Wall clock time and date at job start Wed Apr 1 2020 03:19:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 O 1.45196 * 109.47069 * 2 1 4 4 C 1.34227 * 117.00020 * 179.97438 * 3 2 1 5 5 O 1.20825 * 120.00439 * 0.02562 * 4 3 2 6 6 C 1.50704 * 120.00344 * 180.02562 * 4 3 2 7 7 C 1.53000 * 109.47637 * 180.02562 * 6 4 3 8 8 H 1.09003 * 109.46909 * 55.39451 * 7 6 4 9 9 C 1.50697 * 109.47172 * 175.39408 * 7 6 4 10 10 H 1.08000 * 120.00163 * 245.55794 * 9 7 6 11 11 C 1.37879 * 119.99616 * 65.56494 * 9 7 6 12 12 N 1.31514 * 119.99598 * 199.10069 * 11 9 7 13 13 Si 1.86801 * 120.00336 * 19.09714 * 11 9 7 14 14 H 1.48500 * 109.46935 * 180.02562 * 13 11 9 15 15 H 1.48497 * 109.47214 * 300.00189 * 13 11 9 16 16 H 1.48495 * 109.46883 * 60.00337 * 13 11 9 17 17 O 1.45206 * 109.46938 * 295.40005 * 7 6 4 18 18 C 1.34223 * 116.99652 * 149.99997 * 17 7 6 19 19 O 1.20820 * 120.00712 * 359.97438 * 18 17 7 20 20 C 1.50707 * 119.99645 * 179.97438 * 18 17 7 21 21 N 1.46502 * 109.47002 * 179.97438 * 20 18 17 22 22 C 1.36826 * 125.06466 * 264.69367 * 21 20 18 23 23 C 1.34239 * 109.92895 * 179.81749 * 22 21 20 24 24 C 1.46484 * 106.99687 * 0.43143 * 23 22 21 25 25 C 1.39627 * 134.02818 * 179.75687 * 24 23 22 26 26 C 1.36628 * 119.76355 * 180.02562 * 25 24 23 27 27 C 1.38837 * 120.52629 * 359.97438 * 26 25 24 28 28 C 1.37747 * 120.66716 * 359.97438 * 27 26 25 29 29 C 1.37689 * 125.05928 * 84.99916 * 21 20 18 30 30 H 1.09001 * 109.47128 * 179.97438 * 1 2 3 31 31 H 1.08998 * 109.46709 * 299.99746 * 1 2 3 32 32 H 1.09007 * 109.46974 * 59.99880 * 1 2 3 33 33 H 1.09006 * 109.46940 * 240.00857 * 2 1 3 34 34 H 1.09003 * 109.47263 * 120.00509 * 2 1 3 35 35 H 1.09007 * 109.47178 * 59.99792 * 6 4 3 36 36 H 1.09002 * 109.46917 * 300.00243 * 6 4 3 37 37 H 0.97000 * 120.00228 * 354.56780 * 12 11 9 38 38 H 1.08994 * 109.47067 * 299.99654 * 20 18 17 39 39 H 1.08999 * 109.47230 * 59.99640 * 20 18 17 40 40 H 1.08004 * 125.03435 * 359.97438 * 22 21 20 41 41 H 1.08003 * 126.50208 * 180.15582 * 23 22 21 42 42 H 1.08000 * 120.12239 * 0.02562 * 25 24 23 43 43 H 1.08001 * 119.74091 * 180.02562 * 26 25 24 44 44 H 1.07998 * 119.66514 * 179.97438 * 27 26 25 45 45 H 1.07996 * 120.11051 * 179.97438 * 28 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0140 1.3689 0.0000 4 6 3.3447 1.5448 0.0005 5 8 4.0808 0.5867 0.0005 6 6 3.9208 2.9374 0.0012 7 6 5.4487 2.8574 0.0010 8 1 5.7809 2.2559 -0.8451 9 6 6.0244 4.2454 -0.1124 10 1 6.5847 4.5275 -0.9916 11 6 5.8359 5.1553 0.9062 12 7 5.9914 6.4409 0.6767 13 14 5.3594 4.5620 2.6123 14 1 5.2177 5.7285 3.5203 15 1 4.0683 3.8320 2.5398 16 1 6.4129 3.6541 3.1327 17 8 5.9014 2.2451 1.2374 18 6 7.0459 1.5458 1.1876 19 8 7.6494 1.4480 0.1455 20 6 7.5784 