Wall clock time and date at job start Wed Apr 1 2020 03:15:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 O 1.45199 * 109.46893 * 2 1 4 4 C 1.34228 * 116.99832 * 180.02562 * 3 2 1 5 5 O 1.20817 * 120.00205 * 359.97438 * 4 3 2 6 6 C 1.50700 * 120.00053 * 179.97438 * 4 3 2 7 7 S 1.81400 * 112.85126 * 179.97438 * 6 4 3 8 8 O 1.42098 * 110.53994 * 298.70931 * 7 6 4 9 9 O 1.42096 * 110.54034 * 161.96000 * 7 6 4 10 10 N 1.65595 * 104.44862 * 50.33390 * 7 6 4 11 11 C 1.46928 * 120.63205 * 269.97699 * 10 7 6 12 12 C 1.53159 * 108.76987 * 233.63241 * 11 10 7 13 13 C 1.53046 * 109.32667 * 305.35456 * 12 11 10 14 14 C 1.53039 * 109.52798 * 61.37318 * 13 12 11 15 15 H 1.08997 * 109.49901 * 58.58690 * 14 13 12 16 16 C 1.50696 * 109.50284 * 178.69012 * 14 13 12 17 17 H 1.08000 * 120.00264 * 119.99484 * 16 14 13 18 18 C 1.37877 * 119.99530 * 300.00247 * 16 14 13 19 19 N 1.31517 * 120.00484 * 359.97438 * 18 16 14 20 20 Si 1.86807 * 119.99593 * 179.97438 * 18 16 14 21 21 H 1.48493 * 109.46936 * 89.99885 * 20 18 16 22 22 H 1.48508 * 109.46931 * 209.99795 * 20 18 16 23 23 H 1.48500 * 109.47105 * 329.99605 * 20 18 16 24 24 C 1.46931 * 120.63003 * 89.99727 * 10 7 6 25 25 C 1.53783 * 113.61362 * 311.19588 * 6 4 3 26 26 C 1.53963 * 87.02003 * 89.22911 * 25 6 4 27 27 C 1.53781 * 87.11073 * 25.36150 * 26 25 6 28 28 H 1.08999 * 109.47139 * 179.97438 * 1 2 3 29 29 H 1.08990 * 109.47378 * 300.00283 * 1 2 3 30 30 H 1.09003 * 109.46709 * 60.00540 * 1 2 3 31 31 H 1.09004 * 109.47076 * 240.00125 * 2 1 3 32 32 H 1.08994 * 109.47254 * 119.99656 * 2 1 3 33 33 H 1.08999 * 109.58766 * 353.42088 * 11 10 7 34 34 H 1.08998 * 109.58326 * 113.84164 * 11 10 7 35 35 H 1.08996 * 109.48005 * 185.40991 * 12 11 10 36 36 H 1.08994 * 109.50349 * 65.31594 * 12 11 10 37 37 H 1.09002 * 109.46115 * 301.35771 * 13 12 11 38 38 H 1.09004 * 109.45806 * 181.38656 * 13 12 11 39 39 H 0.96997 * 120.00080 * 180.02562 * 19 18 16 40 40 H 1.08998 * 109.58425 * 6.59030 * 24 10 7 41 41 H 1.08995 * 109.70793 * 246.22649 * 24 10 7 42 42 H 1.09004 * 113.61306 * 203.74317 * 25 6 4 43 43 H 1.08993 * 113.61446 * 334.65080 * 25 6 4 44 44 H 1.09000 * 113.53030 * 270.81172 * 26 25 6 45 45 H 1.08997 * 113.66473 * 139.93315 * 26 25 6 46 46 H 1.08996 * 113.61145 * 220.08845 * 27 26 25 47 47 H 1.09004 * 113.69147 * 89.20124 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0140 1.3690 0.0000 4 6 3.3447 1.5449 -0.0005 5 8 4.0807 0.5868 -0.0005 6 6 3.9207 2.9374 -0.0012 7 16 5.7347 2.9495 -0.0011 8 8 6.2374 2.3141 1.1663 9 8 6.2248 4.2178 -0.4137 10 7 6.1547 1.9281 -1.2350 11 6 6.3515 0.4936 -0.9853 12 6 7.7322 0.0871 -1.5087 13 6 7.8555 0.4915 -2.9797 14 6 7.7193 2.0106 -3.1057 15 1 8.4917 2.4958 -2.5090 16 6 7.8728 2.4113 -4.5503 17 1 7.0680 2.9227 -5.0573 18 6 9.0408 2.1248 -5.2247 19 7 