Wall clock time and date at job start Wed Apr 1 2020 03:06:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 H 1.09002 * 109.46670 * 2 1 4 4 O 1.45197 * 109.47339 * 120.00165 * 2 1 3 5 5 C 1.34712 * 116.99839 * 270.00327 * 4 2 1 6 6 O 1.21468 * 120.00191 * 359.97438 * 5 4 2 7 7 C 1.47749 * 119.99743 * 180.02562 * 5 4 2 8 8 C 1.39728 * 120.08154 * 359.71658 * 7 5 4 9 9 C 1.38030 * 120.13403 * 179.74737 * 8 7 5 10 10 C 1.38118 * 120.30022 * 0.55767 * 9 8 7 11 11 C 1.39621 * 120.16100 * 359.70194 * 10 9 8 12 12 C 1.43202 * 120.06523 * 180.02562 * 11 10 9 13 13 C 8.35108 * 105.65991 * 82.50386 * 2 1 3 14 14 C 9.68906 * 104.82960 * 78.54346 * 2 1 3 15 15 O 1.42896 * 109.47206 * 190.58607 * 14 13 12 16 16 C 1.39291 * 119.86165 * 0.02562 * 11 10 9 17 17 C 1.50702 * 109.47230 * 240.00733 * 2 1 3 18 18 O 1.21283 * 119.99478 * 244.99823 * 17 2 1 19 19 N 1.34773 * 120.00430 * 64.99170 * 17 2 1 20 20 C 1.46506 * 119.99969 * 0.02562 * 19 17 2 21 21 C 1.46499 * 120.00036 * 179.72648 * 19 17 2 22 22 C 1.50703 * 109.47126 * 270.27831 * 21 19 17 23 23 H 1.08002 * 119.99820 * 359.97438 * 22 21 19 24 24 C 1.37876 * 119.99889 * 180.02562 * 22 21 19 25 25 N 1.31520 * 119.99905 * 179.97438 * 24 22 21 26 26 Si 1.86803 * 120.00302 * 359.97438 * 24 22 21 27 27 H 1.48503 * 109.47082 * 89.99861 * 26 24 22 28 28 H 1.48492 * 109.47090 * 210.00394 * 26 24 22 29 29 H 1.48499 * 109.46812 * 330.00449 * 26 24 22 30 30 H 1.09005 * 109.47553 * 60.00228 * 1 2 3 31 31 H 1.09002 * 109.46624 * 179.97438 * 1 2 3 32 32 H 1.08998 * 109.46972 * 299.99294 * 1 2 3 33 33 H 1.07999 * 119.93213 * 0.02881 * 8 7 5 34 34 H 1.07993 * 119.84662 * 180.25941 * 9 8 7 35 35 H 1.08001 * 119.92107 * 179.72054 * 10 9 8 36 36 H 1.09002 * 109.46638 * 310.58804 * 14 13 12 37 37 H 1.09004 * 109.46934 * 70.58335 * 14 13 12 38 38 H 0.96698 * 114.00006 * 179.97438 * 15 14 13 39 39 H 1.08003 * 120.14598 * 180.02562 * 16 11 10 40 40 H 1.08999 * 109.46892 * 269.72362 * 20 19 17 41 41 H 1.09000 * 109.46803 * 29.71536 * 20 19 17 42 42 H 1.09000 * 109.47214 * 149.72329 * 20 19 17 43 43 H 1.08994 * 109.47173 * 30.28203 * 21 19 17 44 44 H 1.09005 * 109.47077 * 150.28374 * 21 19 17 45 45 H 0.96998 * 119.99775 * 179.97438 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 8 2.0140 -0.6845 1.1855 5 6 2.2178 0.0667 2.2850 6 8 1.9977 1.2608 2.2541 7 6 2.7102 -0.5618 3.5282 8 6 2.9594 -1.9362 3.5670 9 6 3.4244 -2.5236 4.7263 10 6 3.6356 -1.7605 5.8580 11 6 3.3855 -0.3871 5.8347 12 6 3.6056 0.4022 7.0091 13 6 3.7842 1.0490 7.9724 14 6 4.0099 1.8604 9.1797 15 8 2.7526 2.2823 9.7120 16 6 2.9215 0.2137 4.6668 17 6 2.0324 -0.7103 -1.2306 18 8 2.6530 -1.7465 -1.1216 19 7 1.7918 -0.1940 -2.4521 20 6 1.0425 1.0580 -2.5836 21 6 2.2854 -0.8814 -3.6479 