Wall clock time and date at job start Wed Apr 1 2020 03:51:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45196 * 1 3 3 C 1.34228 * 116.99980 * 2 1 4 4 O 1.20821 * 119.99848 * 359.97438 * 3 2 1 5 5 C 1.50706 * 119.99870 * 180.02562 * 3 2 1 6 6 C 1.52994 * 109.46867 * 179.97438 * 5 3 2 7 7 N 1.46500 * 109.47227 * 179.97438 * 6 5 3 8 8 C 1.35171 * 119.99708 * 270.00286 * 7 6 5 9 9 H 1.07998 * 119.99879 * 141.61051 * 8 7 6 10 10 C 1.39979 * 120.00224 * 321.60460 * 8 7 6 11 11 N 1.30775 * 119.99907 * 337.78120 * 10 8 7 12 12 Si 1.86805 * 120.00134 * 157.77517 * 10 8 7 13 13 H 1.48500 * 109.46784 * 0.02562 * 12 10 8 14 14 H 1.48496 * 109.47108 * 120.00099 * 12 10 8 15 15 H 1.48499 * 109.47003 * 240.00387 * 12 10 8 16 16 C 1.34773 * 120.00127 * 89.99849 * 7 6 5 17 17 O 1.21574 * 119.99733 * 5.94465 * 16 7 6 18 18 C 1.48395 * 120.00254 * 185.94147 * 16 7 6 19 19 O 1.21532 * 119.99452 * 84.04524 * 18 16 7 20 20 C 1.47463 * 120.00202 * 264.04835 * 18 16 7 21 21 C 1.39880 * 120.21430 * 5.48884 * 20 18 16 22 22 C 1.37706 * 119.76062 * 180.02562 * 21 20 18 23 23 C 1.38749 * 120.44375 * 359.97045 * 22 21 20 24 24 C 1.38465 * 120.12110 * 0.03237 * 23 22 21 25 25 C 1.38131 * 120.02045 * 359.97438 * 24 23 22 26 26 C 1.51406 * 109.72810 * 179.97438 * 24 23 22 27 27 C 1.54332 * 105.17712 * 342.77280 * 26 24 23 28 28 C 1.51742 * 130.11464 * 179.83815 * 23 22 21 29 29 H 1.09008 * 109.47490 * 180.02562 * 1 2 3 30 30 H 1.09002 * 109.47189 * 299.99731 * 1 2 3 31 31 H 1.08991 * 109.47506 * 59.99948 * 1 2 3 32 32 H 1.08993 * 109.46977 * 60.00062 * 5 3 2 33 33 H 1.09001 * 109.46801 * 299.99983 * 5 3 2 34 34 H 1.09002 * 109.47343 * 60.00026 * 6 5 3 35 35 H 1.09003 * 109.47698 * 300.00131 * 6 5 3 36 36 H 0.96999 * 119.99863 * 185.09204 * 11 10 8 37 37 H 1.08002 * 120.11711 * 0.03905 * 21 20 18 38 38 H 1.08005 * 119.78058 * 179.97438 * 22 21 20 39 39 H 1.08011 * 119.96142 * 180.02562 * 25 24 23 40 40 H 1.09004 * 110.30048 * 223.84799 * 26 24 23 41 41 H 1.09001 * 110.38552 * 101.74722 * 26 24 23 42 42 H 1.08997 * 110.81204 * 144.66898 * 27 26 24 43 43 H 1.09003 * 110.81509 * 268.00166 * 27 26 24 44 44 H 1.08994 * 110.25320 * 78.32569 * 28 23 22 45 45 H 1.09008 * 110.48813 * 316.08912 * 28 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4520 0.0000 0.0000 3 6 2.0613 1.1960 0.0000 4 8 1.4033 2.2093 -0.0005 5 6 3.5663 1.2748 -0.0006 6 6 4.0001 2.7420 -0.0011 7 7 5.4631 2.8187 -0.0011 8 6 6.1379 2.8545 1.1696 9 1 7.0719 2.3219 1.2710 10 6 5.6262 3.5819 2.2505 11 7 4.7739 4.5515 2.0413 12 14 6.1605 3.1677 3.9919 13 1 7.1249 2.0388 3.9584 14 1 6.8090 4.3540 4.6062 15 1 4.9730 2.7811 4.7954 16 6 6.1361 2.8536 -1.1682 17 8 5.5283 2.9305 -2.2183 18 6 7.6190 2.7981 -1.1716 19 8 8.1870 1.7251 -1.1177 20 6 8.4033 