Wall clock time and date at job start Wed Apr 1 2020 03:19:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 O 1.45196 * 109.47069 * 2 1 4 4 C 1.34227 * 117.00020 * 179.97438 * 3 2 1 5 5 O 1.20825 * 120.00439 * 0.02562 * 4 3 2 6 6 C 1.50704 * 120.00344 * 180.02562 * 4 3 2 7 7 C 1.53000 * 109.47637 * 180.02562 * 6 4 3 8 8 H 1.09003 * 109.46909 * 55.39451 * 7 6 4 9 9 C 1.50697 * 109.47172 * 175.39408 * 7 6 4 10 10 H 1.08000 * 120.00163 * 245.55794 * 9 7 6 11 11 C 1.37879 * 119.99616 * 65.56494 * 9 7 6 12 12 N 1.31514 * 119.99598 * 199.10069 * 11 9 7 13 13 Si 1.86801 * 120.00336 * 19.09714 * 11 9 7 14 14 H 1.48500 * 109.46935 * 180.02562 * 13 11 9 15 15 H 1.48497 * 109.47214 * 300.00189 * 13 11 9 16 16 H 1.48495 * 109.46883 * 60.00337 * 13 11 9 17 17 O 1.45206 * 109.46938 * 295.40005 * 7 6 4 18 18 C 1.34223 * 116.99652 * 149.99997 * 17 7 6 19 19 O 1.20820 * 120.00712 * 359.97438 * 18 17 7 20 20 C 1.50707 * 119.99645 * 179.97438 * 18 17 7 21 21 N 1.46502 * 109.47002 * 179.97438 * 20 18 17 22 22 C 1.36826 * 125.06466 * 264.69367 * 21 20 18 23 23 C 1.34239 * 109.92895 * 179.81749 * 22 21 20 24 24 C 1.46484 * 106.99687 * 0.43143 * 23 22 21 25 25 C 1.39627 * 134.02818 * 179.75687 * 24 23 22 26 26 C 1.36628 * 119.76355 * 180.02562 * 25 24 23 27 27 C 1.38837 * 120.52629 * 359.97438 * 26 25 24 28 28 C 1.37747 * 120.66716 * 359.97438 * 27 26 25 29 29 C 1.37689 * 125.05928 * 84.99916 * 21 20 18 30 30 H 1.09001 * 109.47128 * 179.97438 * 1 2 3 31 31 H 1.08998 * 109.46709 * 299.99746 * 1 2 3 32 32 H 1.09007 * 109.46974 * 59.99880 * 1 2 3 33 33 H 1.09006 * 109.46940 * 240.00857 * 2 1 3 34 34 H 1.09003 * 109.47263 * 120.00509 * 2 1 3 35 35 H 1.09007 * 109.47178 * 59.99792 * 6 4 3 36 36 H 1.09002 * 109.46917 * 300.00243 * 6 4 3 37 37 H 0.97000 * 120.00228 * 354.56780 * 12 11 9 38 38 H 1.08994 * 109.47067 * 299.99654 * 20 18 17 39 39 H 1.08999 * 109.47230 * 59.99640 * 20 18 17 40 40 H 1.08004 * 125.03435 * 359.97438 * 22 21 20 41 41 H 1.08003 * 126.50208 * 180.15582 * 23 22 21 42 42 H 1.08000 * 120.12239 * 0.02562 * 25 24 23 43 43 H 1.08001 * 119.74091 * 180.02562 * 26 25 24 44 44 H 1.07998 * 119.66514 * 179.97438 * 27 26 25 45 45 H 1.07996 * 120.11051 * 179.97438 * 28 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0140 1.3689 0.0000 4 6 3.3447 1.5448 0.0005 5 8 4.0808 0.5867 0.0005 6 6 3.9208 2.9374 0.0012 7 6 5.4487 2.8574 0.0010 8 1 5.7809 2.2559 -0.8451 9 6 6.0244 4.2454 -0.1124 10 1 6.5847 4.5275 -0.9916 11 6 5.8359 5.1553 0.9062 12 7 5.9914 6.4409 0.6767 13 14 5.3594 4.5620 2.6123 14 1 5.2177 5.7285 3.5203 15 1 4.0683 3.8320 2.5398 16 1 6.4129 3.6541 3.1327 17 8 5.9014 2.2451 1.2374 18 6 7.0459 1.5458 1.1876 19 8 7.6494 1.4480 0.1455 20 6 7.5784 0.8825 2.4317 21 7 