Wall clock time and date at job start Wed Apr 1 2020 03:51:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45197 * 1 3 3 C 1.34227 * 116.99827 * 2 1 4 4 O 1.20831 * 120.00175 * 359.97438 * 3 2 1 5 5 C 1.50702 * 120.00179 * 179.97438 * 3 2 1 6 6 C 1.53002 * 109.47047 * 180.02562 * 5 3 2 7 7 N 1.46497 * 109.46953 * 180.02562 * 6 5 3 8 8 C 1.37097 * 119.99987 * 264.06038 * 7 6 5 9 9 H 1.08004 * 120.00022 * 145.06287 * 8 7 6 10 10 C 1.38944 * 120.00284 * 325.06884 * 8 7 6 11 11 N 1.31415 * 120.00413 * 157.75252 * 10 8 7 12 12 Si 1.86808 * 119.99784 * 337.75307 * 10 8 7 13 13 H 1.48505 * 109.46820 * 95.29080 * 12 10 8 14 14 H 1.48497 * 109.47178 * 215.29060 * 12 10 8 15 15 H 1.48497 * 109.46961 * 335.29451 * 12 10 8 16 16 C 1.34777 * 120.00211 * 84.06068 * 7 6 5 17 17 O 1.21291 * 119.99934 * 4.36964 * 16 7 6 18 18 C 1.50706 * 120.00269 * 184.36840 * 16 7 6 19 19 H 1.09000 * 109.10765 * 339.02428 * 18 16 7 20 20 C 1.52623 * 109.11873 * 98.16544 * 18 16 7 21 21 C 1.53449 * 109.37443 * 174.96969 * 20 18 16 22 22 C 1.51473 * 107.36322 * 295.97294 * 21 20 18 23 23 O 1.21250 * 121.18635 * 222.51498 * 22 21 20 24 24 C 1.47598 * 117.63397 * 42.53919 * 22 21 20 25 25 C 1.39784 * 119.72709 * 168.74495 * 24 22 21 26 26 C 1.37898 * 119.77278 * 179.73169 * 25 24 22 27 27 C 1.38425 * 119.95034 * 0.02562 * 26 25 24 28 28 C 1.38241 * 120.49144 * 0.07949 * 27 26 25 29 29 C 1.38312 * 120.36446 * 359.97438 * 28 27 26 30 30 H 1.09001 * 109.46873 * 60.00753 * 1 2 3 31 31 H 1.09004 * 109.46743 * 179.97438 * 1 2 3 32 32 H 1.08992 * 109.47505 * 300.00272 * 1 2 3 33 33 H 1.08997 * 109.46834 * 60.00391 * 5 3 2 34 34 H 1.09002 * 109.47172 * 300.00056 * 5 3 2 35 35 H 1.08993 * 109.47285 * 59.99758 * 6 5 3 36 36 H 1.09002 * 109.46736 * 299.99670 * 6 5 3 37 37 H 0.96996 * 119.99562 * 179.97438 * 11 10 8 38 38 H 1.09002 * 109.48967 * 54.99700 * 20 18 16 39 39 H 1.09001 * 109.48479 * 294.94030 * 20 18 16 40 40 H 1.08998 * 109.87413 * 55.43839 * 21 20 18 41 41 H 1.09001 * 109.87672 * 176.50898 * 21 20 18 42 42 H 1.08010 * 120.11466 * 359.71120 * 25 24 22 43 43 H 1.08000 * 120.02238 * 180.02562 * 26 25 24 44 44 H 1.08005 * 119.75306 * 180.10669 * 27 26 25 45 45 H 1.08001 * 119.81926 * 179.97438 * 28 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4520 0.0000 0.0000 3 6 2.0613 1.1960 0.0000 4 8 1.4032 2.2094 -0.0005 5 6 3.5663 1.2750 0.0006 6 6 4.0000 2.7422 0.0011 7 7 5.4629 2.8190 0.0011 8 6 6.1411 2.9771 1.1820 9 1 7.1013 2.5027 1.3210 10 6 5.5931 3.7477 2.2001 11 7 5.9798 3.5658 3.4428 12 14 4.3065 5.0423 1.8023 13 1 2.9505 4.4687 1.9969 14 1 4.4840 6.2097 2.7028 15 1 4.4620 5.4775 0.3911 16 6 6.1422 2.7341 -1.1599 17 8 5.5407 2.6740 -2.2115 18 6 7.6491 2.7139 -1.1516 19 1 8.0065 