Wall clock time and date at job start Wed Apr 1 2020 03:51:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45197 * 1 3 3 C 1.34227 * 116.99827 * 2 1 4 4 O 1.20831 * 120.00175 * 359.97438 * 3 2 1 5 5 C 1.50702 * 120.00179 * 179.97438 * 3 2 1 6 6 C 1.53002 * 109.47047 * 180.02562 * 5 3 2 7 7 N 1.46497 * 109.46953 * 180.02562 * 6 5 3 8 8 C 1.37097 * 119.99987 * 264.06038 * 7 6 5 9 9 H 1.08004 * 120.00022 * 145.06287 * 8 7 6 10 10 C 1.38944 * 120.00284 * 325.06884 * 8 7 6 11 11 N 1.31415 * 120.00413 * 157.75252 * 10 8 7 12 12 Si 1.86808 * 119.99784 * 337.75307 * 10 8 7 13 13 H 1.48505 * 109.46820 * 95.29080 * 12 10 8 14 14 H 1.48497 * 109.47178 * 215.29060 * 12 10 8 15 15 H 1.48497 * 109.46961 * 335.29451 * 12 10 8 16 16 C 1.34777 * 120.00211 * 84.06068 * 7 6 5 17 17 O 1.21291 * 119.99934 * 4.36964 * 16 7 6 18 18 C 1.50706 * 120.00269 * 184.36840 * 16 7 6 19 19 H 1.09000 * 109.10765 * 339.02428 * 18 16 7 20 20 C 1.52623 * 109.11873 * 98.16544 * 18 16 7 21 21 C 1.53449 * 109.37443 * 174.96969 * 20 18 16 22 22 C 1.51473 * 107.36322 * 295.97294 * 21 20 18 23 23 O 1.21250 * 121.18635 * 222.51498 * 22 21 20 24 24 C 1.47598 * 117.63397 * 42.53919 * 22 21 20 25 25 C 1.39784 * 119.72709 * 168.74495 * 24 22 21 26 26 C 1.37898 * 119.77278 * 179.73169 * 25 24 22 27 27 C 1.38425 * 119.95034 * 0.02562 * 26 25 24 28 28 C 1.38241 * 120.49144 * 0.07949 * 27 26 25 29 29 C 1.38312 * 120.36446 * 359.97438 * 28 27 26 30 30 H 1.09001 * 109.46873 * 60.00753 * 1 2 3 31 31 H 1.09004 * 109.46743 * 179.97438 * 1 2 3 32 32 H 1.08992 * 109.47505 * 300.00272 * 1 2 3 33 33 H 1.08997 * 109.46834 * 60.00391 * 5 3 2 34 34 H 1.09002 * 109.47172 * 300.00056 * 5 3 2 35 35 H 1.08993 * 109.47285 * 59.99758 * 6 5 3 36 36 H 1.09002 * 109.46736 * 299.99670 * 6 5 3 37 37 H 0.96996 * 119.99562 * 179.97438 * 11 10 8 38 38 H 1.09002 * 109.48967 * 54.99700 * 20 18 16 39 39 H 1.09001 * 109.48479 * 294.94030 * 20 18 16 40 40 H 1.08998 * 109.87413 * 55.43839 * 21 20 18 41 41 H 1.09001 * 109.87672 * 176.50898 * 21 20 18 42 42 H 1.08010 * 120.11466 * 359.71120 * 25 24 22 43 43 H 1.08000 * 120.02238 * 180.02562 * 26 25 24 44 44 H 1.08005 * 119.75306 * 180.10669 * 27 26 25 45 45 H 1.08001 * 119.81926 * 179.97438 * 28 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4520 0.0000 0.0000 3 6 2.0613 1.1960 0.0000 4 8 1.4032 2.2094 -0.0005 5 6 3.5663 1.2750 0.0006 6 6 4.0000 2.7422 0.0011 7 7 5.4629 2.8190 0.0011 8 6 6.1411 2.9771 1.1820 9 1 7.1013 2.5027 1.3210 10 6 5.5931 3.7477 2.2001 11 7 5.9798 3.5658 3.4428 12 14 4.3065 5.0423 1.8023 13 1 2.9505 4.4687 1.9969 14 1 4.4840 6.2097 2.7028 15 1 4.4620 5.4775 0.3911 16 6 6.1422 2.7341 -1.1599 17 8 5.5407 2.6740 -2.2115 18 6 7.6491 2.7139 -1.1516 19 1 8.0065 3.1395 -0.2139 20 6 8.1303 