Wall clock time and date at job start Wed Apr 1 2020 03:06:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 H 1.09002 * 109.46670 * 2 1 4 4 O 1.45197 * 109.47339 * 120.00165 * 2 1 3 5 5 C 1.34712 * 116.99839 * 270.00327 * 4 2 1 6 6 O 1.21468 * 120.00191 * 359.97438 * 5 4 2 7 7 C 1.47749 * 119.99743 * 180.02562 * 5 4 2 8 8 C 1.39728 * 120.08154 * 359.71658 * 7 5 4 9 9 C 1.38030 * 120.13403 * 179.74737 * 8 7 5 10 10 C 1.38118 * 120.30022 * 0.55767 * 9 8 7 11 11 C 1.39621 * 120.16100 * 359.70194 * 10 9 8 12 12 C 1.43202 * 120.06523 * 180.02562 * 11 10 9 13 13 C 8.35108 * 105.65991 * 82.50386 * 2 1 3 14 14 C 9.68906 * 104.82960 * 78.54346 * 2 1 3 15 15 O 1.42896 * 109.47206 * 190.58607 * 14 13 12 16 16 C 1.39291 * 119.86165 * 0.02562 * 11 10 9 17 17 C 1.50702 * 109.47230 * 240.00733 * 2 1 3 18 18 O 1.21283 * 119.99478 * 244.99823 * 17 2 1 19 19 N 1.34773 * 120.00430 * 64.99170 * 17 2 1 20 20 C 1.46506 * 119.99969 * 0.02562 * 19 17 2 21 21 C 1.46499 * 120.00036 * 179.72648 * 19 17 2 22 22 C 1.50703 * 109.47126 * 270.27831 * 21 19 17 23 23 H 1.08002 * 119.99820 * 359.97438 * 22 21 19 24 24 C 1.37876 * 119.99889 * 180.02562 * 22 21 19 25 25 N 1.31520 * 119.99905 * 179.97438 * 24 22 21 26 26 Si 1.86803 * 120.00302 * 359.97438 * 24 22 21 27 27 H 1.48503 * 109.47082 * 89.99861 * 26 24 22 28 28 H 1.48492 * 109.47090 * 210.00394 * 26 24 22 29 29 H 1.48499 * 109.46812 * 330.00449 * 26 24 22 30 30 H 1.09005 * 109.47553 * 60.00228 * 1 2 3 31 31 H 1.09002 * 109.46624 * 179.97438 * 1 2 3 32 32 H 1.08998 * 109.46972 * 299.99294 * 1 2 3 33 33 H 1.07999 * 119.93213 * 0.02881 * 8 7 5 34 34 H 1.07993 * 119.84662 * 180.25941 * 9 8 7 35 35 H 1.08001 * 119.92107 * 179.72054 * 10 9 8 36 36 H 1.09002 * 109.46638 * 310.58804 * 14 13 12 37 37 H 1.09004 * 109.46934 * 70.58335 * 14 13 12 38 38 H 0.96698 * 114.00006 * 179.97438 * 15 14 13 39 39 H 1.08003 * 120.14598 * 180.02562 * 16 11 10 40 40 H 1.08999 * 109.46892 * 269.72362 * 20 19 17 41 41 H 1.09000 * 109.46803 * 29.71536 * 20 19 17 42 42 H 1.09000 * 109.47214 * 149.72329 * 20 19 17 43 43 H 1.08994 * 109.47173 * 30.28203 * 21 19 17 44 44 H 1.09005 * 109.47077 * 150.28374 * 21 19 17 45 45 H 0.96998 * 119.99775 * 179.97438 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 8 2.0140 -0.6845 1.1855 5 6 2.2178 0.0667 2.2850 6 8 1.9977 1.2608 2.2541 7 6 2.7102 -0.5618 3.5282 8 6 2.9594 -1.9362 3.5670 9 6 3.4244 -2.5236 4.7263 10 6 3.6356 -1.7605 5.8580 11 6 3.3855 -0.3871 5.8347 12 6 3.6056 0.4022 7.0091 13 6 3.7842 1.0490 7.9724 14 6 4.0099 1.8604 9.1797 15 8 2.7526 2.2823 9.7120 16 6 2.9215 0.2137 4.6668 17 6 2.0324 -0.7103 -1.2306 18 8 2.6530 -1.7465 -1.1216 19 7 1.7918 -0.1940 -2.4521 20 6 1.0425 1.0580 -2.5836 