Wall clock time and date at job start Wed Apr 1 2020 03:15:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 O 1.45199 * 109.46893 * 2 1 4 4 C 1.34228 * 116.99832 * 180.02562 * 3 2 1 5 5 O 1.20817 * 120.00205 * 359.97438 * 4 3 2 6 6 C 1.50700 * 120.00053 * 179.97438 * 4 3 2 7 7 S 1.81400 * 112.85126 * 179.97438 * 6 4 3 8 8 O 1.42098 * 110.53994 * 298.70931 * 7 6 4 9 9 O 1.42096 * 110.54034 * 161.96000 * 7 6 4 10 10 N 1.65595 * 104.44862 * 50.33390 * 7 6 4 11 11 C 1.46928 * 120.63205 * 269.97699 * 10 7 6 12 12 C 1.53159 * 108.76987 * 233.63241 * 11 10 7 13 13 C 1.53046 * 109.32667 * 305.35456 * 12 11 10 14 14 C 1.53039 * 109.52798 * 61.37318 * 13 12 11 15 15 H 1.08997 * 109.49901 * 58.58690 * 14 13 12 16 16 C 1.50696 * 109.50284 * 178.69012 * 14 13 12 17 17 H 1.08000 * 120.00264 * 119.99484 * 16 14 13 18 18 C 1.37877 * 119.99530 * 300.00247 * 16 14 13 19 19 N 1.31517 * 120.00484 * 359.97438 * 18 16 14 20 20 Si 1.86807 * 119.99593 * 179.97438 * 18 16 14 21 21 H 1.48493 * 109.46936 * 89.99885 * 20 18 16 22 22 H 1.48508 * 109.46931 * 209.99795 * 20 18 16 23 23 H 1.48500 * 109.47105 * 329.99605 * 20 18 16 24 24 C 1.46931 * 120.63003 * 89.99727 * 10 7 6 25 25 C 1.53783 * 113.61362 * 311.19588 * 6 4 3 26 26 C 1.53963 * 87.02003 * 89.22911 * 25 6 4 27 27 C 1.53781 * 87.11073 * 25.36150 * 26 25 6 28 28 H 1.08999 * 109.47139 * 179.97438 * 1 2 3 29 29 H 1.08990 * 109.47378 * 300.00283 * 1 2 3 30 30 H 1.09003 * 109.46709 * 60.00540 * 1 2 3 31 31 H 1.09004 * 109.47076 * 240.00125 * 2 1 3 32 32 H 1.08994 * 109.47254 * 119.99656 * 2 1 3 33 33 H 1.08999 * 109.58766 * 353.42088 * 11 10 7 34 34 H 1.08998 * 109.58326 * 113.84164 * 11 10 7 35 35 H 1.08996 * 109.48005 * 185.40991 * 12 11 10 36 36 H 1.08994 * 109.50349 * 65.31594 * 12 11 10 37 37 H 1.09002 * 109.46115 * 301.35771 * 13 12 11 38 38 H 1.09004 * 109.45806 * 181.38656 * 13 12 11 39 39 H 0.96997 * 120.00080 * 180.02562 * 19 18 16 40 40 H 1.08998 * 109.58425 * 6.59030 * 24 10 7 41 41 H 1.08995 * 109.70793 * 246.22649 * 24 10 7 42 42 H 1.09004 * 113.61306 * 203.74317 * 25 6 4 43 43 H 1.08993 * 113.61446 * 334.65080 * 25 6 4 44 44 H 1.09000 * 113.53030 * 270.81172 * 26 25 6 45 45 H 1.08997 * 113.66473 * 139.93315 * 26 25 6 46 46 H 1.08996 * 113.61145 * 220.08845 * 27 26 25 47 47 H 1.09004 * 113.69147 * 89.20124 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0140 1.3690 0.0000 4 6 3.3447 1.5449 -0.0005 5 8 4.0807 0.5868 -0.0005 6 6 3.9207 2.9374 -0.0012 7 16 5.7347 2.9495 -0.0011 8 8 6.2374 2.3141 1.1663 9 8 6.2248 4.2178 -0.4137 10 7 6.1547 1.9281 -1.2350 11 6 6.3515 0.4936 -0.9853 12 6 7.7322 0.0871 -1.5087 13 6 7.8555 0.4915 -2.9797 14 6 7.7193 2.0106 -3.1057 15 1 8.4917 2.4958 -2.5090 16 6 7.8728 2.4113 -4.5503 17 1 7.0680 2.9227 -5.0573 18 6 9.0408 2.1248 -5.2247 19 7 10.0210 1.5023 -4.6073 