10.0210 1.5023 -4.6073 20 14 9.2308 2.6209 -7.0157 21 1 9.8131 3.9847 -7.0924 22 1 10.1299 1.6593 -7.7029 23 1 7.9004 2.6128 -7.6754 24 6 6.3381 2.4392 -2.6003 25 6 3.2982 3.8611 -1.0615 26 6 2.2496 4.2400 0.0003 27 6 3.2989 3.8617 1.0591 28 1 -0.3633 -1.0276 -0.0005 29 1 -0.3633 0.5138 0.8899 30 1 -0.3633 0.5138 -0.8901 31 1 1.8934 -0.5138 -0.8900 32 1 1.8934 -0.5137 0.8900 33 1 6.2944 0.2979 0.0855 34 1 5.5813 -0.0767 -1.5045 35 1 7.8525 -0.9923 -1.4169 36 1 8.5045 0.5905 -0.9272 37 1 7.0677 0.0071 -3.5566 38 1 8.8282 0.1811 -3.3613 39 1 10.8428 1.3011 -5.0817 40 1 6.2724 3.5271 -2.5950 41 1 5.5670 2.0296 -3.2527 42 1 3.9441 4.6895 -1.3523 43 1 2.8824 3.3270 -1.9158 44 1 1.3752 3.5892 0.0001 45 1 1.9907 5.2988 0.0011 46 1 2.8836 3.3282 1.9140 47 1 3.9456 4.6895 1.3501 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000867497056.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:15:47 Heat of formation + Delta-G solvation = -151.871882 kcal Electronic energy + Delta-G solvation = -30953.095907 eV Core-core repulsion = 26842.293052 eV Total energy + Delta-G solvation = -4110.802855 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 345.149 amu Computer time = 0.76 seconds Orbital eigenvalues (eV) -42.09082 -39.48126 -39.27671 -38.42508 -37.76046 -37.19554 -35.17984 -32.76076 -32.56872 -31.84763 -28.46653 -27.08627 -27.00423 -25.16507 -24.78345 -23.38488 -22.94041 -21.40045 -21.00259 -19.80952 -19.04998 -18.69238 -18.33706 -17.99381 -17.68851 -17.20478 -16.87769 -16.53152 -15.66650 -15.46091 -15.36100 -15.18260 -14.88119 -14.64027 -14.42638 -14.30905 -13.95071 -13.78416 -13.69523 -13.65800 -13.60753 -13.36695 -13.30054 -12.96674 -12.91310 -12.79119 -12.66134 -12.59571 -12.50752 -12.13300 -11.84481 -11.75315 -11.74143 -11.63853 -11.52775 -11.42919 -11.37798 -11.03804 -10.75048 -10.41080 -9.71590 -8.05112 -6.20964 -1.00424 0.83553 1.20275 1.44688 1.45363 1.55372 1.63252 2.46045 2.60969 2.78440 2.97790 3.21506 3.26471 3.40704 3.60769 3.84470 4.03242 4.07528 4.14608 4.28677 4.36708 4.37798 4.43758 4.54278 4.56233 4.61318 4.73189 4.77906 4.79505 4.81450 4.91084 4.94058 4.95233 5.06053 5.09872 5.12480 5.30136 5.31172 5.34644 5.37888 5.55797 5.65948 5.72134 5.98026 6.15771 6.38043 6.46702 6.90893 7.47117 8.99200 Molecular weight = 345.15amu Principal moments of inertia in cm(-1) A = 0.014635 B = 0.003750 C = 0.003640 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1912.731069 B = 7465.819652 C = 7689.587499 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C 0.049 3.951 3 O -0.335 6.335 4 C 0.518 3.482 5 O -0.510 6.510 6 C -0.606 4.606 7 S 2.628 3.372 8 O -0.978 6.978 9 O -0.966 6.966 10 N -0.989 5.989 11 C 0.151 3.849 12 C -0.132 4.132 13 C -0.100 4.100 14 C 0.036 3.964 15 H -0.014 1.014 16 C -0.532 4.532 