0.8825 2.4317 21 7 8.8289 0.1870 2.1173 22 6 8.9322 -1.1402 1.8011 23 6 10.2155 -1.4558 1.5653 24 6 10.9991 -0.2328 1.7553 25 6 12.3582 0.0734 1.6611 26 6 12.7849 1.3477 1.9072 27 6 11.8779 2.3414 2.2500 28 6 10.5327 2.0614 2.3475 29 6 10.0760 0.7704 2.1018 30 1 -0.3633 -1.0277 -0.0005 31 1 -0.3633 0.5138 0.8900 32 1 -0.3633 0.5139 -0.8900 33 1 1.8933 -0.5137 -0.8901 34 1 1.8934 -0.5139 0.8899 35 1 3.5845 3.4693 0.8912 36 1 3.5851 3.4698 -0.8888 37 1 6.3148 6.7439 -0.1861 38 1 7.7644 1.6379 3.1950 39 1 6.8468 0.1643 2.8020 40 1 8.1037 -1.8309 1.7467 41 1 10.5982 -2.4280 1.2920 42 1 13.0695 -0.6943 1.3946 43 1 13.8362 1.5843 1.8338 44 1 12.2305 3.3439 2.4420 45 1 9.8350 2.8411 2.6152 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000870620899.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:19:30 Heat of formation + Delta-G solvation = -125.507882 kcal Electronic energy + Delta-G solvation = -30519.405845 eV Core-core repulsion = 26274.302268 eV Total energy + Delta-G solvation = -4245.103577 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 345.145 amu Computer time = 0.76 seconds Orbital eigenvalues (eV) -42.44324 -41.70050 -40.97483 -38.31088 -37.81672 -37.31815 -35.29370 -34.04066 -33.27499 -32.35634 -31.47691 -29.84783 -28.52043 -27.86839 -24.59029 -23.88278 -23.40659 -22.73155 -22.32580 -21.84594 -21.07523 -19.85222 -18.99197 -18.64809 -18.31019 -17.73657 -17.60459 -17.37108 -17.18285 -16.66971 -16.33114 -15.75920 -15.35786 -15.22909 -15.06247 -14.93885 -14.80842 -14.44344 -14.32688 -14.03147 -13.90292 -13.63321 -13.57542 -13.51571 -13.16610 -12.89474 -12.69505 -12.60167 -12.54250 -12.52154 -12.47090 -12.19101 -11.79612 -11.55872 -11.53650 -11.49798 -11.16450 -11.06451 -10.65957 -10.60265 -9.15356 -8.99106 -8.65220 -6.74679 0.17979 0.62614 1.11401 1.18317 1.31710 1.41388 1.52171 1.65592 1.78792 1.83051 2.22010 2.35063 2.89213 2.98226 3.56973 3.64898 3.70100 3.81402 3.91818 3.98879 3.99728 4.08897 4.10698 4.17622 4.19627 4.24946 4.33860 4.50669 4.55947 4.67640 4.73797 4.80055 4.89425 4.91172 4.92530 5.02074 5.12831 5.13169 5.39285 5.48493 5.53403 5.64340 5.65680 5.81188 5.82244 5.85772 6.22926 6.27848 6.30063 6.70101 6.83483 7.13435 8.37344 Molecular weight = 345.15amu Principal moments of inertia in cm(-1) A = 0.011111 B = 0.003805 C = 0.003043 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2519.398710 B = 7357.794709 C = 9198.337091 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C 0.049 3.951 3 O -0.361 6.361 4 C 0.469 3.531 5 O -0.533 6.533 6 C -0.108 4.108 7 C 0.212 3.788 8 H 0.033 0.967 9 C -0.632 4.632 10 H 0.023 0.977 11 C 0.008 3.992 12 N -0.900 5.900 13 Si 1.095 2.905 14 H -0.296 1.296 15 H -0.238 