Wall clock time and date at job start Wed Apr 1 2020 03:51:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45202 * 1 3 3 C 1.34233 * 116.99509 * 2 1 4 4 O 1.20824 * 120.00265 * 0.02562 * 3 2 1 5 5 C 1.50695 * 119.99792 * 180.02562 * 3 2 1 6 6 C 1.53000 * 109.47312 * 179.97438 * 5 3 2 7 7 N 1.46494 * 109.47396 * 179.97438 * 6 5 3 8 8 C 1.37102 * 120.00200 * 89.99909 * 7 6 5 9 9 H 1.08002 * 119.99762 * 313.57833 * 8 7 6 10 10 C 1.38949 * 120.00272 * 133.57734 * 8 7 6 11 11 N 1.31412 * 120.00315 * 159.51426 * 10 8 7 12 12 Si 1.86798 * 119.99809 * 339.50939 * 10 8 7 13 13 H 1.48499 * 109.46870 * 95.11908 * 12 10 8 14 14 H 1.48502 * 109.47249 * 215.11691 * 12 10 8 15 15 H 1.48503 * 109.47412 * 335.11991 * 12 10 8 16 16 C 1.34774 * 120.00096 * 269.99715 * 7 6 5 17 17 O 1.21297 * 119.99916 * 185.51748 * 16 7 6 18 18 C 1.50699 * 119.99808 * 5.52561 * 16 7 6 19 19 H 1.08993 * 109.11749 * 25.05877 * 18 16 7 20 20 C 1.52619 * 109.12088 * 265.90533 * 18 16 7 21 21 C 1.53448 * 109.37096 * 184.94898 * 20 18 16 22 22 C 1.51469 * 107.37051 * 64.02481 * 21 20 18 23 23 O 1.21256 * 121.17595 * 137.51007 * 22 21 20 24 24 C 1.47592 * 117.64472 * 317.52947 * 22 21 20 25 25 C 1.39789 * 119.72854 * 191.22318 * 24 22 21 26 26 C 1.37893 * 119.77188 * 180.20463 * 25 24 22 27 27 C 1.38424 * 119.95295 * 0.02562 * 26 25 24 28 28 C 1.38241 * 120.49029 * 359.89930 * 27 26 25 29 29 C 1.38381 * 120.34567 * 0.07256 * 28 27 26 30 30 H 1.09004 * 109.46888 * 180.02562 * 1 2 3 31 31 H 1.09003 * 109.47164 * 299.99727 * 1 2 3 32 32 H 1.08993 * 109.47504 * 60.00377 * 1 2 3 33 33 H 1.09003 * 109.47245 * 59.99671 * 5 3 2 34 34 H 1.09001 * 109.47294 * 299.99812 * 5 3 2 35 35 H 1.08993 * 109.47128 * 59.99649 * 6 5 3 36 36 H 1.09001 * 109.46803 * 300.00132 * 6 5 3 37 37 H 0.96996 * 120.00464 * 180.02562 * 11 10 8 38 38 H 1.09000 * 109.49194 * 304.91755 * 20 18 16 39 39 H 1.09001 * 109.49077 * 64.95721 * 20 18 16 40 40 H 1.08998 * 109.87340 * 183.49501 * 21 20 18 41 41 H 1.08998 * 109.87087 * 304.48477 * 21 20 18 42 42 H 1.07999 * 120.11168 * 0.22654 * 25 24 22 43 43 H 1.08003 * 120.02048 * 180.02562 * 26 25 24 44 44 H 1.08008 * 119.75308 * 179.87720 * 27 26 25 45 45 H 1.08003 * 119.82343 * 180.02562 * 28 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4520 0.0000 0.0000 3 6 2.0613 1.1961 0.0000 4 8 1.4032 2.2094 0.0005 5 6 3.5662 1.2750 -0.0006 6 6 4.0000 2.7422 -0.0011 7 7 5.4629 2.8190 -0.0011 8 6 6.1476 2.8545 -1.1883 9 1 5.8952 2.1624 -1.9781 10 6 7.1662 3.7808 -1.3756 11 7 8.0754 3.5793 -2.3028 12 14 7.2432 5.3126 -0.3093 13 1 8.1571 5.0727 0.8364 14 1 7.7491 6.4522 -1.1158 15 1 5.8847 5.6305 0.1993 16 6 6.1358 2.8548 1.1661 17 8 7.3376 3.0190 1.1685 18 6 5.3951 2.6906 2.4682 19 1 4.4762 2.1328 2.2883 20 6 5.0431 4.0692 3.0204 21 6 4.3992 3.9139 4.4045 22 6 5.4436 3.3167 5.3247 23 8 5.5910 3.7263 6.4565 24 6 6.2758 2.2189 4.7950 25 6 