Wall clock time and date at job start Wed Apr 1 2020 03:51:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45196 * 1 3 3 C 1.34228 * 116.99980 * 2 1 4 4 O 1.20821 * 119.99848 * 359.97438 * 3 2 1 5 5 C 1.50706 * 119.99870 * 180.02562 * 3 2 1 6 6 C 1.52994 * 109.46867 * 179.97438 * 5 3 2 7 7 N 1.46500 * 109.47227 * 179.97438 * 6 5 3 8 8 C 1.35171 * 119.99708 * 270.00286 * 7 6 5 9 9 H 1.07998 * 119.99879 * 141.61051 * 8 7 6 10 10 C 1.39979 * 120.00224 * 321.60460 * 8 7 6 11 11 N 1.30775 * 119.99907 * 337.78120 * 10 8 7 12 12 Si 1.86805 * 120.00134 * 157.77517 * 10 8 7 13 13 H 1.48500 * 109.46784 * 0.02562 * 12 10 8 14 14 H 1.48496 * 109.47108 * 120.00099 * 12 10 8 15 15 H 1.48499 * 109.47003 * 240.00387 * 12 10 8 16 16 C 1.34773 * 120.00127 * 89.99849 * 7 6 5 17 17 O 1.21574 * 119.99733 * 5.94465 * 16 7 6 18 18 C 1.48395 * 120.00254 * 185.94147 * 16 7 6 19 19 O 1.21532 * 119.99452 * 84.04524 * 18 16 7 20 20 C 1.47463 * 120.00202 * 264.04835 * 18 16 7 21 21 C 1.39880 * 120.21430 * 5.48884 * 20 18 16 22 22 C 1.37706 * 119.76062 * 180.02562 * 21 20 18 23 23 C 1.38749 * 120.44375 * 359.97045 * 22 21 20 24 24 C 1.38465 * 120.12110 * 0.03237 * 23 22 21 25 25 C 1.38131 * 120.02045 * 359.97438 * 24 23 22 26 26 C 1.51406 * 109.72810 * 179.97438 * 24 23 22 27 27 C 1.54332 * 105.17712 * 342.77280 * 26 24 23 28 28 C 1.51742 * 130.11464 * 179.83815 * 23 22 21 29 29 H 1.09008 * 109.47490 * 180.02562 * 1 2 3 30 30 H 1.09002 * 109.47189 * 299.99731 * 1 2 3 31 31 H 1.08991 * 109.47506 * 59.99948 * 1 2 3 32 32 H 1.08993 * 109.46977 * 60.00062 * 5 3 2 33 33 H 1.09001 * 109.46801 * 299.99983 * 5 3 2 34 34 H 1.09002 * 109.47343 * 60.00026 * 6 5 3 35 35 H 1.09003 * 109.47698 * 300.00131 * 6 5 3 36 36 H 0.96999 * 119.99863 * 185.09204 * 11 10 8 37 37 H 1.08002 * 120.11711 * 0.03905 * 21 20 18 38 38 H 1.08005 * 119.78058 * 179.97438 * 22 21 20 39 39 H 1.08011 * 119.96142 * 180.02562 * 25 24 23 40 40 H 1.09004 * 110.30048 * 223.84799 * 26 24 23 41 41 H 1.09001 * 110.38552 * 101.74722 * 26 24 23 42 42 H 1.08997 * 110.81204 * 144.66898 * 27 26 24 43 43 H 1.09003 * 110.81509 * 268.00166 * 27 26 24 44 44 H 1.08994 * 110.25320 * 78.32569 * 28 23 22 45 45 H 1.09008 * 110.48813 * 316.08912 * 28 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4520 0.0000 0.0000 3 6 2.0613 1.1960 0.0000 4 8 1.4033 2.2093 -0.0005 5 6 3.5663 1.2748 -0.0006 6 6 4.0001 2.7420 -0.0011 7 7 5.4631 2.8187 -0.0011 8 6 6.1379 2.8545 1.1696 9 1 7.0719 2.3219 1.2710 10 6 5.6262 3.5819 2.2505 11 7 4.7739 4.5515 2.0413 12 14 6.1605 3.1677 3.9919 13 1 7.1249 2.0388 3.9584 14 1 6.8090 4.3540 4.6062 15 1 4.9730 2.7811 4.7954 16 6 6.1361 2.8536 -1.1682 17 8 5.5283 2.9305 -2.2183 18 6 7.6190 2.7981 -1.1716 19 8 8.1870 