17 H 0.064 0.936 18 C 0.011 3.989 19 N -0.919 5.919 20 Si 0.959 3.041 21 H -0.279 1.279 22 H -0.286 1.286 23 H -0.262 1.262 24 C 0.136 3.864 25 C -0.102 4.102 26 C -0.106 4.106 27 C -0.103 4.103 28 H 0.098 0.902 29 H 0.073 0.927 30 H 0.070 0.930 31 H 0.069 0.931 32 H 0.072 0.928 33 H 0.085 0.915 34 H 0.074 0.926 35 H 0.078 0.922 36 H 0.035 0.965 37 H 0.039 0.961 38 H 0.060 0.940 39 H 0.260 0.740 40 H 0.078 0.922 41 H 0.071 0.929 42 H 0.114 0.886 43 H 0.100 0.900 44 H 0.109 0.891 45 H 0.108 0.892 46 H 0.106 0.894 47 H 0.112 0.888 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -23.372 0.534 10.335 25.561 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.201 4.201 2 C -0.024 4.024 3 O -0.251 6.251 4 C 0.360 3.640 5 O -0.399 6.399 6 C -0.697 4.697 7 S 2.723 3.277 8 O -0.969 6.969 9 O -0.956 6.956 10 N -0.827 5.827 11 C 0.026 3.974 12 C -0.171 4.171 13 C -0.138 4.138 14 C 0.016 3.984 15 H 0.004 0.996 16 C -0.571 4.571 17 H 0.082 0.918 18 C -0.188 4.188 19 N -0.558 5.558 20 Si 0.784 3.216 21 H -0.205 1.205 22 H -0.212 1.212 23 H -0.186 1.186 24 C 0.012 3.988 25 C -0.140 4.140 26 C -0.143 4.143 27 C -0.142 4.142 28 H 0.116 0.884 29 H 0.092 0.908 30 H 0.089 0.911 31 H 0.088 0.912 32 H 0.090 0.910 33 H 0.103 0.897 34 H 0.093 0.907 35 H 0.096 0.904 36 H 0.054 0.946 37 H 0.057 0.943 38 H 0.079 0.921 39 H 0.069 0.931 40 H 0.096 0.904 41 H 0.089 0.911 42 H 0.132 0.868 43 H 0.119 0.881 44 H 0.127 0.873 45 H 0.126 0.874 46 H 0.125 0.875 47 H 0.130 0.870 Dipole moment (debyes) X Y Z Total from point charges -22.437 0.600 10.878 24.942 hybrid contribution 0.642 -0.390 -1.103 1.334 sum -21.795 0.210 9.776 23.888 Atomic orbital electron populations 1.21816 0.89951 1.04398 1.03941 1.23442 0.97269 0.78722 1.02952 1.86449 1.21631 1.33864 1.83119 1.21405 0.82090 0.88420 0.72094 1.90818 1.60483 1.42743 1.45815 1.32033 1.24477 0.99170 1.14051 1.04381 0.77161 0.73049 0.73146 1.93500 1.77708 1.76090 1.49595 1.93577 1.77133 1.42664 1.82255 1.57400 1.83003 1.19828 1.22508 1.21270 0.96038 0.79080 1.00962 1.21985 0.96853 1.00635 0.97636 1.21372 1.01373 0.97662 0.93387 1.18901 0.91444 0.93443 0.94597 0.99611 1.21493 1.01133 1.37574 0.96854 0.91756 1.25789 0.95567 0.95044 1.02367 1.70055 1.05792 1.41901 1.38064 0.85550 0.78322 0.77746 0.79968 1.20491 1.21190 1.18573 1.21534 0.98918 0.98230 0.80132 1.22939 0.98889 0.96321 0.95859 1.22898 0.96172 1.04405 0.90869 1.22920 0.99098 0.96102 0.96051 0.88389 0.90845 0.91105 0.91219 0.90966 0.89693 0.90735 0.90389 0.94620 0.94269 0.92116 0.93138 0.90370 0.91057 0.86814 0.88132 0.87266 0.87400 0.87525 0.86990 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.26 10.29 71.98 0.74 -0.52 16 2 C 0.05 0.76 6.19 71.98 0.45 1.20 16 3 O -0.33 -6.34 8.32 -51.40 -0.43 -6.77 16 4 C 0.52 12.91 7.04 71.24 0.50 