Wall clock time and date at job start Wed Apr 1 2020 03:16:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 O 1.45205 * 109.47094 * 2 1 4 4 C 1.34222 * 116.99494 * 179.97438 * 3 2 1 5 5 O 1.20821 * 120.00635 * 359.73088 * 4 3 2 6 6 C 1.50707 * 119.99506 * 179.97438 * 4 3 2 7 7 S 1.81402 * 112.84738 * 161.92436 * 6 4 3 8 8 O 1.42101 * 110.54083 * 55.58156 * 7 6 4 9 9 O 1.42101 * 110.54382 * 192.33044 * 7 6 4 10 10 N 1.65601 * 104.45034 * 303.95386 * 7 6 4 11 11 C 1.46505 * 119.99961 * 277.11393 * 10 7 6 12 12 C 1.50694 * 109.46919 * 98.53369 * 11 10 7 13 13 H 1.08004 * 120.00398 * 359.97438 * 12 11 10 14 14 C 1.37876 * 120.00060 * 179.97438 * 12 11 10 15 15 N 1.31513 * 119.99879 * 359.97438 * 14 12 11 16 16 Si 1.86799 * 120.00222 * 179.97438 * 14 12 11 17 17 H 1.48501 * 109.47134 * 89.99857 * 16 14 12 18 18 H 1.48496 * 109.47299 * 209.99856 * 16 14 12 19 19 H 1.48500 * 109.47177 * 330.00087 * 16 14 12 20 20 C 1.46502 * 119.99945 * 97.11951 * 10 7 6 21 21 C 1.53001 * 109.47330 * 94.57780 * 20 10 7 22 22 C 1.53001 * 117.49666 * 243.62102 * 21 20 10 23 23 C 1.53000 * 117.49688 * 174.99698 * 21 20 10 24 24 C 1.53784 * 113.61474 * 30.62487 * 6 4 3 25 25 C 1.53780 * 87.07802 * 270.88415 * 24 6 4 26 26 C 1.53776 * 113.61695 * 293.12688 * 6 4 3 27 27 H 1.09001 * 109.47126 * 179.97438 * 1 2 3 28 28 H 1.08998 * 109.47433 * 300.00028 * 1 2 3 29 29 H 1.09005 * 109.47008 * 60.00201 * 1 2 3 30 30 H 1.09002 * 109.46823 * 240.00356 * 2 1 3 31 31 H 1.09001 * 109.46802 * 120.00261 * 2 1 3 32 32 H 1.08997 * 109.46985 * 218.52985 * 11 10 7 33 33 H 1.08997 * 109.47012 * 338.53192 * 11 10 7 34 34 H 0.97004 * 120.00320 * 180.02562 * 15 14 12 35 35 H 1.09001 * 109.47106 * 214.58261 * 20 10 7 36 36 H 1.09001 * 109.47111 * 334.57701 * 20 10 7 37 37 H 1.09003 * 115.54754 * 29.33206 * 21 20 10 38 38 H 1.08994 * 117.49984 * 0.02562 * 22 21 20 39 39 H 1.09001 * 117.49204 * 145.02673 * 22 21 20 40 40 H 1.08994 * 117.49846 * 214.97665 * 23 21 20 41 41 H 1.09005 * 117.49888 * 0.02562 * 23 21 20 42 42 H 1.09008 * 113.61156 * 25.42795 * 24 6 4 43 43 H 1.08993 * 113.61700 * 156.33062 * 24 6 4 44 44 H 1.09005 * 113.60876 * 220.02151 * 25 24 6 45 45 H 1.08995 * 113.62286 * 89.11365 * 25 24 6 46 46 H 1.09002 * 113.60904 * 203.66341 * 26 6 4 47 47 H 1.09003 * 113.61172 * 334.56028 * 26 6 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0140 1.3690 0.0000 4 6 3.3447 1.5448 0.0005 5 8 4.0807 0.5866 0.0059 6 6 3.9207 2.9374 0.0000 7 16 5.6582 2.9812 0.5195 8 8 6.4426 2.1158 -0.2900 9 8 6.0688 4.3173 0.7750 10 7 5.6620 2.2606 2.0105 11 6 5.3181 3.0407 3.2019 12 6 3.8774 2.7915 3.5669 13 1 3.2777 2.1196 2.9707 14 6 3.3248 3.4213 4.6619 15 7 4.0551 4.2390 5.3881 16 14 1.5387 3.1130 5.1138 17 1 1.4560 1.9604 6.0466 18 1 0.9783 4.3217 5.7697 19 1 0.7619 