1.7251 -1.1177 20 6 8.4033 4.0450 -1.2402 21 6 7.7593 5.2856 -1.1868 22 6 8.5009 6.4441 -1.2522 23 6 9.8822 6.3889 -1.3702 24 6 10.5267 5.1645 -1.4238 25 6 9.7947 3.9949 -1.3593 26 6 12.0201 5.3782 -1.5523 27 6 12.1806 6.8430 -2.0109 28 6 10.9012 7.5095 -1.4626 29 1 -0.3634 -1.0277 0.0005 30 1 -0.3634 0.5138 0.8900 31 1 -0.3634 0.5138 -0.8899 32 1 3.9556 0.7809 -0.8908 33 1 3.9564 0.7805 0.8892 34 1 3.6107 3.2364 0.8889 35 1 3.6100 3.2360 -0.8910 36 1 4.4759 5.1034 2.7813 37 1 6.6844 5.3346 -1.0942 38 1 8.0039 7.4021 -1.2113 39 1 10.2984 3.0403 -1.4008 40 1 12.4362 4.7006 -2.2979 41 1 12.5094 5.2272 -0.5901 42 1 13.0706 7.2916 -1.5695 43 1 12.2155 6.9068 -3.0985 44 1 11.0876 7.9322 -0.4754 45 1 10.5555 8.2840 -2.1473 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000871341760.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:51:47 Heat of formation + Delta-G solvation = -142.383253 kcal Electronic energy + Delta-G solvation = -30074.210878 eV Core-core repulsion = 25828.375530 eV Total energy + Delta-G solvation = -4245.835348 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 345.145 amu Computer time = 0.74 seconds Orbital eigenvalues (eV) -41.85145 -41.49760 -40.65258 -39.28668 -37.70531 -37.10145 -36.45751 -34.08862 -32.73582 -32.50099 -30.60634 -28.84504 -28.34604 -27.23293 -26.77944 -24.69872 -23.19846 -22.47176 -21.68563 -21.67256 -20.83208 -19.17983 -18.72558 -18.03333 -17.88233 -17.59631 -17.54498 -16.95582 -16.54791 -16.45194 -16.30994 -15.92066 -15.43517 -15.30122 -15.06770 -14.85803 -14.71288 -14.35484 -14.17470 -13.86746 -13.74099 -13.67919 -13.48789 -13.29835 -13.01123 -12.92932 -12.86413 -12.77377 -12.49861 -12.35286 -12.11298 -12.03633 -12.00090 -11.83461 -11.82490 -11.66226 -11.64025 -11.17919 -10.30881 -9.89335 -9.76514 -9.53274 -8.49432 -6.23287 -0.47740 0.36948 1.07516 1.14836 1.25639 1.43280 1.51787 1.55282 1.69352 2.21594 2.42332 2.72944 2.85433 3.38278 3.57253 3.59761 3.76555 3.92430 3.98003 4.06022 4.17138 4.21191 4.24660 4.29285 4.30194 4.30864 4.40645 4.50874 4.66207 4.66870 4.73743 4.81816 4.90787 4.98715 5.03932 5.12581 5.16058 5.21391 5.27515 5.33175 5.33747 5.35708 5.43823 5.53164 5.67370 5.90523 6.13787 6.20920 6.64369 6.84871 7.18051 7.67935 8.52980 Molecular weight = 345.15amu Principal moments of inertia in cm(-1) A = 0.013905 B = 0.003124 C = 0.002844 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2013.153661 B = 8959.603971 C = 9842.154615 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.026 3.974 2 O -0.362 6.362 3 C 0.477 3.523 4 O -0.533 6.533 5 C -0.119 4.119 6 C 0.127 3.873 7 N -0.403 5.403 8 C -0.388 4.388 9 H 0.085 0.915 10 C 0.031 3.969 11 N -0.861 5.861 12 Si 0.974 3.026 13 H -0.261 