20 14 9.2308 2.6209 -7.0157 21 1 9.8131 3.9847 -7.0924 22 1 10.1299 1.6593 -7.7029 23 1 7.9004 2.6128 -7.6754 24 6 6.3381 2.4392 -2.6003 25 6 3.2982 3.8611 -1.0615 26 6 2.2496 4.2400 0.0003 27 6 3.2989 3.8617 1.0591 28 1 -0.3633 -1.0276 -0.0005 29 1 -0.3633 0.5138 0.8899 30 1 -0.3633 0.5138 -0.8901 31 1 1.8934 -0.5138 -0.8900 32 1 1.8934 -0.5137 0.8900 33 1 6.2944 0.2979 0.0855 34 1 5.5813 -0.0767 -1.5045 35 1 7.8525 -0.9923 -1.4169 36 1 8.5045 0.5905 -0.9272 37 1 7.0677 0.0071 -3.5566 38 1 8.8282 0.1811 -3.3613 39 1 10.8428 1.3011 -5.0817 40 1 6.2724 3.5271 -2.5950 41 1 5.5670 2.0296 -3.2527 42 1 3.9441 4.6895 -1.3523 43 1 2.8824 3.3270 -1.9158 44 1 1.3752 3.5892 0.0001 45 1 1.9907 5.2988 0.0011 46 1 2.8836 3.3282 1.9140 47 1 3.9456 4.6895 1.3501 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000867497056.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:15:48 Heat of formation + Delta-G solvation = -131.136282 kcal Electronic energy + Delta-G solvation = -30952.196744 eV Core-core repulsion = 26842.293052 eV Total energy + Delta-G solvation = -4109.903692 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 345.149 amu Computer time = 0.70 seconds Orbital eigenvalues (eV) -41.11843 -38.52901 -37.63144 -37.11915 -36.61417 -35.70862 -33.22238 -31.95919 -31.00813 -29.97094 -27.52615 -26.25118 -25.02818 -24.03975 -23.49211 -22.14171 -21.56529 -20.32532 -19.39494 -18.45919 -17.78939 -17.40723 -16.99305 -16.78442 -16.20054 -16.06075 -15.44478 -14.86876 -14.60522 -14.52009 -13.92124 -13.74374 -13.40593 -13.18213 -13.13682 -12.94023 -12.83722 -12.70211 -12.66968 -12.51204 -12.16275 -12.08391 -12.00861 -11.86742 -11.69701 -11.36749 -11.22958 -10.96309 -10.93795 -10.81722 -10.72705 -10.68000 -10.51500 -10.33069 -10.06001 -9.81416 -9.66475 -9.25506 -8.75477 -8.36680 -8.04765 -5.95566 -4.03217 0.36358 1.84996 2.22043 2.97115 3.32718 3.39356 3.41614 3.73505 3.85353 4.02538 4.25283 4.34762 4.45477 4.63186 4.66475 4.67774 4.88352 4.97763 5.18248 5.30692 5.33617 5.34387 5.44742 5.45092 5.49809 5.57279 5.61805 5.64178 5.93240 5.97678 6.05185 6.10890 6.31732 6.35461 6.53561 6.55746 6.71532 6.81822 7.04456 7.14753 7.34815 7.46307 7.54854 7.76802 8.03774 8.16948 8.45161 9.00101 9.60976 11.09719 Molecular weight = 345.15amu Principal moments of inertia in cm(-1) A = 0.014635 B = 0.003750 C = 0.003640 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1912.731069 B = 7465.819652 C = 7689.587499 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C 0.058 3.942 3 O -0.346 6.346 4 C 0.517 3.483 5 O -0.482 6.482 6 C -0.620 4.620 7 S 2.630 3.370 8 O -0.945 6.945 9 O -0.937 6.937 10 N -0.976 5.976 11 C 0.143 3.857 12 C -0.134 4.134 13 C -0.109 4.109 14 C 0.044 3.956 15 H 0.032 0.968 16 C -0.514 4.514 17 H 0.057 0.943 18 C 0.063 3.937 19 N -0.887 5.887 