7.0836 1.4799 5.6642 26 6 7.8647 0.4568 5.1695 27 6 7.8468 0.1658 3.8163 28 6 7.0485 0.8928 2.9531 29 6 6.2577 1.9225 3.4319 30 1 -0.3633 -1.0277 0.0005 31 1 -0.3634 0.5138 0.8900 32 1 -0.3634 0.5137 -0.8899 33 1 3.9556 0.7811 -0.8908 34 1 3.9563 0.7808 0.8892 35 1 3.6106 3.2365 0.8888 36 1 3.6099 3.2361 -0.8911 37 1 8.7866 4.2257 -2.4333 38 1 5.9493 4.6688 3.1062 39 1 4.3430 4.5630 2.3466 40 1 4.0881 4.8887 4.7800 41 1 3.5374 3.2497 4.3397 42 1 7.0955 1.7092 6.7194 43 1 8.4900 -0.1170 5.8375 44 1 8.4614 -0.6349 3.4321 45 1 7.0426 0.6563 1.8993 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000871343849.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:51:45 Heat of formation + Delta-G solvation = -118.483490 kcal Electronic energy + Delta-G solvation = -31419.260843 eV Core-core repulsion = 27174.461866 eV Total energy + Delta-G solvation = -4244.798977 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 345.145 amu Computer time = 0.82 seconds Orbital eigenvalues (eV) -40.80886 -40.37435 -39.04081 -37.91859 -36.59548 -35.32032 -35.02172 -32.48212 -31.21452 -30.75587 -30.41821 -28.51766 -27.75621 -25.03560 -23.97731 -23.22653 -23.05284 -21.65175 -20.63304 -19.59170 -18.92497 -17.68457 -17.43215 -16.78889 -16.59162 -16.53173 -16.13433 -15.75430 -15.43802 -15.23829 -14.61609 -14.40713 -14.12692 -14.02332 -13.90121 -13.57160 -13.40518 -13.15261 -13.11683 -12.77094 -12.71141 -12.51539 -12.26000 -12.15041 -12.01097 -11.74219 -11.63619 -11.29169 -11.13877 -10.96445 -10.92832 -10.84051 -10.72987 -10.46804 -10.30680 -10.02975 -9.53351 -8.87826 -8.72745 -8.63704 -8.49321 -7.76928 -6.30109 -4.11568 0.77013 1.48339 2.24548 2.46374 2.69137 3.18191 3.38679 3.57108 3.65404 3.82084 4.04508 4.25872 4.45522 4.61403 4.72951 4.82592 4.94401 4.99010 5.04602 5.06522 5.08033 5.12192 5.16110 5.20530 5.25694 5.35517 5.39558 5.43215 5.50502 5.54380 5.63891 5.68624 5.77887 5.91580 6.00185 6.07228 6.12108 6.16622 6.31183 6.43238 6.43743 6.53391 6.62830 7.00988 7.51324 7.73452 7.75644 7.86314 8.62792 8.75835 9.30348 9.64250 10.75494 Molecular weight = 345.15amu Principal moments of inertia in cm(-1) A = 0.007274 B = 0.005625 C = 0.004017 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3848.656789 B = 4976.782901 C = 6968.248784 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.035 3.965 2 O -0.362 6.362 3 C 0.466 3.534 4 O -0.508 6.508 5 C -0.133 4.133 6 C 0.113 3.887 7 N -0.461 5.461 8 C -0.357 4.357 9 H 0.096 0.904 10 C 0.100 3.900 11 N -0.860 5.860 12 Si 0.898 3.102 13 H -0.256 1.256 14 H -0.304 1.304 15 H -0.276 1.276 16 C 0.462 3.538 17 O -0.525 6.525 18 C -0.080 4.080 19 H 0.102 0.898 20 C -0.109 4.109 21 C -0.161 4.161 22 C 0.404 3.596 23 O -0.461 6.461 24 C -0.171 4.171 25 C -0.069 4.069 26 C -0.139 4.139 27 C -0.086 4.086 28 C -0.103 4.103 29 C -0.003 4.003 30 H 0.098 0.902 31 H 0.061 0.939 32 H 0.062 