22 6 3.6681 -0.3821 -3.9797 23 1 4.1325 0.3722 -3.3618 24 6 4.3397 -0.8874 -5.0726 25 7 5.5461 -0.4512 -5.3625 26 14 3.5361 -2.1915 -6.1418 27 1 2.7676 -1.5350 -7.2298 28 1 4.5841 -3.0625 -6.7319 29 1 2.6177 -3.0136 -5.3136 30 1 -0.3634 0.5138 -0.8900 31 1 -0.3633 -1.0277 -0.0005 32 1 -0.3633 0.5137 0.8900 33 1 2.7922 -2.5392 2.6868 34 1 3.6195 -3.5855 4.7499 35 1 3.9952 -2.2273 6.7631 36 1 4.5382 1.2647 9.9241 37 1 4.6078 2.7350 8.9232 38 1 2.8250 2.8223 10.5109 39 1 2.7270 1.2758 4.6435 40 1 -0.0212 0.8370 -2.6727 41 1 1.2123 1.6773 -1.7029 42 1 1.3786 1.5909 -3.4731 43 1 2.3218 -1.9546 -3.4611 44 1 1.6162 -0.6807 -4.4846 45 1 6.0188 -0.8070 -6.1312 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000860079553.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:06:37 Heat of formation + Delta-G solvation = -79.097230 kcal Electronic energy + Delta-G solvation = -28454.961771 eV Core-core repulsion = 24211.870711 eV Total energy + Delta-G solvation = -4243.091060 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 345.145 amu Computer time = 0.67 seconds Orbital eigenvalues (eV) -40.85874 -39.55148 -38.75425 -37.54117 -36.41810 -35.05349 -34.32938 -32.86720 -32.01932 -31.35762 -31.07156 -28.33274 -27.20388 -26.32513 -25.23556 -24.00455 -23.23266 -22.14208 -20.97120 -19.12449 -18.84072 -18.06854 -17.33649 -16.97684 -16.87500 -16.53187 -16.10189 -15.92200 -15.65680 -15.48462 -15.10415 -14.91155 -14.78751 -14.10043 -14.02598 -13.64464 -13.51252 -13.40308 -12.97451 -12.78512 -12.45433 -12.34785 -12.24849 -12.17564 -11.86172 -11.80876 -11.60497 -11.45681 -11.44431 -11.22412 -10.99237 -10.76114 -10.67414 -10.53647 -10.18528 -10.13691 -9.57552 -9.43547 -9.04567 -8.92825 -8.61868 -7.81818 -6.10923 -4.10561 0.29804 0.66663 2.08335 2.12692 2.40290 2.65645 3.15579 3.25310 3.33782 3.37553 3.42794 3.62105 3.74373 4.29468 4.37398 4.41935 4.54059 4.69896 4.70082 4.74173 4.82504 4.86314 4.92327 4.99796 5.03419 5.07595 5.22058 5.39483 5.47935 5.57471 5.60774 5.63286 5.75605 5.90880 5.95099 5.96256 6.00281 6.15316 6.32781 6.41165 6.59168 6.90497 7.00714 7.11570 7.21199 7.56272 7.64060 8.08339 8.42580 8.79657 8.92598 9.48278 11.02337 Molecular weight = 345.15amu Principal moments of inertia in cm(-1) A = 0.018200 B = 0.001930 C = 0.001882 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1538.125063 B =14504.888378 C =14874.812766 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.170 4.170 2 C 0.072 3.928 3 H 0.109 0.891 4 O -0.320 6.320 5 C 0.510 3.490 6 O -0.505 6.505 7 C -0.119 4.119 8 C -0.044 4.044 9 C -0.130 4.130 10 C -0.059 4.059 11 C -0.005 4.005 12 C -0.108 4.108 13 C -0.165 4.165 14 C 0.193 3.807 15 O -0.567 6.567 16 C -0.028 4.028 17 C 0.512 3.488 18 O -0.518 