8.8289 0.1870 2.1173 22 6 8.9322 -1.1402 1.8011 23 6 10.2155 -1.4558 1.5653 24 6 10.9991 -0.2328 1.7553 25 6 12.3582 0.0734 1.6611 26 6 12.7849 1.3477 1.9072 27 6 11.8779 2.3414 2.2500 28 6 10.5327 2.0614 2.3475 29 6 10.0760 0.7704 2.1018 30 1 -0.3633 -1.0277 -0.0005 31 1 -0.3633 0.5138 0.8900 32 1 -0.3633 0.5139 -0.8900 33 1 1.8933 -0.5137 -0.8901 34 1 1.8934 -0.5139 0.8899 35 1 3.5845 3.4693 0.8912 36 1 3.5851 3.4698 -0.8888 37 1 6.3148 6.7439 -0.1861 38 1 7.7644 1.6379 3.1950 39 1 6.8468 0.1643 2.8020 40 1 8.1037 -1.8309 1.7467 41 1 10.5982 -2.4280 1.2920 42 1 13.0695 -0.6943 1.3946 43 1 13.8362 1.5843 1.8338 44 1 12.2305 3.3439 2.4420 45 1 9.8350 2.8411 2.6152 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000870620899.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:19:31 Heat of formation + Delta-G solvation = -107.410577 kcal Electronic energy + Delta-G solvation = -30518.621087 eV Core-core repulsion = 26274.302268 eV Total energy + Delta-G solvation = -4244.318819 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 345.145 amu Computer time = 0.65 seconds Orbital eigenvalues (eV) -41.22087 -40.18936 -39.31615 -36.96153 -36.45667 -35.63847 -33.29511 -32.75106 -31.88509 -30.98202 -30.26432 -28.71446 -27.12274 -26.11912 -23.26593 -22.65816 -22.00726 -21.39390 -20.94647 -20.18904 -19.80946 -17.91664 -17.39844 -17.05815 -16.93988 -16.40622 -16.33401 -15.91151 -15.59060 -15.25693 -15.08491 -14.27074 -14.01166 -13.88172 -13.68459 -13.60672 -13.24136 -13.04420 -12.89293 -12.75144 -12.55580 -12.45412 -12.30307 -12.11328 -11.68246 -11.62746 -11.51819 -11.44146 -11.34766 -10.81067 -10.73052 -10.65730 -10.39787 -10.27743 -9.97178 -9.80104 -9.42311 -9.29095 -9.11970 -8.53595 -7.97759 -7.49394 -6.79700 -4.53431 1.33721 1.81897 2.62622 2.63977 2.93177 2.96615 2.98305 3.22325 3.32018 3.44218 3.83849 4.15553 4.26116 4.81325 4.84877 4.89692 4.91256 4.95548 4.96587 5.12615 5.17572 5.23130 5.23902 5.33469 5.35782 5.59928 5.67284 5.68963 5.71454 5.83055 5.87800 5.93417 5.96049 6.00787 6.09083 6.26036 6.49083 6.60921 6.66636 6.77031 6.79611 6.94902 6.97660 7.38093 7.42016 7.44821 7.55875 8.06158 8.16169 8.47152 8.68927 9.24585 10.57172 Molecular weight = 345.15amu Principal moments of inertia in cm(-1) A = 0.011111 B = 0.003805 C = 0.003043 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2519.398710 B = 7357.794709 C = 9198.337091 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C 0.059 3.941 3 O -0.364 6.364 4 C 0.458 3.542 5 O -0.511 6.511 6 C -0.111 4.111 7 C 0.201 3.799 8 H 0.060 0.940 9 C -0.619 4.619 10 H 0.071 0.929 11 C 0.042 3.958 12 N -0.874 5.874 13 Si 1.073 2.927 14 H -0.296 1.296 15 H -0.276 1.276 16 H -0.286 1.286 17 O -0.366 6.366 18 C 0.451 