3.1395 -0.2139 20 6 8.1303 1.2696 -1.2606 21 6 9.6601 1.2503 -1.3794 22 6 10.0214 1.9414 -2.6780 23 8 10.8789 1.4946 -3.4095 24 6 9.2929 3.1784 -3.0209 25 6 9.7427 3.9780 -4.0755 26 6 9.0596 5.1310 -4.4003 27 6 7.9330 5.4924 -3.6818 28 6 7.4854 4.7061 -2.6367 29 6 8.1584 3.5468 -2.2959 30 1 -0.3633 0.5137 -0.8901 31 1 -0.3633 -1.0277 -0.0005 32 1 -0.3634 0.5138 0.8899 33 1 3.9563 0.7808 -0.8892 34 1 3.9557 0.7810 0.8908 35 1 3.6099 3.2361 0.8910 36 1 3.6106 3.2365 -0.8890 37 1 5.5974 4.1040 4.1534 38 1 7.6911 0.8056 -2.1437 39 1 7.8277 0.7175 -0.3708 40 1 10.1037 1.7846 -0.5393 41 1 10.0176 0.2207 -1.3955 42 1 10.6226 3.6939 -4.6339 43 1 9.4034 5.7516 -5.2146 44 1 7.3993 6.3952 -3.9401 45 1 6.6054 4.9985 -2.0831 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000871343848.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:51:41 Heat of formation + Delta-G solvation = -139.051885 kcal Electronic energy + Delta-G solvation = -30863.063552 eV Core-core repulsion = 26617.372663 eV Total energy + Delta-G solvation = -4245.690889 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 345.145 amu Computer time = 0.89 seconds Orbital eigenvalues (eV) -41.97405 -41.57269 -40.46181 -39.08872 -37.77739 -37.02015 -36.29716 -34.21651 -32.83418 -32.22462 -31.45001 -29.60994 -28.61918 -26.85276 -25.77423 -24.36952 -24.11359 -22.90305 -21.94423 -20.86274 -20.10783 -19.14374 -18.58536 -18.26018 -17.87277 -17.75630 -17.61302 -17.11780 -16.81466 -16.48776 -15.95753 -15.83270 -15.46646 -15.34457 -15.15627 -15.02236 -14.52231 -14.47344 -14.31228 -14.28702 -14.06437 -13.94593 -13.63969 -13.22163 -13.19071 -13.04598 -12.87832 -12.80958 -12.67949 -12.38834 -12.15276 -12.06925 -11.88940 -11.81200 -11.74676 -11.67347 -11.18665 -10.59565 -10.48367 -9.97149 -9.87034 -9.64696 -8.54471 -6.12186 -0.31990 0.38198 1.04210 1.16903 1.31040 1.37653 1.38531 1.54626 1.82387 2.14020 2.50122 2.82323 2.94864 3.06319 3.54759 3.65915 3.75313 3.81521 3.89854 3.97663 4.08842 4.14474 4.18023 4.27387 4.28482 4.32445 4.38865 4.39925 4.44986 4.54527 4.63272 4.65901 4.70777 4.79977 4.82072 4.96844 4.99762 5.06449 5.18179 5.24717 5.33510 5.36427 5.44331 5.52359 5.92354 6.05543 6.20452 6.44799 6.60125 6.92523 7.36432 7.70413 8.57714 Molecular weight = 345.15amu Principal moments of inertia in cm(-1) A = 0.011088 B = 0.003769 C = 0.003477 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2524.695568 B = 7427.925482 C = 8051.408195 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.026 3.974 2 O -0.359 6.359 3 C 0.472 3.528 4 O -0.542 6.542 5 C -0.115 4.115 6 C 0.112 3.888 7 N -0.467 5.467 8 C -0.340 4.340 9 H 0.113 0.887 10 C 0.047 3.953 11 N -0.879 5.879 12 Si 0.898 3.102 13 H -0.276 1.276 14 H -0.284 1.284 15 H -0.270 1.270 16 C 0.492 3.508 17 O -0.604 6.604 18 C -0.067 4.067 19 H 0.123 0.877 20 C -0.092 4.092 21 C -0.152 4.152 22 C 0.406 3.594 23 O -0.486 6.486 24 C -0.186 4.186 25 C -0.072 4.072 26 C -0.132 4.132 27 C -0.086 4.086 28 C -0.135 4.135 29 C -0.011 4.011 30 H 0.062 0.938 31 H 0.138 0.862 32 H 0.060 0.940 33 H 0.118 0.882 34 H 0.125 0.875 35 H 0.064 0.936 36 H 0.063 0.937 37 H 0.279 0.721 38 H 0.063 0.937 39 H 0.098 0.902 40 H 0.124 0.876 41 H 0.116 0.884 42 H 0.143 0.857 43 H 0.162 0.838 44 H 0.148 0.852 45 H 0.103 0.897 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.867 -3.280 -7.303 8.053 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.067 4.067 2 O -0.275 6.275 3 C 0.317 3.683 4 O -0.432 6.432 5 C -0.154 4.154 6 C -0.011 4.011 7 N -0.188 5.188 8 C -0.467 4.467 9 H 0.130 0.870 10 C -0.159 4.159 11 N -0.515 5.515 12 Si 0.727 3.273 13 H -0.203 1.203 14 H -0.211 1.211 15 H -0.194 1.194 16 C 0.282 3.718 17 O -0.489 6.489 18 C -0.088 4.088 19 H 0.141 0.859 20 C -0.130 4.130 21 C -0.189 4.189 22 C 0.287 3.713 23 O -0.364 6.364 24 C -0.187 4.187 25 C -0.090 4.090 26 C -0.149 4.149 27 C -0.104 4.104 28 C -0.154 4.154 29 C -0.012 4.012 30 H 0.080 0.920 31 H 0.156 0.844 32 H 0.079 0.921 33 H 0.136 0.864 34 H 0.143 0.857 35 H 0.082 0.918 36 H 0.081 0.919 37 H 0.090 0.910 38 H 0.082 0.918 39 H 0.117 0.883 40 H 0.142 0.858 41 H 0.135 0.865 42 H 0.160 0.840 43 H 0.179 0.821 44 H 0.165 0.835 45 H 0.121 0.879 Dipole moment (debyes) X Y Z Total from point charges 0.752 -3.209 -7.959 8.615 hybrid contribution -1.404 1.130 0.434 1.853 sum -0.652 -2.079 -7.525 7.834 Atomic orbital electron populations 1.23605 0.74624 1.05980 1.02513 1.86507 1.25240 1.32147 1.83636 1.23838 0.92160 0.81379 0.70953 1.90642 1.67965 1.37497 1.47087 1.21639 0.86931 0.99473 1.07351 1.21323 0.82898 0.95335 1.01585 1.43825 1.03812 1.64595 1.06538 1.19108 1.06454 1.31524 0.89598 0.86963 1.25550 0.98091 0.97488 0.94773 1.69772 1.43781 1.38440 0.99535 0.86619 0.80541 0.81290 0.78899 1.20290 1.21100 1.19447 1.20537 0.90030 0.78664 0.82559 1.90581 1.71135 1.55413 1.31756 1.20162 0.91786 0.97859 0.98975 0.85930 1.21339 0.94396 0.93291 1.03986 1.22320 0.96336 1.03773 0.96447 1.23059 0.78250 0.82971 0.87022 1.90474 1.29041 1.64812 1.52116 1.20348 0.98879 0.99289 1.00206 1.21576 0.99416 0.93833 0.94131 1.21444 0.95370 0.97164 1.00959 1.21615 0.95945 0.99272 0.93553 1.21160 0.99642 0.95409 0.99150 1.19744 0.93370 0.94089 0.93990 0.91952 0.84397 0.92096 0.86406 0.85691 0.91765 0.91869 0.91033 0.91805 0.88308 0.85825 0.86546 0.83966 0.82051 0.83466 0.87909 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.53 10.56 113.37 1.20 1.73 16 2 O -0.36 -10.28 10.57 -51.39 -0.54 -10.82 16 3 C 0.47 16.44 7.96 71.24 0.57 17.01 16 4 O -0.54 -21.94 15.73 21.95 0.35 -21.60 16 5 C -0.12 -4.05 6.09 29.85 0.18 -3.87 16 6 C 0.11 4.75 3.27 86.38 0.28 5.03 16 7 N -0.47 -19.98 2.24 -635.54 -1.42 -21.40 16 8 C -0.34 -15.44 8.80 84.04 0.74 -14.70 16 9 H 0.11 5.07 6.85 -2.91 -0.02 5.05 16 10 C 0.05 2.28 5.29 84.92 0.45 2.73 16 11 N -0.88 -44.60 13.96 21.66 0.30 -44.30 16 12 Si 0.90 40.89 24.92 68.60 1.71 42.60 16 13 H -0.28 -12.80 6.66 99.48 0.66 -12.13 16 14 H -0.28 -12.71 7.11 99.48 0.71 -12.00 16 15 H -0.27 -12.54 7.11 99.48 0.71 -11.84 16 16 C 0.49 20.09 5.33 87.66 0.47 20.56 16 17 O -0.60 -27.30 15.46 -3.06 -0.05 -27.35 16 18 C -0.07 -2.30 2.09 -12.50 -0.03 -2.33 16 19 H 0.12 4.28 6.12 -2.39 -0.01 4.27 16 20 C -0.09 -2.60 5.13 30.62 0.16 -2.44 16 21 C -0.15 -3.61 6.19 30.24 0.19 -3.42 16 22 C 0.41 11.84 6.89 28.40 0.20 12.03 16 23 O -0.49 -15.95 17.26 -2.94 -0.05 -16.00 16 24 C -0.19 -5.69 5.82 -20.11 -0.12 -5.80 16 25 C -0.07 -1.90 9.61 22.56 0.22 -1.69 16 26 C -0.13 -3.06 10.04 22.23 0.22 -2.84 16 27 C -0.09 -2.30 10.03 22.32 0.22 -2.07 16 28 C -0.14 -4.59 8.56 22.29 0.19 -4.40 16 29 C -0.01 -0.37 5.24 -19.61 -0.10 -0.48 16 30 H 0.06 1.29 8.13 -2.39 -0.02 1.27 16 31 H 0.14 1.75 8.14 -2.39 -0.02 1.73 16 32 H 0.06 1.29 8.13 -2.39 -0.02 1.27 16 33 H 0.12 3.89 8.14 -2.39 -0.02 3.87 16 34 H 0.13 4.13 8.14 -2.39 -0.02 4.11 16 35 H 0.06 2.93 3.17 -2.39 -0.01 2.92 16 36 H 0.06 2.83 7.50 -2.39 -0.02 2.81 16 37 H 0.28 13.51 8.31 -92.71 -0.77 12.74 16 38 H 0.06 1.90 8.13 -2.39 -0.02 1.88 16 39 H 0.10 2.60 8.14 -2.39 -0.02 2.58 16 40 H 0.12 2.57 8.14 -2.39 -0.02 2.55 16 41 H 0.12 2.32 8.14 -2.39 -0.02 2.30 16 42 H 0.14 3.37 7.72 -2.91 -0.02 3.34 16 43 H 0.16 2.52 8.06 -2.91 -0.02 2.50 16 44 H 0.15 3.12 8.06 -2.91 -0.02 3.09 16 45 H 0.10 3.93 7.09 -2.91 -0.02 3.91 16 Total: -1.00 -63.90 374.04 6.31 -57.60 By element: Atomic # 1 Polarization: 25.24 SS G_CDS: 0.98 Total: 26.22 kcal Atomic # 6 Polarization: 10.01 SS G_CDS: 5.03 Total: 15.05 kcal Atomic # 7 Polarization: -64.58 SS G_CDS: -1.12 Total: -65.71 kcal Atomic # 8 Polarization: -75.47 SS G_CDS: -0.30 Total: -75.76 kcal Atomic # 14 Polarization: 40.89 SS G_CDS: 1.71 Total: 42.60 kcal Total: -63.90 6.31 -57.60 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000871343848.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -81.455 kcal (2) G-P(sol) polarization free energy of solvation -63.904 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -145.359 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.307 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -57.597 kcal (6) G-S(sol) free energy of system = (1) + (5) -139.052 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.89 seconds