6.518 19 N -0.591 5.591 20 C 0.075 3.925 21 C 0.217 3.783 22 C -0.533 4.533 23 H 0.075 0.925 24 C 0.073 3.927 25 N -0.896 5.896 26 Si 0.875 3.125 27 H -0.275 1.275 28 H -0.283 1.283 29 H -0.263 1.263 30 H 0.089 0.911 31 H 0.072 0.928 32 H 0.070 0.930 33 H 0.150 0.850 34 H 0.140 0.860 35 H 0.134 0.866 36 H 0.075 0.925 37 H 0.076 0.924 38 H 0.388 0.612 39 H 0.143 0.857 40 H 0.052 0.948 41 H 0.062 0.938 42 H 0.081 0.919 43 H 0.043 0.957 44 H 0.030 0.970 45 H 0.265 0.735 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.067 2.132 26.585 27.864 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.228 4.228 2 C 0.013 3.987 3 H 0.127 0.873 4 O -0.235 6.235 5 C 0.354 3.646 6 O -0.394 6.394 7 C -0.121 4.121 8 C -0.062 4.062 9 C -0.148 4.148 10 C -0.077 4.077 11 C -0.005 4.005 12 C -0.108 4.108 13 C -0.165 4.165 14 C 0.117 3.883 15 O -0.374 6.374 16 C -0.046 4.046 17 C 0.297 3.703 18 O -0.393 6.393 19 N -0.324 5.324 20 C -0.069 4.069 21 C 0.097 3.903 22 C -0.571 4.571 23 H 0.093 0.907 24 C -0.130 4.130 25 N -0.534 5.534 26 Si 0.702 3.298 27 H -0.201 1.201 28 H -0.209 1.209 29 H -0.188 1.188 30 H 0.108 0.892 31 H 0.091 0.909 32 H 0.089 0.911 33 H 0.167 0.833 34 H 0.158 0.842 35 H 0.152 0.848 36 H 0.093 0.907 37 H 0.094 0.906 38 H 0.237 0.763 39 H 0.161 0.839 40 H 0.070 0.930 41 H 0.080 0.920 42 H 0.100 0.900 43 H 0.061 0.939 44 H 0.048 0.952 45 H 0.075 0.925 Dipole moment (debyes) X Y Z Total from point charges -7.878 1.560 25.921 27.137 hybrid contribution 0.039 -0.025 -0.298 0.301 sum -7.839 1.535 25.624 26.840 Atomic orbital electron populations 1.22293 0.92187 1.04086 1.04206 1.22625 0.95772 0.97770 0.82508 0.87337 1.86629 1.76629 1.40878 1.19331 1.21108 0.74393 0.85071 0.84005 1.90821 1.48473 1.15783 1.84359 1.18973 1.07021 0.94503 0.91567 1.21800 0.92065 0.93415 0.98939 1.21142 1.00547 1.00872 0.92245 1.21501 0.95365 0.92038 0.98833 1.15656 1.03731 0.91923 0.89239 1.18981 0.98417 0.98943 0.94491 1.21678 1.02000 0.97539 0.95298 1.18718 0.85817 0.95234 0.88550 1.86562 1.29364 1.73892 1.47602 1.21304 0.93043 1.00604 0.89626 1.19742 0.80926 0.85900 0.83763 1.90701 1.39404 1.23486 1.85742 1.47726 1.54206 1.24137 1.06358 1.21890 0.95191 0.86490 1.03310 1.19724 0.95257 0.94044 0.81251 1.21323 0.99118 1.24302 1.12357 0.90725 1.24861 0.94703 0.96225 0.97198 1.69899 1.12168 1.43227 1.28082 0.86852 0.79666 0.82371 0.80898 1.20054 1.20877 1.18787 0.89210 0.90906 0.91114 0.83273 0.84172 0.84829 0.90750 0.90643 0.76334 0.83908 0.92958 0.91983 0.90045 0.93882 0.95248 0.92502 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -2.14 9.27 37.16 0.34 -1.80 16 2 C 0.07 1.18 2.17 -27.88 -0.06 1.12 16 3 H 0.11 1.75 6.15 -51.93 -0.32 1.43 16 4 O -0.32 -5.37 8.66 -47.19 -0.41 -5.78 16 5 