2.8116 3.8846 20 6 6.0094 0.8431 2.1381 21 6 7.4983 0.7102 2.4641 22 6 8.3860 0.0043 1.4371 23 6 8.0356 -0.6929 2.7533 24 6 3.0354 3.9705 0.7167 25 6 2.3424 4.1991 -0.6369 26 6 3.6454 3.7174 -1.2963 27 1 -0.3633 -1.0277 -0.0005 28 1 -0.3634 0.5138 0.8899 29 1 -0.3633 0.5138 -0.8900 30 1 1.8933 -0.5138 -0.8900 31 1 1.8933 -0.5139 0.8900 32 1 5.9598 2.7407 4.0303 33 1 5.4626 4.1012 2.9960 34 1 3.6664 4.6819 6.1587 35 1 5.4207 0.3954 2.9389 36 1 5.7956 0.3307 1.2001 37 1 7.9337 1.5404 3.0202 38 1 7.9093 -0.3650 0.5292 39 1 9.4057 0.3701 1.3174 40 1 8.8249 -0.7857 3.4993 41 1 7.3284 -1.5213 2.7109 42 1 2.3824 3.5358 1.4736 43 1 3.5843 4.8398 1.0787 44 1 2.1121 5.2454 -0.8382 45 1 1.4943 3.5369 -0.8108 46 1 4.3612 4.5176 -1.4847 47 1 3.4851 3.0784 -2.1647 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000866735891.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:16:28 Heat of formation + Delta-G solvation = -121.422242 kcal Electronic energy + Delta-G solvation = -31564.110497 eV Core-core repulsion = 27454.628038 eV Total energy + Delta-G solvation = -4109.482459 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 345.149 amu Computer time = 0.74 seconds Orbital eigenvalues (eV) -42.03458 -39.39807 -38.88116 -38.24813 -37.69090 -37.06221 -36.43283 -34.34648 -32.58103 -29.62810 -28.41683 -27.10622 -26.92922 -24.74055 -24.32670 -23.15753 -22.94663 -21.60047 -21.12598 -19.85573 -18.88410 -18.67046 -18.44417 -18.22007 -17.58553 -17.23514 -17.03518 -16.32925 -16.09488 -15.64832 -15.44982 -15.22777 -15.04718 -14.61845 -14.39661 -14.04972 -13.78213 -13.70411 -13.60529 -13.55267 -13.46075 -13.22078 -13.15609 -12.98448 -12.93133 -12.86584 -12.58654 -12.48778 -12.39806 -12.30711 -12.15262 -11.93476 -11.80125 -11.58269 -11.54936 -11.40795 -11.28010 -11.19435 -10.72040 -10.55841 -9.72193 -8.14528 -6.27432 -0.82577 0.89457 1.32794 1.41975 1.43924 1.52962 1.74211 2.42090 2.66423 2.93400 2.97072 3.06806 3.16787 3.36733 3.54522 3.68255 3.88039 3.99712 4.00772 4.06268 4.07402 4.17416 4.33491 4.35714 4.45969 4.48163 4.59485 4.77260 4.79290 4.80877 4.89860 4.92194 4.99887 5.00836 5.04134 5.09943 5.11047 5.28905 5.30281 5.31177 5.33408 5.40757 5.53036 5.75486 5.91241 6.11975 6.51226 6.81780 7.41580 8.93521 Molecular weight = 345.15amu Principal moments of inertia in cm(-1) A = 0.007861 B = 0.006890 C = 0.005344 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3560.912131 B = 4063.133498 C = 5238.209585 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C 0.048 3.952 3 O -0.339 6.339 4 C 0.527 3.473 5 O -0.514 6.514 6 C -0.608 4.608 7 S 2.634 3.366 8 O -0.962 6.962 9 O -0.975 6.975 10 N -0.979 5.979 11 C 0.259 3.741 12 C -0.529 4.529 13 H 0.063 0.937 14 C 0.020 3.980 15 N -0.924 5.924 16 Si 0.946 3.054 17 H -0.280 