1.2696 -1.2606 21 6 9.6601 1.2503 -1.3794 22 6 10.0214 1.9414 -2.6780 23 8 10.8789 1.4946 -3.4095 24 6 9.2929 3.1784 -3.0209 25 6 9.7427 3.9780 -4.0755 26 6 9.0596 5.1310 -4.4003 27 6 7.9330 5.4924 -3.6818 28 6 7.4854 4.7061 -2.6367 29 6 8.1584 3.5468 -2.2959 30 1 -0.3633 0.5137 -0.8901 31 1 -0.3633 -1.0277 -0.0005 32 1 -0.3634 0.5138 0.8899 33 1 3.9563 0.7808 -0.8892 34 1 3.9557 0.7810 0.8908 35 1 3.6099 3.2361 0.8910 36 1 3.6106 3.2365 -0.8890 37 1 5.5974 4.1040 4.1534 38 1 7.6911 0.8056 -2.1437 39 1 7.8277 0.7175 -0.3708 40 1 10.1037 1.7846 -0.5393 41 1 10.0176 0.2207 -1.3955 42 1 10.6226 3.6939 -4.6339 43 1 9.4034 5.7516 -5.2146 44 1 7.3993 6.3952 -3.9401 45 1 6.6054 4.9985 -2.0831 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000871343848.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:51:42 Heat of formation + Delta-G solvation = -123.637664 kcal Electronic energy + Delta-G solvation = -30862.395142 eV Core-core repulsion = 26617.372663 eV Total energy + Delta-G solvation = -4245.022479 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 345.145 amu Computer time = 0.74 seconds Orbital eigenvalues (eV) -40.61660 -40.24409 -38.97232 -37.84932 -36.43960 -35.45439 -34.89824 -32.44229 -31.36290 -30.91131 -30.30668 -28.36375 -27.50127 -25.07038 -24.33517 -23.16751 -22.95178 -21.58415 -20.57172 -19.22735 -18.85793 -17.68036 -17.16039 -16.70535 -16.50701 -16.39484 -16.27806 -15.83181 -15.46492 -15.09638 -14.57134 -14.32664 -14.12726 -13.97238 -13.91666 -13.64427 -13.21915 -13.04887 -12.93896 -12.78520 -12.71376 -12.42964 -12.22108 -12.03896 -11.90696 -11.78049 -11.62929 -11.22467 -11.19696 -10.89742 -10.87211 -10.71596 -10.68248 -10.29845 -10.22294 -9.97515 -9.41821 -9.39804 -8.86192 -8.72482 -8.44486 -8.06544 -6.66984 -4.27333 0.86614 1.57136 2.43617 2.56551 2.82762 2.99036 3.16031 3.21762 3.45148 3.88080 3.98680 4.17001 4.23521 4.71582 4.80719 4.91758 5.03764 5.08824 5.11940 5.18295 5.18353 5.24794 5.31204 5.42639 5.44257 5.50753 5.57104 5.59112 5.67711 5.83559 5.87300 5.92921 5.93736 6.14323 6.17105 6.19441 6.23139 6.40459 6.42191 6.53224 6.55720 6.59757 6.72069 7.07980 7.10299 7.63325 7.83553 7.93723 8.01724 8.73189 9.11448 9.42437 10.41994 Molecular weight = 345.15amu Principal moments of inertia in cm(-1) A = 0.011088 B = 0.003769 C = 0.003477 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2524.695568 B = 7427.925482 C = 8051.408195 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.035 3.965 2 O -0.362 6.362 3 C 0.467 3.533 4 O -0.511 6.511 5 C -0.123 4.123 6 C 0.114 3.886 7 N -0.458 5.458 8 C -0.358 4.358 9 H 0.112 0.888 10 C 0.073 3.927 11 N -0.849 5.849 12 Si 0.866 3.134 13 H -0.268 1.268 14 H -0.286 1.286 15 H -0.260 1.260 16 C 0.487 3.513 17 