C 0.51 7.88 7.87 34.62 0.27 8.16 16 6 O -0.50 -8.49 15.60 -19.24 -0.30 -8.79 16 7 C -0.12 -1.55 5.87 -105.03 -0.62 -2.16 16 8 C -0.04 -0.49 9.61 -39.10 -0.38 -0.86 16 9 C -0.13 -1.13 10.02 -39.70 -0.40 -1.53 16 10 C -0.06 -0.53 9.74 -39.11 -0.38 -0.91 16 11 C -0.01 -0.06 5.72 -107.06 -0.61 -0.67 16 12 C -0.11 -1.21 13.23 -38.84 -0.51 -1.72 16 13 C -0.17 -1.66 13.73 -37.12 -0.51 -2.17 16 14 C 0.19 1.16 7.52 34.37 0.26 1.42 16 15 O -0.57 -3.92 13.62 -35.23 -0.48 -4.40 16 16 C -0.03 -0.33 9.29 -38.77 -0.36 -0.69 16 17 C 0.51 10.70 7.10 -10.99 -0.08 10.62 16 18 O -0.52 -13.01 16.09 -14.05 -0.23 -13.24 16 19 N -0.59 -12.08 2.86 -182.95 -0.52 -12.60 16 20 C 0.07 1.12 8.92 59.85 0.53 1.65 16 21 C 0.22 5.25 4.23 -5.19 -0.02 5.23 16 22 C -0.53 -15.29 9.94 -34.44 -0.34 -15.64 16 23 H 0.07 2.36 8.06 -52.49 -0.42 1.94 16 24 C 0.07 2.12 5.47 -17.82 -0.10 2.02 16 25 N -0.90 -27.61 13.96 55.43 0.77 -26.84 16 26 Si 0.88 21.34 27.47 -169.99 -4.67 16.67 16 27 H -0.27 -6.41 7.11 56.52 0.40 -6.01 16 28 H -0.28 -6.89 7.11 56.52 0.40 -6.49 16 29 H -0.26 -6.24 6.54 56.52 0.37 -5.87 16 30 H 0.09 0.97 5.12 -51.93 -0.27 0.71 16 31 H 0.07 0.91 8.14 -51.93 -0.42 0.48 16 32 H 0.07 0.81 8.14 -51.93 -0.42 0.39 16 33 H 0.15 1.66 7.60 -52.49 -0.40 1.26 16 34 H 0.14 0.85 8.06 -52.49 -0.42 0.42 16 35 H 0.13 0.86 8.06 -52.49 -0.42 0.44 16 36 H 0.07 0.26 8.14 -51.93 -0.42 -0.16 16 37 H 0.08 0.30 8.14 -51.93 -0.42 -0.12 16 38 H 0.39 0.46 9.12 45.56 0.42 0.87 16 39 H 0.14 1.72 7.65 -52.48 -0.40 1.32 16 40 H 0.05 0.62 7.04 -51.93 -0.37 0.25 16 41 H 0.06 0.80 6.06 -51.93 -0.31 0.49 16 42 H 0.08 1.25 8.07 -51.93 -0.42 0.83 16 43 H 0.04 1.12 6.48 -51.93 -0.34 0.78 16 44 H 0.03 0.66 7.50 -51.93 -0.39 0.27 16 45 H 0.27 7.62 8.31 -40.82 -0.34 7.28 16 LS Contribution 394.54 15.07 5.95 5.95 Total: -1.00 -38.67 394.54 -7.77 -46.43 By element: Atomic # 1 Polarization: 5.45 SS G_CDS: -4.92 Total: 0.53 kcal Atomic # 6 Polarization: 5.02 SS G_CDS: -2.96 Total: 2.07 kcal Atomic # 7 Polarization: -39.69 SS G_CDS: 0.25 Total: -39.44 kcal Atomic # 8 Polarization: -30.79 SS G_CDS: -1.41 Total: -32.21 kcal Atomic # 14 Polarization: 21.34 SS G_CDS: -4.67 Total: 16.67 kcal Total LS contribution 5.95 Total: 5.95 kcal Total: -38.67 -7.77 -46.43 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000860079553.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -32.663 kcal (2) G-P(sol) polarization free energy of solvation -38.668 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -71.331 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.767 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -46.435 kcal (6) G-S(sol) free energy of system = (1) + (5) -79.097 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.67 seconds