21 6 2.2854 -0.8814 -3.6479 22 6 3.6681 -0.3821 -3.9797 23 1 4.1325 0.3722 -3.3618 24 6 4.3397 -0.8874 -5.0726 25 7 5.5461 -0.4512 -5.3625 26 14 3.5361 -2.1915 -6.1418 27 1 2.7676 -1.5350 -7.2298 28 1 4.5841 -3.0625 -6.7319 29 1 2.6177 -3.0136 -5.3136 30 1 -0.3634 0.5138 -0.8900 31 1 -0.3633 -1.0277 -0.0005 32 1 -0.3633 0.5137 0.8900 33 1 2.7922 -2.5392 2.6868 34 1 3.6195 -3.5855 4.7499 35 1 3.9952 -2.2273 6.7631 36 1 4.5382 1.2647 9.9241 37 1 4.6078 2.7350 8.9232 38 1 2.8250 2.8223 10.5109 39 1 2.7270 1.2758 4.6435 40 1 -0.0212 0.8370 -2.6727 41 1 1.2123 1.6773 -1.7029 42 1 1.3786 1.5909 -3.4731 43 1 2.3218 -1.9546 -3.4611 44 1 1.6162 -0.6807 -4.4846 45 1 6.0188 -0.8070 -6.1312 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000860079553.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:06:36 Heat of formation + Delta-G solvation = -105.839672 kcal Electronic energy + Delta-G solvation = -28456.121410 eV Core-core repulsion = 24211.870711 eV Total energy + Delta-G solvation = -4244.250700 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 345.145 amu Computer time = 0.73 seconds Orbital eigenvalues (eV) -42.08948 -40.83964 -39.93617 -38.00475 -37.71805 -36.76873 -35.10853 -34.84921 -33.33787 -32.35377 -31.88149 -30.17217 -27.79901 -27.71269 -26.37624 -25.44578 -24.14361 -23.64186 -22.10622 -20.48376 -20.05562 -19.16643 -18.52797 -18.48150 -18.09263 -17.47351 -17.34835 -17.26801 -16.75238 -16.51998 -16.26627 -15.91725 -15.77964 -15.62528 -15.04870 -14.83754 -14.83106 -14.45043 -14.38291 -14.15882 -13.74470 -13.68212 -13.49680 -13.30908 -13.12227 -12.98280 -12.86334 -12.67419 -12.56296 -12.42861 -12.19692 -12.01612 -12.01176 -11.97294 -11.77893 -11.75394 -10.83166 -10.73099 -10.70897 -10.26762 -9.74020 -9.52459 -8.35105 -6.41664 -0.58474 -0.18644 1.05729 1.18428 1.33094 1.37989 1.44150 1.48885 1.54619 1.76599 2.26649 2.31366 2.69371 2.89335 2.98776 3.32466 3.36947 3.69057 3.74075 3.79811 3.81733 3.97278 4.01450 4.19792 4.26341 4.29507 4.41370 4.49394 4.54420 4.58509 4.60747 4.66995 4.75656 4.83935 4.86851 4.91556 5.05515 5.06565 5.10779 5.21310 5.23229 5.42375 5.49693 5.63311 6.19083 6.33255 6.39294 6.52043 6.59925 6.88933 7.11888 7.25939 8.81975 Molecular weight = 345.15amu Principal moments of inertia in cm(-1) A = 0.018200 B = 0.001930 C = 0.001882 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1538.125063 B =14504.888378 C =14874.812766 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.161 4.161 2 C 0.077 3.923 3 H 0.111 0.889 4 O -0.333 6.333 5 C 0.509 3.491 6 O -0.526 6.526 7 C -0.139 4.139 8 C -0.052 4.052 9 C -0.118 4.118 10 C -0.047 4.047 11 C -0.011 4.011 12 C -0.150 4.150 13 C -0.160 4.160 14 C 0.187 3.813 15 O -0.593 6.593 16 C -0.038 4.038 17 C 0.503 3.497 18 O -0.573 6.573 19 N -0.596 5.596 20 C 0.066 3.934 21 C 0.225 3.775 22 C -0.543 4.543 23 H 0.025 0.975 24 C 0.010 3.990 25 N -0.945 5.945 26 Si 0.952 3.048 27 H -0.249 1.249 28 H -0.283 1.283 29 H -0.252 1.252 30 H 0.112 0.888 31 H 0.074 0.926 32 H 0.084 0.916 33 H 0.145 0.855 34 H 0.175 0.825 35 H 0.164 0.836 36 H 0.105 0.895 37 H 0.097 0.903 38 H 0.411 0.589 39 H 0.133 0.867 40 H 0.096 0.904 41 H 0.081 0.919 42 H 0.075 0.925 43 H 0.025 0.975 44 H 0.060 0.940 45 H 0.269 0.731 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.879 1.368 27.950 29.676 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.218 4.218 2 C 0.018 3.982 3 H 0.128 0.872 4 O -0.249 6.249 5 C 0.355 3.645 6 O -0.417 6.417 7 C -0.141 4.141 8 C -0.070 4.070 9 C -0.135 4.135 10 C -0.065 4.065 11 C -0.011 4.011 12 C -0.150 4.150 13 C -0.160 4.160 14 C 0.111 3.889 15 O -0.405 6.405 16 C -0.056 4.056 17 C 0.290 3.710 18 O -0.452 6.452 19 N -0.328 5.328 20 C -0.076 4.076 21 C 0.103 3.897 22 C -0.581 4.581 23 H 0.043 0.957 24 C -0.188 4.188 25 N -0.585 5.585 26 Si 0.774 3.226 27 H -0.173 1.173 28 H -0.208 1.208 29 H -0.176 1.176 30 H 0.130 0.870 31 H 0.093 0.907 32 H 0.103 0.897 33 H 0.163 0.837 34 H 0.192 0.808 35 H 0.182 0.818 36 H 0.122 0.878 37 H 0.115 0.885 38 H 0.264 0.736 39 H 0.151 0.849 40 H 0.114 0.886 41 H 0.099 0.901 42 H 0.094 0.906 43 H 0.043 0.957 44 H 0.078 0.922 45 H 0.078 0.922 Dipole moment (debyes) X Y Z Total from point charges -9.731 0.858 27.315 29.009 hybrid contribution 0.705 0.314 -0.551 0.948 sum -9.026 1.172 26.764 28.269 Atomic orbital electron populations 1.22304 0.88670 1.04822 1.05973 1.22611 0.98250 0.96601 0.80694 0.87176 1.86629 1.77028 1.41504 1.19719 1.21574 0.73776 0.84909 0.84210 1.90789 1.49681 1.16534 1.84679 1.18935 1.08945 0.95478 0.90693 1.21879 0.92583 0.92592 0.99932 1.21489 0.98680 1.02397 0.90937 1.21873 0.93639 0.91095 0.99903 1.15822 1.03532 0.93018 0.88774 1.19285 0.99860 1.00480 0.95371 1.22755 1.00588 0.96821 0.95842 1.19072 0.85913 0.96058 0.87832 1.86487 1.30077 1.74688 1.49216 1.21252 0.94047 1.00210 0.90107 1.20536 0.79934 0.85446 0.85065 1.90658 1.41838 1.26021 1.86687 1.47804 1.54121 1.25537 1.05320 1.22256 0.96866 0.84395 1.04070 1.19436 0.93413 0.93229 0.83647 1.21561 1.01438 1.23362 1.11783 0.95689 1.25912 0.95219 0.98804 0.98893 1.70064 1.14141 1.45156 1.29163 0.85652 0.78858 0.78972 0.79125 1.17288 1.20833 1.17590 0.86953 0.90696 0.89718 0.83746 0.80799 0.81809 0.87763 0.88487 0.73639 0.84941 0.88597 0.90059 0.90620 0.95668 0.92226 0.92207 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -3.75 9.27 71.98 0.67 -3.08 16 2 C 0.08 2.53 2.17 29.85 0.06 2.60 16 3 H 