 -2.7960 -1.3088 26 6 10.1060 -1.5282 -1.2873 27 6 4.4741 2.5241 -0.0130 28 6 4.5688 0.7243 -1.0506 29 1 -0.3633 -1.0277 -0.0005 30 1 -0.3634 0.5137 0.8900 31 1 -0.3633 0.5138 -0.8899 32 1 4.5583 1.2312 2.0005 33 1 4.6267 -0.3571 1.1005 34 1 7.3519 -0.4956 -0.0629 35 1 9.5647 1.0217 -0.9448 36 1 9.5728 1.0004 0.8349 37 1 9.9160 -1.0681 2.0510 38 1 10.8811 -3.3318 2.0238 39 1 12.6524 -8.1818 -0.3816 40 1 10.8627 -3.2784 -2.2521 41 1 9.8875 -1.0191 -2.2144 42 1 4.4264 3.1217 -0.9233 43 1 4.4497 3.1149 0.9026 44 1 4.6178 -0.3628 -1.1131 45 1 4.5421 1.2209 -2.0206 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000843786986.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:45:56 Heat of formation + Delta-G solvation = -40.413235 kcal Electronic energy + Delta-G solvation = -28391.197687 eV Core-core repulsion = 24149.784090 eV Total energy + Delta-G solvation = -4241.413597 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 345.145 amu Computer time = 0.71 seconds Orbital eigenvalues (eV) -43.37963 -41.18507 -40.85667 -39.99931 -38.42738 -37.58168 -35.66657 -34.25753 -31.82526 -31.51255 -29.49055 -28.00358 -27.23185 -26.91049 -26.83570 -25.92669 -23.77427 -23.61798 -22.10185 -21.25565 -19.98667 -19.79641 -18.85086 -18.61235 -18.26496 -17.44623 -17.15133 -16.76713 -16.59913 -16.27084 -15.98401 -15.68409 -15.51519 -15.37194 -15.30439 -15.12421 -14.80537 -14.40554 -14.36078 -14.19102 -13.94263 -13.65934 -13.31251 -13.16222 -13.01119 -12.70243 -12.54943 -12.48209 -12.35870 -12.27506 -12.20704 -12.13429 -11.92282 -11.86806 -11.45594 -11.40178 -11.17999 -10.96338 -10.75703 -10.09289 -9.77984 -8.98762 -8.46448 -6.14562 0.56332 0.60876 0.87268 1.37397 1.39791 1.46250 1.49224 1.52994 2.18057 2.20508 2.86178 2.95861 2.99794 3.18912 3.21305 3.31294 3.38279 3.51201 3.67681 3.87582 4.02686 4.06163 4.20476 4.28355 4.32060 4.48215 4.49932 4.52952 4.59725 4.66221 4.72225 4.78598 4.81082 4.83029 4.83976 4.87145 4.94270 5.07139 5.16466 5.23624 5.29609 5.39786 5.55447 5.71955 5.77599 6.03415 6.18980 6.56043 6.59709 6.98424 7.19636 7.78022 8.76042 Molecular weight = 345.15amu Principal moments of inertia in cm(-1) A = 0.012831 B = 0.001960 C = 0.001790 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2181.633724 B =14283.464818 C =15634.866998 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.027 3.973 2 O -0.353 6.353 3 C 0.529 3.471 4 O -0.529 6.529 5 C -0.155 4.155 6 C -0.063 4.063 7 C -0.164 4.164 8 C 0.579 3.421 9 O -0.575 6.575 10 N -0.703 5.703 11 C 0.183 3.817 12 C -0.182 4.182 13 C -0.042 4.042 14 C -0.205 4.205 15 C 0.122 3.878 16 O -0.229 6.229 17 C -0.413 4.413 18 H 0.104 0.896 19 C -0.022 4.022 20 