4.0450 -1.2402 21 6 7.7593 5.2856 -1.1868 22 6 8.5009 6.4441 -1.2522 23 6 9.8822 6.3889 -1.3702 24 6 10.5267 5.1645 -1.4238 25 6 9.7947 3.9949 -1.3593 26 6 12.0201 5.3782 -1.5523 27 6 12.1806 6.8430 -2.0109 28 6 10.9012 7.5095 -1.4626 29 1 -0.3634 -1.0277 0.0005 30 1 -0.3634 0.5138 0.8900 31 1 -0.3634 0.5138 -0.8899 32 1 3.9556 0.7809 -0.8908 33 1 3.9564 0.7805 0.8892 34 1 3.6107 3.2364 0.8889 35 1 3.6100 3.2360 -0.8910 36 1 4.4759 5.1034 2.7813 37 1 6.6844 5.3346 -1.0942 38 1 8.0039 7.4021 -1.2113 39 1 10.2984 3.0403 -1.4008 40 1 12.4362 4.7006 -2.2979 41 1 12.5094 5.2272 -0.5901 42 1 13.0706 7.2916 -1.5695 43 1 12.2155 6.9068 -3.0985 44 1 11.0876 7.9322 -0.4754 45 1 10.5555 8.2840 -2.1473 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000871341760.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:51:48 Heat of formation + Delta-G solvation = -126.991861 kcal Electronic energy + Delta-G solvation = -30073.543457 eV Core-core repulsion = 25828.375530 eV Total energy + Delta-G solvation = -4245.167927 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 345.145 amu Computer time = 0.78 seconds Orbital eigenvalues (eV) -40.25960 -40.04972 -39.17514 -37.51231 -36.20723 -35.30989 -35.17689 -32.21413 -31.26155 -30.96853 -29.36073 -27.62686 -27.30976 -25.44572 -25.12311 -23.16659 -21.89382 -20.99018 -20.74842 -20.08794 -19.03127 -17.54484 -17.15513 -16.33391 -16.32378 -16.06196 -16.01100 -15.56829 -15.41834 -14.91123 -14.73194 -14.54316 -13.87699 -13.71805 -13.35922 -13.30241 -13.14085 -13.04303 -12.89276 -12.74997 -12.34100 -12.24780 -12.05101 -11.87531 -11.75762 -11.39252 -11.36544 -11.23885 -11.18557 -10.95128 -10.82507 -10.66975 -10.58275 -10.52955 -10.33806 -10.21054 -10.07983 -9.31311 -8.57657 -8.42581 -8.28745 -7.82598 -6.61721 -4.27391 1.00771 1.67915 2.61049 2.73927 2.97689 3.00338 3.13373 3.18076 3.44909 3.93033 4.08381 4.17105 4.50356 4.56000 4.71496 4.91885 5.08732 5.16761 5.21642 5.23647 5.28192 5.29600 5.36348 5.59681 5.63197 5.64384 5.65939 5.71335 5.74546 5.76674 5.85211 5.93396 6.00887 6.09039 6.19081 6.20493 6.34324 6.63454 6.66371 6.71023 6.74724 6.77254 7.12754 7.18203 7.29618 7.58580 7.90016 8.11420 8.14395 8.77951 9.12074 9.60555 10.39744 Molecular weight = 345.15amu Principal moments of inertia in cm(-1) A = 0.013905 B = 0.003124 C = 0.002844 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2013.153661 B = 8959.603971 C = 9842.154615 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.035 3.965 2 O -0.365 6.365 3 C 0.468 3.532 4 O -0.505 6.505 5 C -0.126 4.126 6 C 0.122 3.878 7 N -0.402 5.402 8 C -0.374 4.374 9 H 0.093 0.907 10 C 0.061 3.939 11 N -0.836 5.836 12 Si 0.910 3.090 13 H -0.263 1.263 14 H -0.277 1.277 15 H -0.275 1.275 16 C 0.437 3.563 17 