O -0.584 6.584 18 C -0.071 4.071 19 H 0.128 0.872 20 C -0.098 4.098 21 C -0.161 4.161 22 C 0.405 3.595 23 O -0.465 6.465 24 C -0.173 4.173 25 C -0.068 4.068 26 C -0.144 4.144 27 C -0.088 4.088 28 C -0.109 4.109 29 C 0.006 3.994 30 H 0.060 0.940 31 H 0.098 0.902 32 H 0.061 0.939 33 H 0.108 0.892 34 H 0.115 0.885 35 H 0.080 0.920 36 H 0.078 0.922 37 H 0.278 0.722 38 H 0.071 0.929 39 H 0.089 0.911 40 H 0.107 0.893 41 H 0.095 0.905 42 H 0.128 0.872 43 H 0.124 0.876 44 H 0.123 0.877 45 H 0.128 0.872 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.093 -2.549 -6.144 6.652 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.059 4.059 2 O -0.279 6.279 3 C 0.310 3.690 4 O -0.398 6.398 5 C -0.162 4.162 6 C -0.010 4.010 7 N -0.178 5.178 8 C -0.485 4.485 9 H 0.130 0.870 10 C -0.136 4.136 11 N -0.482 5.482 12 Si 0.693 3.307 13 H -0.195 1.195 14 H -0.213 1.213 15 H -0.184 1.184 16 C 0.276 3.724 17 O -0.468 6.468 18 C -0.092 4.092 19 H 0.146 0.854 20 C -0.136 4.136 21 C -0.199 4.199 22 C 0.284 3.716 23 O -0.342 6.342 24 C -0.174 4.174 25 C -0.086 4.086 26 C -0.162 4.162 27 C -0.106 4.106 28 C -0.127 4.127 29 C 0.005 3.995 30 H 0.079 0.921 31 H 0.116 0.884 32 H 0.080 0.920 33 H 0.126 0.874 34 H 0.133 0.867 35 H 0.098 0.902 36 H 0.096 0.904 37 H 0.088 0.912 38 H 0.090 0.910 39 H 0.108 0.892 40 H 0.125 0.875 41 H 0.113 0.887 42 H 0.146 0.854 43 H 0.142 0.858 44 H 0.141 0.859 45 H 0.146 0.854 Dipole moment (debyes) X Y Z Total from point charges -0.012 -2.464 -6.800 7.233 hybrid contribution -1.111 0.899 0.223 1.446 sum -1.123 -1.565 -6.578 6.854 Atomic orbital electron populations 1.23210 0.77003 1.03296 1.02417 1.86532 1.23001 1.33937 1.84395 1.23980 0.92295 0.81061 0.71641 1.90653 1.67376 1.36339 1.45452 1.21797 0.86295 1.01671 1.06428 1.21419 0.83017 0.93352 1.03169 1.43745 1.03665 1.63850 1.06550 1.19082 1.06717 1.32928 0.89730 0.87026 1.25278 0.97152 0.96523 0.94620 1.69749 1.42220 1.37177 0.99086 0.87119 0.81688 0.82076 0.79829 1.19463 1.21271 1.18371 1.20025 0.88701 0.80308 0.83355 1.90602 1.70234 1.54846 1.31112 1.20170 0.94310 0.95972 0.98742 0.85406 1.21370 0.93081 0.95204 1.03956 1.22322 0.97902 1.02487 0.97174 1.22809 0.78933 0.83263 0.86570 1.90481 1.28053 1.64310 1.51335 1.20186 0.98993 0.98563 0.99689 1.21257 0.98983 0.93660 0.94670 1.21045 0.96647 0.97590 1.00890 1.21311 0.95582 0.98983 0.94708 1.21168 0.99670 0.94245 0.97643 1.19760 0.92451 0.93841 0.93464 0.92088 0.88371 0.92041 0.87406 0.86681 0.90221 0.90356 0.91177 0.91012 0.89210 0.87532 0.88690 0.85369 0.85830 0.85905 0.85428 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.39 10.56 101.05 1.07 1.46 16 2 O -0.36 -5.43 10.57 -39.25 -0.41 -5.85 16 3 C 0.47 8.21 7.96 36.01 0.29 8.49 16 4 O -0.51 -10.26 15.73 -18.75 -0.30 -10.55 16 5 C -0.12 -2.18 6.09 -27.88 -0.17 -2.35 16 6 C 0.11 2.37 3.27 -4.04 -0.01 2.36 16 7 N -0.46 -9.70 2.24 -114.81 -0.26 -9.96 16 8 C -0.36 -8.11 8.80 -14.94 -0.13 -8.24 16 9 H 0.11 2.54 6.85 -52.48 -0.36 2.18 16 10 C 0.07 1.76 5.29 -17.47 -0.09 1.67 16 11 N -0.85 -21.39 13.96 55.50 0.77 -20.61 16 12 Si 0.87 19.47 24.92 -169.99 -4.24 15.23 16 13 H -0.27 -6.11 6.66 56.52 0.38 -5.73 16 14 H -0.29 -6.41 7.11 56.52 0.40 -6.01 16 15 H -0.26 -5.90 7.11 56.52 0.40 -5.49 16 16 C 0.49 9.87 5.33 -10.98 -0.06 9.81 16 17 O -0.58 -13.03 15.46 5.55 0.09 -12.95 16 18 C -0.07 -1.23 2.09 -93.25 -0.20 -1.43 16 19 H 0.13 2.24 6.12 -51.93 -0.32 1.92 16 20 C -0.10 -1.44 5.13 -26.69 -0.14 -1.58 16 21 C -0.16 -2.09 6.19 -27.27 -0.17 -2.26 16 22 C 0.41 6.23 6.89 -30.11 -0.21 6.03 16 23 O -0.47 -8.03 17.26 5.58 0.10 -7.93 16 24 C -0.17 -2.76 5.82 -105.00 -0.61 -3.37 16 25 C -0.07 -0.97 9.61 -39.13 -0.38 -1.35 16 26 C -0.14 -1.88 10.04 -39.64 -0.40 -2.28 16 27 C -0.09 -1.25 10.03 -39.51 -0.40 -1.64 16 28 C -0.11 -1.85 8.56 -39.55 -0.34 -2.19 16 29 C 0.01 0.10 5.24 -104.23 -0.55 -0.45 16 30 H 0.06 0.67 8.13 -51.93 -0.42 0.25 16 31 H 0.10 0.78 8.14 -51.93 -0.42 0.36 16 32 H 0.06 0.69 8.13 -51.93 -0.42 0.27 16 33 H 0.11 1.81 8.14 -51.93 -0.42 1.39 16 34 H 0.12 1.94 8.14 -51.93 -0.42 1.52 16 35 H 0.08 1.78 3.17 -51.93 -0.16 1.61 16 36 H 0.08 1.70 7.50 -51.93 -0.39 1.31 16 37 H 0.28 6.64 8.31 -40.82 -0.34 6.30 16 38 H 0.07 1.11 8.13 -51.93 -0.42 0.68 16 39 H 0.09 1.26 8.14 -51.93 -0.42 0.83 16 40 H 0.11 1.24 8.14 -51.93 -0.42 0.81 16 41 H 0.09 1.08 8.14 -51.93 -0.42 0.66 16 42 H 0.13 1.69 7.72 -52.48 -0.41 1.28 16 43 H 0.12 1.25 8.06 -52.49 -0.42 0.82 16 44 H 0.12 1.44 8.06 -52.48 -0.42 1.02 16 45 H 0.13 2.35 7.09 -52.49 -0.37 1.97 16 LS Contribution 374.04 15.07 5.64 5.64 Total: -1.00 -29.44 374.04 -6.91 -36.35 By element: Atomic # 1 Polarization: 13.76 SS G_CDS: -5.82 Total: 7.95 kcal Atomic # 6 Polarization: 5.18 SS G_CDS: -2.49 Total: 2.69 kcal Atomic # 7 Polarization: -31.09 SS G_CDS: 0.52 Total: -30.58 kcal Atomic # 8 Polarization: -36.75 SS G_CDS: -0.53 Total: -37.28 kcal Atomic # 14 Polarization: 19.47 SS G_CDS: -4.24 Total: 15.23 kcal Total LS contribution 5.64 Total: 5.64 kcal Total: -29.44 -6.91 -36.35 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000871343848.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -87.287 kcal (2) G-P(sol) polarization free energy of solvation -29.437 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -116.724 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.914 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.351 kcal (6) G-S(sol) free energy of system = (1) + (5) -123.638 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.74 seconds