1.238 16 H -0.266 1.266 17 O -0.361 6.361 18 C 0.442 3.558 19 O -0.537 6.537 20 C 0.118 3.882 21 N -0.479 5.479 22 C 0.051 3.949 23 C -0.209 4.209 24 C -0.130 4.130 25 C -0.079 4.079 26 C -0.150 4.150 27 C -0.107 4.107 28 C -0.154 4.154 29 C 0.077 3.923 30 H 0.103 0.897 31 H 0.070 0.930 32 H 0.067 0.933 33 H 0.065 0.935 34 H 0.070 0.930 35 H 0.120 0.880 36 H 0.130 0.870 37 H 0.260 0.740 38 H 0.135 0.865 39 H 0.169 0.831 40 H 0.197 0.803 41 H 0.175 0.825 42 H 0.149 0.851 43 H 0.152 0.848 44 H 0.141 0.859 45 H 0.104 0.896 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.527 -15.747 6.866 17.246 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.201 4.201 2 C -0.025 4.025 3 O -0.278 6.278 4 C 0.313 3.687 5 O -0.423 6.423 6 C -0.145 4.145 7 C 0.158 3.842 8 H 0.051 0.949 9 C -0.668 4.668 10 H 0.042 0.958 11 C -0.196 4.196 12 N -0.532 5.532 13 Si 0.919 3.081 14 H -0.224 1.224 15 H -0.163 1.163 16 H -0.191 1.191 17 O -0.279 6.279 18 C 0.285 3.715 19 O -0.426 6.426 20 C -0.006 4.006 21 N -0.164 5.164 22 C -0.072 4.072 23 C -0.233 4.233 24 C -0.135 4.135 25 C -0.097 4.097 26 C -0.169 4.169 27 C -0.126 4.126 28 C -0.174 4.174 29 C -0.028 4.028 30 H 0.122 0.878 31 H 0.089 0.911 32 H 0.086 0.914 33 H 0.084 0.916 34 H 0.089 0.911 35 H 0.138 0.862 36 H 0.148 0.852 37 H 0.069 0.931 38 H 0.153 0.847 39 H 0.186 0.814 40 H 0.214 0.786 41 H 0.192 0.808 42 H 0.166 0.834 43 H 0.170 0.830 44 H 0.159 0.841 45 H 0.122 0.878 Dipole moment (debyes) X Y Z Total from point charges -1.929 -15.406 8.037 17.483 hybrid contribution 0.644 0.202 -2.518 2.606 sum -1.285 -15.204 5.520 16.226 Atomic orbital electron populations 1.21826 0.90001 1.04491 1.03771 1.23352 0.97380 0.79219 1.02518 1.86539 1.23504 1.34006 1.83736 1.24037 0.80762 0.92698 0.71171 1.90598 1.61104 1.43838 1.46715 1.22034 0.93949 0.90755 1.07792 1.20231 0.90014 0.91497 0.82410 0.94922 1.22121 1.40796 0.97495 1.06411 0.95848 1.27365 0.92582 0.92576 1.07067 1.70982 1.39946 1.15452 1.26841 0.83409 0.79551 0.74600 0.70582 1.22419 1.16287 1.19137 1.86278 1.39016 1.60779 1.41788 1.24359 0.79602 0.76061 0.91453 1.90607 1.58433 1.59336 1.34239 1.21497 0.86601 1.00119 0.92382 1.43656 1.03922 1.08664 1.60120 1.22401 0.99908 0.83615 1.01289 1.22000 0.91694 0.98307 1.11269 1.19673 0.94034 0.94069 1.05726 1.20625 0.93025 0.97577 0.98472 1.20983 1.00706 0.92665 1.02499 1.21120 0.91479 1.00619 0.99366 1.20283 0.97258 0.93329 1.06574 1.18578 0.85083 0.95230 1.03912 0.87829 0.91115 0.91374 0.91645 0.91121 0.86242 0.85198 0.93090 0.84720 0.81394 0.78634 0.80766 0.83365 0.83009 0.84104 0.87778 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.20 10.29 71.98 0.74 -1.46 16 2 C 0.05 1.12 6.19 71.98 0.45 1.57 16 3 