O -0.582 6.582 18 C 0.428 3.572 19 O -0.449 6.449 20 C -0.146 4.146 21 C -0.039 4.039 22 C -0.122 4.122 23 C -0.073 4.073 24 C -0.123 4.123 25 C -0.049 4.049 26 C -0.078 4.078 27 C -0.120 4.120 28 C -0.084 4.084 29 H 0.096 0.904 30 H 0.060 0.940 31 H 0.060 0.940 32 H 0.099 0.901 33 H 0.108 0.892 34 H 0.117 0.883 35 H 0.073 0.927 36 H 0.277 0.723 37 H 0.139 0.861 38 H 0.124 0.876 39 H 0.128 0.872 40 H 0.073 0.927 41 H 0.078 0.922 42 H 0.074 0.926 43 H 0.071 0.929 44 H 0.081 0.919 45 H 0.075 0.925 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.827 1.822 -2.261 6.511 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.059 4.059 2 O -0.282 6.282 3 C 0.310 3.690 4 O -0.392 6.392 5 C -0.165 4.165 6 C -0.002 4.002 7 N -0.119 5.119 8 C -0.501 4.501 9 H 0.111 0.889 10 C -0.150 4.150 11 N -0.469 5.469 12 Si 0.735 3.265 13 H -0.187 1.187 14 H -0.203 1.203 15 H -0.201 1.201 16 C 0.224 3.776 17 O -0.468 6.468 18 C 0.303 3.697 19 O -0.323 6.323 20 C -0.148 4.148 21 C -0.057 4.057 22 C -0.140 4.140 23 C -0.073 4.073 24 C -0.123 4.123 25 C -0.067 4.067 26 C -0.115 4.115 27 C -0.158 4.158 28 C -0.120 4.120 29 H 0.114 0.886 30 H 0.079 0.921 31 H 0.079 0.921 32 H 0.117 0.883 33 H 0.126 0.874 34 H 0.135 0.865 35 H 0.092 0.908 36 H 0.088 0.912 37 H 0.157 0.843 38 H 0.142 0.858 39 H 0.146 0.854 40 H 0.092 0.908 41 H 0.097 0.903 42 H 0.093 0.907 43 H 0.090 0.910 44 H 0.099 0.901 45 H 0.094 0.906 Dipole moment (debyes) X Y Z Total from point charges 5.416 1.697 -2.605 6.245 hybrid contribution -0.169 -0.114 1.113 1.132 sum 5.247 1.583 -1.492 5.680 Atomic orbital electron populations 1.23178 0.77251 1.03101 1.02361 1.86538 1.22820 1.34275 1.84593 1.23978 0.92259 0.80951 0.71764 1.90651 1.67249 1.36205 1.45090 1.21864 0.86129 1.02868 1.05628 1.21292 0.81586 0.91511 1.05787 1.42815 1.04734 1.59982 1.04347 1.19299 1.08736 1.33420 0.88690 0.88932 1.25498 0.95621 0.93344 1.00538 1.69590 1.29751 1.14044 1.33557 0.86133 0.79106 0.79314 0.81936 1.18675 1.20281 1.20078 1.20352 0.88513 0.83224 0.85516 1.90711 1.68483 1.55828 1.31758 1.22171 0.90179 0.88038 0.69326 1.90538 1.73481 1.31992 1.36287 1.20185 0.93689 0.94549 1.06377 1.21435 1.00914 0.90893 0.92477 1.20556 0.92326 0.98557 1.02606 1.20898 0.93682 0.95358 0.97341 1.20394 0.95757 0.93027 1.03085 1.20747 0.92309 0.97897 0.95790 1.20996 0.91797 0.96889 1.01807 1.22283 0.97436 0.94998 1.01044 1.21151 0.93030 0.96110 1.01754 0.88564 0.92136 0.92127 0.88299 0.87380 0.86542 0.90844 0.91191 0.84322 0.85782 0.85364 0.90833 0.90348 0.90708 0.91015 0.90057 0.90598 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 0.43 10.56 101.05 1.07 1.49 16 2 O -0.37 -5.90 10.56 -39.25 -0.41 -6.32 16 3 C 0.47 8.83 7.96 36.01 0.29 9.12 16 4 O -0.51 -10.72 15.73 -18.75 -0.29 -11.01 16 5 C -0.13 -2.48 6.14 -27.88 -0.17 -2.65 16 6 C 0.12 2.82 4.33 -4.04 -0.02 2.81 16 7 N -0.40 -9.78 2.47 -115.88 -0.29 -10.07 16 8 C -0.37 -9.17 8.62 -15.43 -0.13 -9.30 16 9 H 0.09 2.32 7.33 -52.49 -0.38 1.94 16 10 C 0.06 1.46 4.92 -17.35 -0.09 1.37 16 11 N -0.84 -20.70 11.54 55.55 0.64 -20.06 16 12 Si 0.91 18.72 29.62 -169.99 -5.03 13.68 16 13 H -0.26 -5.40 7.11 56.52 0.40 -5.00 16 14 H -0.28 -5.69 7.11 56.52 0.40 -5.28 16 15 H -0.28 -5.63 7.11 56.52 0.40 -5.23 16 16 C 0.44 10.75 6.01 -12.08 -0.07 10.68 16 17 O -0.58 -15.27 16.66 5.30 0.09 -15.19 16 18 C 0.43 9.79 5.32 -31.64 -0.17 9.62 16 19 O -0.45 -10.57 17.12 5.34 0.09 -10.48 16 20 C -0.15 -2.93 5.88 -104.97 -0.62 -3.55 16 21 C -0.04 -0.74 9.46 -39.16 -0.37 -1.12 16 22 C -0.12 -1.95 10.02 -39.59 -0.40 -2.34 16 23 C -0.07 -1.04 6.15 -103.84 -0.64 -1.68 16 24 C -0.12 -1.80 6.12 -104.23 -0.64 -2.44 16 25 C -0.05 -0.85 9.60 -39.06 -0.37 -1.22 16 26 C -0.08 -0.84 6.77 -26.84 -0.18 -1.02 16 27 C -0.12 -1.08 7.06 -25.33 -0.18 -1.26 16 28 C -0.08 -0.87 6.80 -26.67 -0.18 -1.05 16 29 H 0.10 0.84 8.14 -51.92 -0.42 0.42 16 30 H 0.06 0.73 8.13 -51.93 -0.42 0.30 16 31 H 0.06 0.72 8.13 -51.93 -0.42 0.30 16 32 H 0.10 1.91 8.14 -51.93 -0.42 1.48 16 33 H 0.11 2.02 8.14 -51.93 -0.42 1.59 16 34 H 0.12 2.89 5.54 -51.93 -0.29 2.60 16 35 H 0.07 1.80 7.31 -51.93 -0.38 1.42 16 36 H 0.28 6.45 8.30 -40.82 -0.34 6.12 16 37 H 0.14 2.90 7.16 -52.49 -0.38 2.52 16 38 H 0.12 1.69 8.06 -52.48 -0.42 1.27 16 39 H 0.13 2.10 7.66 -52.48 -0.40 1.69 16 40 H 0.07 0.72 8.14 -51.93 -0.42 0.30 16 41 H 0.08 0.78 8.14 -51.93 -0.42 0.36 16 42 H 0.07 0.53 8.14 -51.93 -0.42 0.11 16 43 H 0.07 0.60 8.14 -51.93 -0.42 0.18 16 44 H 0.08 0.78 8.14 -51.93 -0.42 0.36 16 45 H 0.08 0.69 8.14 -51.92 -0.42 0.27 16 LS Contribution 387.62 15.07 5.84 5.84 Total: -1.00 -30.15 387.62 -8.28 -38.43 By element: Atomic # 1 Polarization: 13.75 SS G_CDS: -6.04 Total: 7.72 kcal Atomic # 6 Polarization: 10.33 SS G_CDS: -2.87 Total: 7.46 kcal Atomic # 7 Polarization: -30.49 SS G_CDS: 0.36 Total: -30.13 kcal Atomic # 8 Polarization: -42.46 SS G_CDS: -0.53 Total: -42.99 kcal Atomic # 14 Polarization: 18.72 SS G_CDS: -5.03 Total: 13.68 kcal Total LS contribution 5.84 Total: 5.84 kcal Total: -30.15 -8.28 -38.43 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000871341760.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -88.564 kcal (2) G-P(sol) polarization free energy of solvation -30.150 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -118.715 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.277 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.427 kcal (6) G-S(sol) free energy of system = (1) + (5) -126.992 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.78 seconds