13.41 16 5 O -0.51 -15.46 11.34 22.04 0.25 -15.21 16 6 C -0.61 -14.66 1.43 -11.01 -0.02 -14.68 16 7 S 2.63 93.49 4.71 -56.49 -0.27 93.22 16 8 O -0.98 -39.96 16.54 -127.59 -2.11 -42.07 16 9 O -0.97 -38.42 15.81 -127.65 -2.02 -40.44 16 10 N -0.99 -38.66 2.92 -513.11 -1.50 -40.16 16 11 C 0.15 5.79 4.26 86.35 0.37 6.16 16 12 C -0.13 -5.60 6.08 30.66 0.19 -5.42 16 13 C -0.10 -4.91 4.96 30.62 0.15 -4.76 16 14 C 0.04 1.90 2.25 -11.46 -0.03 1.87 16 15 H -0.01 -0.87 8.14 -2.39 -0.02 -0.89 16 16 C -0.53 -29.37 8.56 25.60 0.22 -29.15 16 17 H 0.06 3.36 7.74 -2.91 -0.02 3.34 16 18 C 0.01 0.61 5.30 84.65 0.45 1.06 16 19 N -0.92 -54.42 11.31 21.45 0.24 -54.18 16 20 Si 0.96 43.73 29.54 68.60 2.03 45.75 16 21 H -0.28 -12.56 7.11 99.48 0.71 -11.86 16 22 H -0.29 -12.89 7.11 99.48 0.71 -12.19 16 23 H -0.26 -11.29 7.11 99.48 0.71 -10.58 16 24 C 0.14 5.78 5.65 86.36 0.49 6.27 16 25 C -0.10 -1.91 7.19 31.18 0.22 -1.68 16 26 C -0.11 -1.34 7.63 31.18 0.24 -1.10 16 27 C -0.10 -1.73 7.21 31.12 0.22 -1.51 16 28 H 0.10 0.55 8.14 -2.39 -0.02 0.53 16 29 H 0.07 0.56 8.14 -2.39 -0.02 0.55 16 30 H 0.07 0.60 8.14 -2.39 -0.02 0.58 16 31 H 0.07 1.15 8.13 -2.38 -0.02 1.13 16 32 H 0.07 1.12 8.13 -2.39 -0.02 1.10 16 33 H 0.08 3.24 6.03 -2.39 -0.01 3.22 16 34 H 0.07 2.64 7.28 -2.39 -0.02 2.62 16 35 H 0.08 2.89 8.14 -2.39 -0.02 2.87 16 36 H 0.03 1.63 8.14 -2.39 -0.02 1.61 16 37 H 0.04 1.84 8.14 -2.39 -0.02 1.82 16 38 H 0.06 3.38 6.04 -2.39 -0.01 3.37 16 39 H 0.26 14.64 8.31 -92.71 -0.77 13.87 16 40 H 0.08 3.25 6.86 -2.39 -0.02 3.23 16 41 H 0.07 2.75 8.14 -2.39 -0.02 2.73 16 42 H 0.11 2.21 7.46 -2.38 -0.02 2.19 16 43 H 0.10 1.73 8.09 -2.39 -0.02 1.71 16 44 H 0.11 1.22 6.84 -2.39 -0.02 1.20 16 45 H 0.11 0.89 8.14 -2.39 -0.02 0.87 16 46 H 0.11 1.50 8.09 -2.39 -0.02 1.48 16 47 H 0.11 1.69 8.10 -2.38 -0.02 1.67 16 Total: -1.00 -73.87 376.26 1.35 -72.52 By element: Atomic # 1 Polarization: 15.22 SS G_CDS: 0.96 Total: 16.18 kcal Atomic # 6 Polarization: -33.03 SS G_CDS: 4.20 Total: -28.84 kcal Atomic # 7 Polarization: -93.09 SS G_CDS: -1.26 Total: -94.34 kcal Atomic # 8 Polarization: -100.19 SS G_CDS: -4.31 Total: -104.49 kcal Atomic # 14 Polarization: 43.73 SS G_CDS: 2.03 Total: 45.75 kcal Atomic # 16 Polarization: 93.49 SS G_CDS: -0.27 Total: 93.22 kcal Total: -73.87 1.35 -72.52 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000867497056.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -79.356 kcal (2) G-P(sol) polarization free energy of solvation -73.867 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -153.223 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.351 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.515 kcal (6) G-S(sol) free energy of system = (1) + (5) -151.872 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.76 seconds