20 Si 0.892 3.108 21 H -0.281 1.281 22 H -0.287 1.287 23 H -0.275 1.275 24 C 0.124 3.876 25 C -0.096 4.096 26 C -0.125 4.125 27 C -0.099 4.099 28 H 0.080 0.920 29 H 0.066 0.934 30 H 0.067 0.933 31 H 0.074 0.926 32 H 0.072 0.928 33 H 0.083 0.917 34 H 0.060 0.940 35 H 0.054 0.946 36 H 0.056 0.944 37 H 0.033 0.967 38 H 0.093 0.907 39 H 0.260 0.740 40 H 0.077 0.923 41 H 0.053 0.947 42 H 0.115 0.885 43 H 0.091 0.909 44 H 0.099 0.901 45 H 0.081 0.919 46 H 0.090 0.910 47 H 0.102 0.898 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -19.700 0.073 10.521 22.333 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C -0.015 4.015 3 O -0.263 6.263 4 C 0.358 3.642 5 O -0.368 6.368 6 C -0.704 4.704 7 S 2.718 3.282 8 O -0.935 6.935 9 O -0.928 6.928 10 N -0.816 5.816 11 C 0.018 3.982 12 C -0.174 4.174 13 C -0.147 4.147 14 C 0.023 3.977 15 H 0.050 0.950 16 C -0.553 4.553 17 H 0.075 0.925 18 C -0.138 4.138 19 N -0.526 5.526 20 Si 0.720 3.280 21 H -0.207 1.207 22 H -0.213 1.213 23 H -0.200 1.200 24 C 0.000 4.000 25 C -0.134 4.134 26 C -0.163 4.163 27 C -0.137 4.137 28 H 0.099 0.901 29 H 0.085 0.915 30 H 0.086 0.914 31 H 0.093 0.907 32 H 0.091 0.909 33 H 0.101 0.899 34 H 0.078 0.922 35 H 0.073 0.927 36 H 0.075 0.925 37 H 0.052 0.948 38 H 0.111 0.889 39 H 0.070 0.930 40 H 0.095 0.905 41 H 0.072 0.928 42 H 0.133 0.867 43 H 0.110 0.890 44 H 0.117 0.883 45 H 0.099 0.901 46 H 0.109 0.891 47 H 0.120 0.880 Dipole moment (debyes) X Y Z Total from point charges -18.815 0.143 11.067 21.829 hybrid contribution -0.414 -0.247 -1.243 1.333 sum -19.228 -0.104 9.824 21.592 Atomic orbital electron populations 1.21802 0.92499 1.03075 1.03468 1.23134 0.95368 0.79905 1.03120 1.86452 1.23516 1.32467 1.83838 1.21415 0.81288 0.88884 0.72642 1.90831 1.59668 1.41992 1.44334 1.32376 1.29986 0.97640 1.10398 1.04681 0.75125 0.74151 0.74267 1.93545 1.75348 1.75841 1.48812 1.93614 1.74978 1.41945 1.82233 1.57463 1.81272 1.19750 1.23129 1.21361 0.97161 0.78855 1.00861 1.22025 0.95969 0.99319 1.00051 1.21574 1.03157 0.98519 0.91420 1.18927 0.90131 0.92884 0.95717 0.94971 1.21089 1.00762 1.37665 0.95823 0.92504 1.24943 0.95817 0.95042 0.98035 1.69887 1.05374 1.40875 1.36419 0.86600 0.77938 0.78320 0.85121 1.20698 1.21327 1.19973 1.21852 1.01179 0.98082 0.78919 1.22723 0.98282 0.96965 0.95431 1.22923 0.97181 1.02499 0.93660 1.22618 0.98754 0.96585 0.95772 0.90123 0.91537 0.91415 0.90746 0.90929 0.89893 0.92187 0.92748 0.92494 0.94787 0.88857 0.92996 0.90476 0.92824 0.86717 0.89044 0.88294 0.90066 0.89092 0.87979 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.91 10.29 37.16 0.38 -0.53 16 2 C 0.06 0.52 6.19 37.16 0.23 0.75 16 3 O -0.35 -3.79 8.32 -39.25 -0.33 -4.11 16 4 C 0.52 6.95 7.04 36.01 0.25 7.21 16 5 O -0.48 -7.57 11.34 -18.80 -0.21 -7.79 16 6 C -0.62 -8.08 1.43 -90.96 -0.13 -8.21 16 7 S 2.63 46.51 4.71 -107.50 -0.51 46.00 16 8 O -0.95 -18.90 16.54 -57.60 -0.95 -19.85 16 9 O -0.94 -18.30 15.81 -57.54 -0.91 -19.21 16 10 N -0.98 -18.84 2.92 -113.53 -0.33 -19.17 16 11 C 0.14 2.71 4.26 -3.73 -0.02 2.69 16 12 C -0.13 -2.77 6.08 -26.63 -0.16 -2.93 16 13 C -0.11 -2.58 4.96 -26.69 -0.13 -2.72 16 14 C 0.04 1.10 2.25 -91.65 -0.21 0.89 16 15 H 0.03 0.91 8.14 -51.93 -0.42 0.49 16 16 C -0.51 -13.93 8.56 -34.44 -0.29 -14.23 16 17 H 0.06 1.49 7.74 -52.49 -0.41 1.08 16 18 C 0.06 1.74 5.30 -17.82 -0.09 1.64 16 19 N -0.89 -25.34 11.31 55.43 0.63 -24.72 16 20 Si 0.89 21.13 29.54 -169.99 -5.02 16.11 16 21 H -0.28 -6.64 7.11 56.52 0.40 -6.24 16 22 H -0.29 -6.78 7.11 56.52 0.40 -6.38 16 23 H -0.27 -6.37 7.11 56.52 0.40 -5.97 16 24 C 0.12 2.59 5.65 -3.70 -0.02 2.57 16 25 C -0.10 -1.03 7.19 -25.82 -0.19 -1.22 16 26 C -0.12 -1.05 7.63 -25.82 -0.20 -1.25 16 27 C -0.10 -0.98 7.21 -25.92 -0.19 -1.17 16 28 H 0.08 0.36 8.14 -51.93 -0.42 -0.06 16 29 H 0.07 0.37 8.14 -51.93 -0.42 -0.05 16 30 H 0.07 0.40 8.14 -51.93 -0.42 -0.02 16 31 H 0.07 0.69 8.13 -51.93 -0.42 0.26 16 32 H 0.07 0.64 8.13 -51.93 -0.42 0.21 16 33 H 0.08 1.56 6.03 -51.93 -0.31 1.25 16 34 H 0.06 1.08 7.28 -51.93 -0.38 0.71 16 35 H 0.05 1.00 8.14 -51.93 -0.42 0.57 16 36 H 0.06 1.23 8.14 -51.93 -0.42 0.81 16 37 H 0.03 0.78 8.14 -51.93 -0.42 0.36 16 38 H 0.09 2.48 6.04 -51.93 -0.31 2.17 16 39 H 0.26 7.10 8.31 -40.82 -0.34 6.76 16 40 H 0.08 1.57 6.86 -51.93 -0.36 1.22 16 41 H 0.05 1.05 8.14 -51.93 -0.42 0.63 16 42 H 0.11 1.23 7.46 -51.93 -0.39 0.85 16 43 H 0.09 0.93 8.09 -51.93 -0.42 0.51 16 44 H 0.10 0.79 6.84 -51.93 -0.36 0.44 16 45 H 0.08 0.54 8.14 -51.93 -0.42 0.12 16 46 H 0.09 0.80 8.09 -51.93 -0.42 0.38 16 47 H 0.10 0.90 8.10 -51.93 -0.42 0.48 16 LS Contribution 376.26 15.07 5.67 5.67 Total: -1.00 -32.72 376.26 -10.28 -43.00 By element: Atomic # 1 Polarization: 8.12 SS G_CDS: -7.56 Total: 0.56 kcal Atomic # 6 Polarization: -15.73 SS G_CDS: -0.76 Total: -16.49 kcal Atomic # 7 Polarization: -44.18 SS G_CDS: 0.30 Total: -43.89 kcal Atomic # 8 Polarization: -48.56 SS G_CDS: -2.40 Total: -50.96 kcal Atomic # 14 Polarization: 21.13 SS G_CDS: -5.02 Total: 16.11 kcal Atomic # 16 Polarization: 46.51 SS G_CDS: -0.51 Total: 46.00 kcal Total LS contribution 5.67 Total: 5.67 kcal Total: -32.72 -10.28 -43.00 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000867497056.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -88.140 kcal (2) G-P(sol) polarization free energy of solvation -32.716 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -120.856 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.280 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.996 kcal (6) G-S(sol) free energy of system = (1) + (5) -131.136 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.70 seconds