O -0.36 -11.07 10.22 -51.39 -0.53 -11.60 16 4 C 0.47 17.35 7.84 71.24 0.56 17.91 16 5 O -0.53 -21.95 15.16 27.03 0.41 -21.54 16 6 C -0.11 -4.36 5.22 29.85 0.16 -4.21 16 7 C 0.21 10.39 1.62 29.85 0.05 10.44 16 8 H 0.03 1.76 6.98 -2.39 -0.02 1.74 16 9 C -0.63 -36.00 9.31 25.60 0.24 -35.76 16 10 H 0.02 1.51 8.06 -2.91 -0.02 1.48 16 11 C 0.01 0.44 5.33 84.66 0.45 0.89 16 12 N -0.90 -53.46 13.69 21.45 0.29 -53.17 16 13 Si 1.10 48.20 24.84 68.60 1.70 49.91 16 14 H -0.30 -13.08 7.11 99.48 0.71 -12.38 16 15 H -0.24 -9.00 5.58 99.48 0.56 -8.44 16 16 H -0.27 -10.74 6.87 99.48 0.68 -10.06 16 17 O -0.36 -16.30 5.25 -46.28 -0.24 -16.54 16 18 C 0.44 19.37 7.99 71.24 0.57 19.94 16 19 O -0.54 -28.03 15.64 21.98 0.34 -27.68 16 20 C 0.12 3.72 6.59 85.63 0.56 4.28 16 21 N -0.48 -15.78 2.27 -519.98 -1.18 -16.96 16 22 C 0.05 1.40 11.27 83.00 0.94 2.33 16 23 C -0.21 -5.60 11.08 23.51 0.26 -5.34 16 24 C -0.13 -4.12 6.37 -20.20 -0.13 -4.25 16 25 C -0.08 -2.09 10.05 22.23 0.22 -1.86 16 26 C -0.15 -3.81 9.97 22.04 0.22 -3.59 16 27 C -0.11 -3.15 10.01 22.30 0.22 -2.93 16 28 C -0.15 -5.44 10.00 22.37 0.22 -5.22 16 29 C 0.08 2.74 6.80 39.03 0.27 3.01 16 30 H 0.10 1.05 8.14 -2.39 -0.02 1.03 16 31 H 0.07 1.05 8.14 -2.39 -0.02 1.03 16 32 H 0.07 1.03 8.14 -2.38 -0.02 1.01 16 33 H 0.07 1.52 8.14 -2.38 -0.02 1.50 16 34 H 0.07 1.59 8.13 -2.39 -0.02 1.57 16 35 H 0.12 4.66 4.94 -2.38 -0.01 4.65 16 36 H 0.13 4.89 8.14 -2.39 -0.02 4.87 16 37 H 0.26 15.72 8.73 -92.71 -0.81 14.91 16 38 H 0.14 3.90 8.14 -2.39 -0.02 3.88 16 39 H 0.17 3.78 8.11 -2.39 -0.02 3.76 16 40 H 0.20 3.89 8.06 -2.91 -0.02 3.86 16 41 H 0.18 3.44 8.06 -2.91 -0.02 3.42 16 42 H 0.15 2.92 8.06 -2.91 -0.02 2.90 16 43 H 0.15 2.77 8.06 -2.91 -0.02 2.75 16 44 H 0.14 3.46 8.06 -2.91 -0.02 3.44 16 45 H 0.10 3.81 8.06 -2.91 -0.02 3.79 16 Total: -1.00 -78.71 384.72 7.59 -71.13 By element: Atomic # 1 Polarization: 29.92 SS G_CDS: 0.79 Total: 30.71 kcal Atomic # 6 Polarization: -10.25 SS G_CDS: 6.00 Total: -4.25 kcal Atomic # 7 Polarization: -69.24 SS G_CDS: -0.89 Total: -70.12 kcal Atomic # 8 Polarization: -77.35 SS G_CDS: -0.01 Total: -77.36 kcal Atomic # 14 Polarization: 48.20 SS G_CDS: 1.70 Total: 49.91 kcal Total: -78.71 7.59 -71.13 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000870620899.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -54.381 kcal (2) G-P(sol) polarization free energy of solvation -78.714 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -133.095 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 7.587 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.127 kcal (6) G-S(sol) free energy of system = (1) + (5) -125.508 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.76 seconds