N -0.919 5.919 21 Si 1.017 2.983 22 H -0.258 1.258 23 H -0.274 1.274 24 H -0.256 1.256 25 C -0.244 4.244 26 C -0.045 4.045 27 C -0.068 4.068 28 C -0.063 4.063 29 H 0.133 0.867 30 H 0.065 0.935 31 H 0.064 0.936 32 H 0.093 0.907 33 H 0.115 0.885 34 H 0.414 0.586 35 H 0.073 0.927 36 H 0.076 0.924 37 H 0.149 0.851 38 H 0.114 0.886 39 H 0.273 0.727 40 H 0.120 0.880 41 H 0.140 0.860 42 H 0.084 0.916 43 H 0.085 0.915 44 H 0.115 0.885 45 H 0.090 0.910 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -20.246 14.082 -0.806 24.675 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.066 4.066 2 O -0.269 6.269 3 C 0.373 3.627 4 O -0.419 6.419 5 C -0.157 4.157 6 C -0.101 4.101 7 C -0.167 4.167 8 C 0.365 3.635 9 O -0.455 6.455 10 N -0.354 5.354 11 C 0.061 3.939 12 C -0.183 4.183 13 C -0.061 4.061 14 C -0.224 4.224 15 C 0.071 3.929 16 O -0.136 6.136 17 C -0.489 4.489 18 H 0.121 0.879 19 C -0.220 4.220 20 N -0.557 5.557 21 Si 0.836 3.164 22 H -0.183 1.183 23 H -0.199 1.199 24 H -0.180 1.180 25 C -0.263 4.263 26 C -0.063 4.063 27 C -0.106 4.106 28 C -0.101 4.101 29 H 0.151 0.849 30 H 0.083 0.917 31 H 0.083 0.917 32 H 0.111 0.889 33 H 0.133 0.867 34 H 0.251 0.749 35 H 0.092 0.908 36 H 0.094 0.906 37 H 0.166 0.834 38 H 0.132 0.868 39 H 0.082 0.918 40 H 0.138 0.862 41 H 0.158 0.842 42 H 0.102 0.898 43 H 0.104 0.896 44 H 0.134 0.866 45 H 0.109 0.891 Dipole moment (debyes) X Y Z Total from point charges -19.918 14.779 -0.553 24.808 hybrid contribution -0.045 -0.883 -0.499 1.015 sum -19.963 13.896 -1.051 24.346 Atomic orbital electron populations 1.23631 0.74174 1.05999 1.02780 1.86495 1.25243 1.31906 1.83248 1.21587 0.88690 0.81296 0.71124 1.90678 1.67083 1.37593 1.46522 1.23177 0.86653 1.02048 1.03783 1.24565 0.87467 1.02479 0.95543 1.23986 0.89999 1.00700 1.02019 1.18660 0.86060 0.83629 0.75139 1.90714 1.74203 1.28931 1.51620 1.46043 1.06795 1.09080 1.73493 1.19947 0.78560 0.92570 1.02841 1.19462 1.08702 0.97249 0.92863 1.20892 0.94622 0.91880 0.98677 1.20455 1.09025 0.97762 0.95206 1.20015 0.91595 0.85820 0.95449 1.83949 1.70731 1.25534 1.33347 1.21782 1.46868 0.96781 0.83429 0.87866 1.26572 0.95858 0.95854 1.03723 1.70170 1.43552 1.11656 1.30284 0.84669 0.79720 0.77169 0.74835 1.18276 1.19878 1.18007 1.21248 1.09592 0.98074 0.97434 1.20949 0.94468 0.92519 0.98360 1.23756 0.88975 0.94131 1.03748 1.24095 0.87671 1.02459 0.95826 0.84883 0.91670 0.91702 0.88883 0.86657 0.74940 0.90834 0.90559 0.83381 0.86779 0.91840 0.86241 0.84200 0.89781 0.89620 0.86637 0.89148 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.26 10.56 113.37 1.20 1.46 16 2 O -0.35 -5.32 10.57 -51.49 -0.54 -5.86 16 3 C 0.53 9.56 8.07 71.23 0.57 10.14 