1.261 14 H -0.271 1.271 15 H -0.268 1.268 16 C 0.423 3.577 17 O -0.612 6.612 18 C 0.426 3.574 19 O -0.469 6.469 20 C -0.176 4.176 21 C -0.059 4.059 22 C -0.125 4.125 23 C -0.063 4.063 24 C -0.122 4.122 25 C -0.055 4.055 26 C -0.079 4.079 27 C -0.112 4.112 28 C -0.083 4.083 29 H 0.138 0.862 30 H 0.062 0.938 31 H 0.061 0.939 32 H 0.101 0.899 33 H 0.121 0.879 34 H 0.102 0.898 35 H 0.050 0.950 36 H 0.283 0.717 37 H 0.106 0.894 38 H 0.145 0.855 39 H 0.132 0.868 40 H 0.085 0.915 41 H 0.092 0.908 42 H 0.103 0.897 43 H 0.079 0.921 44 H 0.098 0.902 45 H 0.094 0.906 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.053 2.695 -1.245 8.583 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.067 4.067 2 O -0.278 6.278 3 C 0.321 3.679 4 O -0.423 6.423 5 C -0.158 4.158 6 C 0.003 3.997 7 N -0.119 5.119 8 C -0.516 4.516 9 H 0.102 0.898 10 C -0.179 4.179 11 N -0.494 5.494 12 Si 0.796 3.204 13 H -0.185 1.185 14 H -0.196 1.196 15 H -0.193 1.193 16 C 0.211 3.789 17 O -0.500 6.500 18 C 0.303 3.697 19 O -0.345 6.345 20 C -0.177 4.177 21 C -0.078 4.078 22 C -0.143 4.143 23 C -0.064 4.064 24 C -0.122 4.122 25 C -0.073 4.073 26 C -0.116 4.116 27 C -0.149 4.149 28 C -0.119 4.119 29 H 0.156 0.844 30 H 0.081 0.919 31 H 0.080 0.920 32 H 0.119 0.881 33 H 0.139 0.861 34 H 0.120 0.880 35 H 0.068 0.932 36 H 0.094 0.906 37 H 0.125 0.875 38 H 0.163 0.837 39 H 0.150 0.850 40 H 0.104 0.896 41 H 0.111 0.889 42 H 0.122 0.878 43 H 0.098 0.902 44 H 0.116 0.884 45 H 0.112 0.888 Dipole moment (debyes) X Y Z Total from point charges 7.629 2.557 -1.586 8.201 hybrid contribution -0.893 -0.315 0.770 1.221 sum 6.736 2.242 -0.816 7.146 Atomic orbital electron populations 1.23604 0.74560 1.05948 1.02570 1.86506 1.25312 1.32210 1.83796 1.23614 0.91742 0.81404 0.71180 1.90641 1.67706 1.37335 1.46615 1.21648 0.87468 1.00290 1.06348 1.21127 0.81098 0.93696 1.03740 1.42976 1.05164 1.59293 1.04442 1.19348 1.09021 1.34138 0.89044 0.89758 1.26243 0.95343 0.92621 1.03655 1.69668 1.30285 1.14558 1.34893 0.85183 0.78899 0.79138 0.77202 1.18514 1.19590 1.19296 1.20838 0.89671 0.83078 0.85283 1.90657 1.69383 1.57415 1.32578 1.22255 0.89436 0.89190 0.68807 1.90496 1.73420 1.32692 1.37883 1.20030 0.94835 0.93199 1.09653 1.21265 0.99679 0.92163 0.94681 1.20772 0.93456 0.98098 1.01972 1.21484 0.93427 0.97168 0.94281 1.20936 0.98298 0.92028 1.00916 1.20857 0.91162 0.99411 0.95917 1.21164 0.88484 0.98777 1.03129 1.22335 0.97674 0.93153 1.01770 1.21326 0.92206 0.95062 1.03334 0.84395 0.91935 0.92024 0.88052 0.86135 0.88048 0.93179 0.90628 0.87541 0.83680 0.85028 0.89609 0.88947 0.87838 0.90194 0.88388 0.88766 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.59 10.56 113.37 1.20 1.79 16 2 O -0.36 -11.40 10.56 -51.40 -0.54 -11.95 16 3 C 0.48 18.31 7.96 71.24 0.57 18.88 16 4 O -0.53 -23.28 15.73 21.98 0.35 -22.93 16 5 C -0.12 -4.86 6.14 29.85 0.18 -4.68 16 6 C 0.13 6.24 4.33 86.38 0.37 6.61 16 7 N -0.40 -20.81 2.47 -638.79 -1.58 -22.39 16 8 C -0.39 -19.83 8.62 84.60 0.73 -19.10 16 9 H 0.08 4.41 7.33 -2.91 -0.02 4.39 16 10 C 0.03 1.48 4.92 85.27 0.42 1.90 16 11 N -0.86 -43.79 11.54 21.83 0.25 -43.54 16 12 Si 0.97 38.32 29.62 68.60 2.03 40.35 16 13 H -0.26 -10.18 7.11 99.48 0.71 -9.47 16 14 H -0.27 -10.36 7.11 99.48 0.71 -9.65 16 15 H -0.27 -10.22 7.11 99.48 0.71 -9.51 16 16 C 0.42 22.36 6.01 86.95 0.52 22.88 16 17 O -0.61 -34.58 16.66 -3.95 -0.07 -34.64 16 18 C 0.43 20.78 5.32 27.41 0.15 20.92 16 19 O -0.47 -23.31 17.12 -3.82 -0.07 -23.38 16 20 C -0.18 -7.41 5.88 -20.09 -0.12 -7.53 16 21 C -0.06 -2.40 9.46 22.54 0.21 -2.19 16 22 C -0.13 -3.95 10.02 22.27 0.22 -3.73 16 23 C -0.06 -1.67 6.15 -19.35 -0.12 -1.79 16 24 C -0.12 -3.35 6.12 -19.61 -0.12 -3.47 16 25 C -0.06 -1.93 9.60 22.61 0.22 -1.71 16 26 C -0.08 -1.41 6.77 30.52 0.21 -1.20 16 27 C -0.11 -1.45 7.06 31.50 0.22 -1.23 16 28 C -0.08 -1.35 6.80 30.63 0.21 -1.15 16 29 H 0.14 1.99 8.14 -2.38 -0.02 1.98 16 30 H 0.06 1.42 8.13 -2.39 -0.02 1.40 16 31 H 0.06 1.41 8.13 -2.39 -0.02 1.39 16 32 H 0.10 4.08 8.14 -2.39 -0.02 4.06 16 33 H 0.12 4.59 8.14 -2.39 -0.02 4.57 16 34 H 0.10 5.30 5.54 -2.39 -0.01 5.29 16 35 H 0.05 2.65 7.31 -2.39 -0.02 2.63 16 36 H 0.28 13.37 8.30 -92.71 -0.77 12.60 16 37 H 0.11 4.91 7.16 -2.91 -0.02 4.89 16 38 H 0.15 3.84 8.06 -2.91 -0.02 3.82 16 39 H 0.13 4.38 7.66 -2.91 -0.02 4.36 16 40 H 0.09 1.37 8.14 -2.39 -0.02 1.35 16 41 H 0.09 1.46 8.14 -2.39 -0.02 1.44 16 42 H 0.10 0.84 8.14 -2.39 -0.02 0.83 16 43 H 0.08 0.95 8.14 -2.39 -0.02 0.93 16 44 H 0.10 1.39 8.14 -2.39 -0.02 1.37 16 45 H 0.09 1.28 8.14 -2.38 -0.02 1.26 16 Total: -1.00 -69.82 387.62 6.47 -63.36 By element: Atomic # 1 Polarization: 28.89 SS G_CDS: 1.02 Total: 29.91 kcal Atomic # 6 Polarization: 20.14 SS G_CDS: 5.07 Total: 25.22 kcal Atomic # 7 Polarization: -64.60 SS G_CDS: -1.32 Total: -65.93 kcal Atomic # 8 Polarization: -92.58 SS G_CDS: -0.33 Total: -92.90 kcal Atomic # 14 Polarization: 38.32 SS G_CDS: 2.03 Total: 40.35 kcal Total: -69.82 6.47 -63.36 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000871341760.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -79.028 kcal (2) G-P(sol) polarization free energy of solvation -69.825 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -148.852 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.469 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.355 kcal (6) G-S(sol) free energy of system = (1) + (5) -142.383 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.74 seconds