0.11 3.58 6.15 -2.39 -0.01 3.57 16 4 O -0.33 -11.56 8.66 -49.84 -0.43 -11.99 16 5 C 0.51 16.39 7.87 70.34 0.55 16.95 16 6 O -0.53 -18.31 15.60 19.94 0.31 -18.00 16 7 C -0.14 -3.75 5.87 -20.13 -0.12 -3.87 16 8 C -0.05 -1.15 9.61 22.58 0.22 -0.93 16 9 C -0.12 -1.84 10.02 22.19 0.22 -1.62 16 10 C -0.05 -0.76 9.74 22.58 0.22 -0.54 16 11 C -0.01 -0.25 5.72 -21.45 -0.12 -0.37 16 12 C -0.15 -3.29 13.23 30.02 0.40 -2.89 16 13 C -0.16 -3.06 13.73 31.13 0.43 -2.63 16 14 C 0.19 1.84 7.52 70.18 0.53 2.37 16 15 O -0.59 -7.14 13.62 -148.98 -2.03 -9.17 16 16 C -0.04 -0.95 9.29 22.80 0.21 -0.74 16 17 C 0.50 21.42 7.10 87.66 0.62 22.04 16 18 O -0.57 -29.93 16.09 15.71 0.25 -29.67 16 19 N -0.60 -24.23 2.86 -851.12 -2.43 -26.66 16 20 C 0.07 1.84 8.92 127.77 1.14 2.98 16 21 C 0.22 10.83 4.23 85.63 0.36 11.19 16 22 C -0.54 -32.20 9.94 25.60 0.25 -31.95 16 23 H 0.02 1.67 8.06 -2.91 -0.02 1.65 16 24 C 0.01 0.58 5.47 84.65 0.46 1.04 16 25 N -0.95 -60.14 13.96 21.45 0.30 -59.84 16 26 Si 0.95 43.98 27.47 68.60 1.88 45.86 16 27 H -0.25 -10.44 7.11 99.48 0.71 -9.73 16 28 H -0.28 -12.97 7.11 99.48 0.71 -12.26 16 29 H -0.25 -11.12 6.54 99.48 0.65 -10.47 16 30 H 0.11 2.07 5.12 -2.38 -0.01 2.05 16 31 H 0.07 1.74 8.14 -2.39 -0.02 1.72 16 32 H 0.08 1.78 8.14 -2.39 -0.02 1.76 16 33 H 0.14 3.31 7.60 -2.91 -0.02 3.29 16 34 H 0.17 1.54 8.06 -2.91 -0.02 1.51 16 35 H 0.16 1.60 8.06 -2.91 -0.02 1.58 16 36 H 0.10 0.41 8.14 -2.39 -0.02 0.39 16 37 H 0.10 0.54 8.14 -2.38 -0.02 0.53 16 38 H 0.41 0.13 9.12 -74.06 -0.68 -0.55 16 39 H 0.13 3.47 7.65 -2.91 -0.02 3.45 16 40 H 0.10 1.89 7.04 -2.39 -0.02 1.88 16 41 H 0.08 1.96 6.06 -2.39 -0.01 1.95 16 42 H 0.07 2.23 8.07 -2.39 -0.02 2.21 16 43 H 0.03 1.31 6.48 -2.39 -0.02 1.30 16 44 H 0.06 2.53 7.50 -2.38 -0.02 2.51 16 45 H 0.27 15.85 8.31 -92.71 -0.77 15.08 16 Total: -1.00 -89.80 394.54 4.28 -85.52 By element: Atomic # 1 Polarization: 13.10 SS G_CDS: 0.32 Total: 13.42 kcal Atomic # 6 Polarization: 4.43 SS G_CDS: 6.11 Total: 10.54 kcal Atomic # 7 Polarization: -84.37 SS G_CDS: -2.13 Total: -86.50 kcal Atomic # 8 Polarization: -66.94 SS G_CDS: -1.90 Total: -68.84 kcal Atomic # 14 Polarization: 43.98 SS G_CDS: 1.88 Total: 45.86 kcal Total: -89.80 4.28 -85.52 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000860079553.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -20.324 kcal (2) G-P(sol) polarization free energy of solvation -89.797 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -110.120 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.281 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -85.516 kcal (6) G-S(sol) free energy of system = (1) + (5) -105.840 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.73 seconds