16 4 O -0.53 -12.66 16.84 21.97 0.37 -12.29 16 5 C -0.16 -2.26 3.47 -63.68 -0.22 -2.49 16 6 C -0.06 -0.74 7.95 31.90 0.25 -0.49 16 7 C -0.16 -2.52 3.50 -62.86 -0.22 -2.74 16 8 C 0.58 12.17 7.94 87.66 0.70 12.86 16 9 O -0.57 -16.85 17.10 -3.02 -0.05 -16.90 16 10 N -0.70 -12.97 5.55 -466.79 -2.59 -15.56 16 11 C 0.18 3.93 5.80 85.63 0.50 4.42 16 12 C -0.18 -4.75 5.25 -19.83 -0.10 -4.85 16 13 C -0.04 -1.21 9.69 22.25 0.22 -1.00 16 14 C -0.21 -7.86 9.99 22.39 0.22 -7.64 16 15 C 0.12 5.61 6.65 22.58 0.15 5.76 16 16 O -0.23 -13.13 9.76 -22.78 -0.22 -13.36 16 17 C -0.41 -22.92 9.49 67.92 0.64 -22.27 16 18 H 0.10 5.20 5.20 -2.91 -0.02 5.19 16 19 C -0.02 -1.22 5.49 84.83 0.47 -0.75 16 20 N -0.92 -54.73 13.67 21.61 0.30 -54.43 16 21 Si 1.02 41.13 29.55 68.60 2.03 43.15 16 22 H -0.26 -9.84 7.11 99.48 0.71 -9.13 16 23 H -0.27 -10.76 7.11 99.48 0.71 -10.06 16 24 H -0.26 -9.64 7.11 99.48 0.71 -8.93 16 25 C -0.24 -9.59 9.17 22.39 0.21 -9.39 16 26 C -0.04 -1.32 9.69 22.25 0.22 -1.10 16 27 C -0.07 -1.13 7.77 30.60 0.24 -0.89 16 28 C -0.06 -0.75 7.84 31.08 0.24 -0.51 16 29 H 0.13 0.49 8.14 -2.39 -0.02 0.47 16 30 H 0.06 0.63 8.13 -2.39 -0.02 0.61 16 31 H 0.06 0.63 8.13 -2.39 -0.02 0.61 16 32 H 0.09 1.04 7.91 -2.39 -0.02 1.02 16 33 H 0.12 0.94 7.97 -2.38 -0.02 0.92 16 34 H 0.41 6.23 8.46 -92.71 -0.78 5.45 16 35 H 0.07 1.60 8.08 -2.39 -0.02 1.58 16 36 H 0.08 1.63 8.08 -2.39 -0.02 1.61 16 37 H 0.15 3.26 8.06 -2.91 -0.02 3.24 16 38 H 0.11 4.38 8.06 -2.92 -0.02 4.36 16 39 H 0.27 14.93 8.31 -92.71 -0.77 14.16 16 40 H 0.12 4.83 5.64 -2.91 -0.02 4.81 16 41 H 0.14 3.32 8.06 -2.91 -0.02 3.30 16 42 H 0.08 1.42 7.94 -2.39 -0.02 1.40 16 43 H 0.09 1.43 7.91 -2.39 -0.02 1.41 16 44 H 0.12 0.97 7.97 -2.39 -0.02 0.95 16 45 H 0.09 1.05 7.93 -2.38 -0.02 1.03 16 Total: -1.00 -75.53 392.66 4.81 -70.72 By element: Atomic # 1 Polarization: 23.74 SS G_CDS: 0.25 Total: 24.00 kcal Atomic # 6 Polarization: -24.74 SS G_CDS: 5.27 Total: -19.47 kcal Atomic # 7 Polarization: -67.70 SS G_CDS: -2.29 Total: -69.99 kcal Atomic # 8 Polarization: -47.97 SS G_CDS: -0.45 Total: -48.41 kcal Atomic # 14 Polarization: 41.13 SS G_CDS: 2.03 Total: 43.15 kcal Total: -75.53 4.81 -70.72 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000843786986.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 30.309 kcal (2) G-P(sol) polarization free energy of solvation -75.535 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -45.226 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.812 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.722 kcal (6) G-S(sol) free energy of system = (1) + (5) -40.413 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.71 seconds