3.549 19 O -0.493 6.493 20 C 0.110 3.890 21 N -0.468 5.468 22 C 0.063 3.937 23 C -0.208 4.208 24 C -0.108 4.108 25 C -0.077 4.077 26 C -0.149 4.149 27 C -0.103 4.103 28 C -0.120 4.120 29 C 0.110 3.890 30 H 0.075 0.925 31 H 0.066 0.934 32 H 0.065 0.935 33 H 0.065 0.935 34 H 0.066 0.934 35 H 0.113 0.887 36 H 0.119 0.881 37 H 0.274 0.726 38 H 0.122 0.878 39 H 0.125 0.875 40 H 0.166 0.834 41 H 0.145 0.855 42 H 0.118 0.882 43 H 0.119 0.881 44 H 0.123 0.877 45 H 0.119 0.881 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.703 -13.004 5.091 13.983 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C -0.015 4.015 3 O -0.282 6.282 4 C 0.302 3.698 5 O -0.398 6.398 6 C -0.148 4.148 7 C 0.149 3.851 8 H 0.079 0.921 9 C -0.655 4.655 10 H 0.089 0.911 11 C -0.168 4.168 12 N -0.505 5.505 13 Si 0.905 3.095 14 H -0.224 1.224 15 H -0.203 1.203 16 H -0.213 1.213 17 O -0.284 6.284 18 C 0.291 3.709 19 O -0.380 6.380 20 C -0.013 4.013 21 N -0.152 5.152 22 C -0.062 4.062 23 C -0.232 4.232 24 C -0.112 4.112 25 C -0.095 4.095 26 C -0.168 4.168 27 C -0.122 4.122 28 C -0.140 4.140 29 C 0.004 3.996 30 H 0.094 0.906 31 H 0.085 0.915 32 H 0.084 0.916 33 H 0.084 0.916 34 H 0.084 0.916 35 H 0.131 0.869 36 H 0.137 0.863 37 H 0.084 0.916 38 H 0.140 0.860 39 H 0.143 0.857 40 H 0.183 0.817 41 H 0.163 0.837 42 H 0.136 0.864 43 H 0.137 0.863 44 H 0.141 0.859 45 H 0.137 0.863 Dipole moment (debyes) X Y Z Total from point charges -1.089 -12.640 6.277 14.154 hybrid contribution 0.296 -0.593 -1.843 1.959 sum -0.793 -13.233 4.433 13.978 Atomic orbital electron populations 1.21791 0.93003 1.02548 1.03469 1.22923 0.95090 0.81296 1.02215 1.86571 1.25621 1.31495 1.84487 1.24619 0.79808 0.93883 0.71498 1.90603 1.60291 1.43416 1.45532 1.22284 0.96535 0.89133 1.06842 1.20583 0.87928 0.94018 0.82610 0.92139 1.22163 1.40531 0.95166 1.07663 0.91134 1.26083 0.93455 0.93294 1.03990 1.70871 1.37804 1.14292 1.27527 0.83599 0.77178 0.74082 0.74669 1.22396 1.20336 1.21313 1.86302 1.38315 1.60558 1.43199 1.23128 0.80690 0.76992 0.90041 1.90628 1.57552 1.57826 1.32010 1.21308 0.85677 0.98947 0.95407 1.43496 1.04317 1.07919 1.59431 1.21779 0.98590 0.84065 1.01762 1.21572 0.91908 0.97704 1.12063 1.19175 0.93108 0.93502 1.05425 1.20182 0.93192 0.96532 0.99633 1.20575 0.99286 0.93188 1.03762 1.20770 0.92023 0.99192 1.00227 1.20143 0.96243 0.93319 1.04321 1.18217 0.84000 0.94594 1.02746 0.90630 0.91520 0.91566 0.91636 0.91600 0.86910 0.86260 0.91578 0.86014 0.85705 0.81667 0.83697 0.86383 0.86343 0.85882 0.86289 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.40 10.29 37.16 0.38 -1.02 16 2 C 0.06 0.75 6.19 37.16 0.23 0.98 16 3 O -0.36 -5.98 10.22 -39.25 -0.40 -6.38 16 4 C 0.46 8.78 7.84 36.01 0.28 9.06 16 5 O -0.51 -10.78 15.16 -24.05 -0.36 -11.15 16 6 C -0.11 -2.26 5.22 -27.88 -0.15 -2.40 16 7 C 0.20 4.82 1.62 -27.88 -0.05 4.78 16 8 H 0.06 1.56 6.98 -51.93 -0.36 1.19 16 9 C -0.62 -16.80 9.31 -34.44 -0.32 -17.12 16 10 H 0.07 2.10 8.06 -52.49 -0.42 1.68 16 11 C 0.04 1.13 5.33 -17.82 -0.09 1.03 16 12 N -0.87 -25.01 13.69 55.43 0.76 -24.25 16 13 Si 1.07 24.52 24.84 -169.99 -4.22 20.30 16 14 H -0.30 -6.82 7.11 56.52 0.40 -6.42 16 15 H -0.28 -5.73 5.58 56.52 0.32 -5.42 16 16 H -0.29 -6.11 6.87 56.52 0.39 -5.72 16 17 O -0.37 -8.34 5.25 -44.54 -0.23 -8.57 16 18 C 0.45 9.86 7.99 36.01 0.29 10.15 16 19 O -0.49 -12.47 15.64 -18.75 -0.29 -12.76 16 20 C 0.11 1.83 6.59 -5.19 -0.03 1.79 16 21 N -0.47 -7.91 2.27 -115.71 -0.26 -8.18 16 22 C 0.06 0.92 11.27 -16.73 -0.19 0.73 16 23 C -0.21 -2.99 11.08 -37.67 -0.42 -3.41 16 24 C -0.11 -1.76 6.37 -105.14 -0.67 -2.43 16 25 C -0.08 -1.09 10.05 -39.65 -0.40 -1.49 16 26 C -0.15 -2.03 9.97 -39.94 -0.40 -2.43 16 27 C -0.10 -1.53 10.01 -39.54 -0.40 -1.93 16 28 C -0.12 -2.07 10.00 -39.43 -0.39 -2.46 16 29 C 0.11 1.95 6.80 -83.99 -0.57 1.38 16 30 H 0.07 0.53 8.14 -51.93 -0.42 0.11 16 31 H 0.07 0.61 8.14 -51.93 -0.42 0.18 16 32 H 0.07 0.60 8.14 -51.92 -0.42 0.18 16 33 H 0.07 0.83 8.14 -51.93 -0.42 0.41 16 34 H 0.07 0.83 8.13 -51.93 -0.42 0.41 16 35 H 0.11 2.30 4.94 -51.93 -0.26 2.05 16 36 H 0.12 2.24 8.14 -51.93 -0.42 1.82 16 37 H 0.27 7.82 8.73 -40.82 -0.36 7.46 16 38 H 0.12 1.85 8.14 -51.93 -0.42 1.43 16 39 H 0.13 1.61 8.11 -51.93 -0.42 1.19 16 40 H 0.17 1.88 8.06 -52.48 -0.42 1.46 16 41 H 0.15 1.65 8.06 -52.48 -0.42 1.23 16 42 H 0.12 1.35 8.06 -52.49 -0.42 0.93 16 43 H 0.12 1.27 8.06 -52.49 -0.42 0.84 16 44 H 0.12 1.54 8.06 -52.49 -0.42 1.12 16 45 H 0.12 2.05 8.06 -52.49 -0.42 1.63 16 LS Contribution 384.72 15.07 5.80 5.80 Total: -1.00 -33.91 384.72 -8.32 -42.23 By element: Atomic # 1 Polarization: 13.96 SS G_CDS: -6.21 Total: 7.75 kcal Atomic # 6 Polarization: -1.90 SS G_CDS: -2.89 Total: -4.79 kcal Atomic # 7 Polarization: -32.93 SS G_CDS: 0.50 Total: -32.43 kcal Atomic # 8 Polarization: -37.56 SS G_CDS: -1.29 Total: -38.86 kcal Atomic # 14 Polarization: 24.52 SS G_CDS: -4.22 Total: 20.30 kcal Total LS contribution 5.80 Total: 5.80 kcal Total: -33.91 -8.32 -42.23 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000870620899.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -65.177 kcal (2) G-P(sol) polarization free energy of solvation -33.911 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -99.087 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.323 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.234 kcal (6) G-S(sol) free energy of system = (1) + (5) -107.411 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.65 seconds