1.280 18 H -0.284 1.284 19 H -0.255 1.255 20 C 0.162 3.838 21 C -0.196 4.196 22 C -0.172 4.172 23 C -0.155 4.155 24 C -0.093 4.093 25 C -0.110 4.110 26 C -0.097 4.097 27 H 0.103 0.897 28 H 0.059 0.941 29 H 0.077 0.923 30 H 0.081 0.919 31 H 0.063 0.937 32 H 0.016 0.984 33 H 0.026 0.974 34 H 0.265 0.735 35 H 0.069 0.931 36 H 0.092 0.908 37 H 0.089 0.911 38 H 0.092 0.908 39 H 0.099 0.901 40 H 0.109 0.891 41 H 0.104 0.896 42 H 0.088 0.912 43 H 0.095 0.905 44 H 0.105 0.895 45 H 0.105 0.895 46 H 0.114 0.886 47 H 0.109 0.891 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.109 -6.580 -12.526 15.412 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C -0.025 4.025 3 O -0.255 6.255 4 C 0.370 3.630 5 O -0.404 6.404 6 C -0.698 4.698 7 S 2.726 3.274 8 O -0.953 6.953 9 O -0.966 6.966 10 N -0.816 5.816 11 C 0.136 3.864 12 C -0.568 4.568 13 H 0.081 0.919 14 C -0.180 4.180 15 N -0.564 5.564 16 Si 0.771 3.229 17 H -0.206 1.206 18 H -0.210 1.210 19 H -0.179 1.179 20 C 0.036 3.964 21 C -0.216 4.216 22 C -0.209 4.209 23 C -0.192 4.192 24 C -0.131 4.131 25 C -0.148 4.148 26 C -0.136 4.136 27 H 0.122 0.878 28 H 0.078 0.922 29 H 0.096 0.904 30 H 0.099 0.901 31 H 0.081 0.919 32 H 0.034 0.966 33 H 0.044 0.956 34 H 0.074 0.926 35 H 0.087 0.913 36 H 0.110 0.890 37 H 0.107 0.893 38 H 0.111 0.889 39 H 0.117 0.883 40 H 0.127 0.873 41 H 0.122 0.878 42 H 0.106 0.894 43 H 0.114 0.886 44 H 0.124 0.876 45 H 0.124 0.876 46 H 0.132 0.868 47 H 0.127 0.873 Dipole moment (debyes) X Y Z Total from point charges -5.198 -6.440 -12.813 15.253 hybrid contribution -0.971 -0.202 1.121 1.497 sum -6.168 -6.642 -11.691 14.794 Atomic orbital electron populations 1.21826 0.90121 1.04524 1.03690 1.23440 0.97303 0.78846 1.02885 1.86472 1.22116 1.33905 1.83028 1.21325 0.81850 0.88408 0.71448 1.90674 1.60661 1.42518 1.46510 1.31979 1.24956 0.98911 1.13946 1.04193 0.76478 0.73219 0.73512 1.93503 1.65877 1.66543 1.69341 1.93545 1.79743 1.38779 1.84508 1.57171 1.82427 1.19574 1.22458 1.18811 0.95318 0.90092 0.82182 1.21600 0.96365 1.26744 1.12138 0.91899 1.25654 1.01659 0.94654 0.95987 1.70056 1.38123 1.29941 1.18262 0.85729 0.80599 0.77526 0.79020 1.20599 1.20993 1.17903 1.20823 0.92600 0.80471 1.02502 1.22784 0.95911 0.97459 1.05489 1.23033 1.00289 1.03865 0.93699 1.23010 1.03279 0.93923 0.99004 1.22695 0.96880 0.94624 0.98901 1.22903 0.95985 1.04052 0.91869 1.22873 1.01003 0.98241 0.91461 0.87821 0.92182 0.90406 0.90097 0.91881 0.96590 0.95612 0.92567 0.91255 0.88996 0.89305 0.88931 0.88297 0.87260 0.87800 0.89368 0.88631 0.87638 0.87631 0.86758 0.87277 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.36 10.29 71.98 0.74 -1.61 16 2 C 0.05 1.12 6.19 71.98 0.45 1.57 16 3 O -0.34 -9.86 8.32 -51.34 -0.43 -10.28 16 4 C 0.53 17.94 7.00 71.24 0.50 18.44 16 5 O -0.51 -19.27 12.71 25.90 0.33 -18.94 16 6 C -0.61 -20.65 1.41 -11.01 -0.02 -20.66 16 7 S 2.63 109.92 4.52 -56.49 -0.26 109.66 16 8 O -0.96 -41.62 16.12 -122.84 -1.98 -43.60 16 9 O -0.98 -45.26 16.10 -127.65 -2.06 -47.31 16 10 N -0.98 -43.57 2.59 -519.84 -1.34 -44.91 16 11 C 0.26 13.24 5.43 85.63 0.46 13.71 16 12 C -0.53 -27.01 7.85 25.60 0.20 -26.81 16 13 H 0.06 3.11 7.44 -2.91 -0.02 3.09 16 14 C 0.02 1.07 5.46 84.65 0.46 1.53 16 15 N -0.92 -52.31 13.29 21.45 0.28 -52.03 16 16 Si 0.95 40.83 29.54 68.60 2.03 42.86 16 17 H -0.28 -12.02 7.11 99.48 0.71 -11.31 16 18 H -0.28 -12.19 7.11 99.48 0.71 -11.48 16 19 H -0.26 -10.26 7.11 99.48 0.71 -9.56 16 20 C 0.16 6.56 5.03 86.38 0.43 6.99 16 21 C -0.20 -7.24 6.01 -10.79 -0.06 -7.30 16 22 C -0.17 -5.46 10.18 30.60 0.31 -5.15 16 23 C -0.15 -4.41 10.25 30.60 0.31 -4.10 16 24 C -0.09 -3.07 6.18 31.12 0.19 -2.87 16 25 C -0.11 -2.53 7.66 31.12 0.24 -2.29 16 26 C -0.10 -2.40 7.25 31.12 0.23 -2.17 16 27 H 0.10 1.18 8.14 -2.39 -0.02 1.16 16 28 H 0.06 1.11 8.14 -2.39 -0.02 1.09 16 29 H 0.08 1.09 8.14 -2.38 -0.02 1.07 16 30 H 0.08 1.68 8.14 -2.39 -0.02 1.66 16 31 H 0.06 1.59 8.13 -2.39 -0.02 1.57 16 32 H 0.02 0.88 8.13 -2.39 -0.02 0.86 16 33 H 0.03 1.44 6.92 -2.39 -0.02 1.42 16 34 H 0.27 14.25 8.31 -92.71 -0.77 13.47 16 35 H 0.07 2.86 8.11 -2.39 -0.02 2.84 16 36 H 0.09 3.70 4.80 -2.39 -0.01 3.68 16 37 H 0.09 3.53 8.14 -2.39 -0.02 3.51 16 38 H 0.09 3.04 8.03 -2.39 -0.02 3.02 16 39 H 0.10 2.85 8.14 -2.39 -0.02 2.83 16 40 H 0.11 2.68 8.14 -2.39 -0.02 2.66 16 41 H 0.10 2.71 8.14 -2.38 -0.02 2.69 16 42 H 0.09 3.21 6.96 -2.38 -0.02 3.20 16 43 H 0.10 3.43 7.59 -2.39 -0.02 3.41 16 44 H 0.11 1.89 8.14 -2.38 -0.02 1.87 16 45 H 0.11 2.21 7.04 -2.39 -0.02 2.20 16 46 H 0.11 2.55 8.10 -2.39 -0.02 2.53 16 47 H 0.11 2.20 8.09 -2.39 -0.02 2.18 16 Total: -1.00 -67.62 391.61 1.98 -65.64 By element: Atomic # 1 Polarization: 28.70 SS G_CDS: 0.96 Total: 29.66 kcal Atomic # 6 Polarization: -35.19 SS G_CDS: 4.45 Total: -30.74 kcal Atomic # 7 Polarization: -95.88 SS G_CDS: -1.06 Total: -96.94 kcal Atomic # 8 Polarization: -116.00 SS G_CDS: -4.13 Total: -120.14 kcal Atomic # 14 Polarization: 40.83 SS G_CDS: 2.03 Total: 42.86 kcal Atomic # 16 Polarization: 109.92 SS G_CDS: -0.26 Total: 109.66 kcal Total: -67.62 1.98 -65.64 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000866735891.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -55.784 kcal (2) G-P(sol) polarization free energy of solvation -67.622 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -123.406 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.984 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.638 kcal (6) G-S(sol) free energy of system = (1) + (5) -121.422 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.74 seconds