0.938 33 H 0.117 0.883 34 H 0.103 0.897 35 H 0.069 0.931 36 H 0.090 0.910 37 H 0.273 0.727 38 H 0.077 0.923 39 H 0.087 0.913 40 H 0.097 0.903 41 H 0.104 0.896 42 H 0.129 0.871 43 H 0.125 0.875 44 H 0.126 0.874 45 H 0.135 0.865 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.785 -7.560 9.783 16.406 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.059 4.059 2 O -0.279 6.279 3 C 0.309 3.691 4 O -0.396 6.396 5 C -0.172 4.172 6 C -0.012 4.012 7 N -0.183 5.183 8 C -0.483 4.483 9 H 0.114 0.886 10 C -0.110 4.110 11 N -0.494 5.494 12 Si 0.727 3.273 13 H -0.181 1.181 14 H -0.232 1.232 15 H -0.201 1.201 16 C 0.250 3.750 17 O -0.405 6.405 18 C -0.102 4.102 19 H 0.120 0.880 20 C -0.147 4.147 21 C -0.199 4.199 22 C 0.283 3.717 23 O -0.337 6.337 24 C -0.172 4.172 25 C -0.087 4.087 26 C -0.157 4.157 27 C -0.104 4.104 28 C -0.121 4.121 29 C -0.004 4.004 30 H 0.116 0.884 31 H 0.080 0.920 32 H 0.081 0.919 33 H 0.135 0.865 34 H 0.121 0.879 35 H 0.087 0.913 36 H 0.108 0.892 37 H 0.083 0.917 38 H 0.096 0.904 39 H 0.105 0.895 40 H 0.115 0.885 41 H 0.122 0.878 42 H 0.147 0.853 43 H 0.143 0.857 44 H 0.144 0.856 45 H 0.153 0.847 Dipole moment (debyes) X Y Z Total from point charges -10.143 -6.907 10.230 15.976 hybrid contribution -0.151 0.724 0.190 0.764 sum -10.295 -6.183 10.420 15.899 Atomic orbital electron populations 1.23227 0.76788 1.03422 1.02469 1.86543 1.23140 1.33928 1.84265 1.23956 0.92240 0.81120 0.71833 1.90661 1.67334 1.36244 1.45362 1.22006 0.86337 1.02242 1.06580 1.21454 0.83813 0.92252 1.03671 1.43605 1.03141 1.66126 1.05433 1.18735 1.17360 1.19791 0.92375 0.88647 1.25282 0.93758 0.97567 0.94440 1.69745 1.11263 1.35110 1.33242 0.86560 0.79085 0.80435 0.81233 1.18143 1.23238 1.20141 1.20087 0.88062 0.82348 0.84482 1.90607 1.14146 1.49878 1.85850 1.20370 0.98871 0.96824 0.94091 0.88020 1.21519 1.02172 0.96026 0.94996 1.22319 0.98524 1.03300 0.95716 1.22769 0.81805 0.80434 0.86722 1.90493 1.65269 1.57824 1.20152 1.20146 1.02755 1.00452 0.93878 1.21251 0.93756 0.94104 0.99574 1.21091 1.00311 0.98625 0.95699 1.21352 0.97170 0.98648 0.93277 1.21265 0.95505 0.94677 1.00614 1.19595 0.94955 0.93993 0.91808 0.88361 0.92026 0.91940 0.86527 0.87918 0.91307 0.89160 0.91703 0.90437 0.89477 0.88480 0.87791 0.85314 0.85693 0.85607 0.84743 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.30 10.56 101.05 1.07 1.37 16 2 O -0.36 -4.33 10.57 -39.27 -0.41 -4.74 16 3 C 0.47 6.27 7.96 36.00 0.29 6.55 16 4 O -0.51 -7.92 15.73 -18.75 -0.29 -8.21 16 5 C -0.13 -1.81 5.92 -27.89 -0.17 -1.97 16 6 C 0.11 1.87 4.24 -4.05 -0.02 1.86 16 7 N -0.46 -9.75 2.07 -114.82 -0.24 -9.99 16 8 C -0.36 -9.16 9.64 -14.93 -0.14 -9.30 16 9 H 0.10 2.54 8.06 -52.49 -0.42 2.12 16 10 C 0.10 2.77 4.81 -17.47 -0.08 2.69 16 11 N -0.86 -25.05 13.96 55.50 0.77 -24.28 16 12 Si 0.90 22.94 25.09 -169.99 -4.27 18.68 16 13 H -0.26 -6.93 6.42 56.52 0.36 -6.56 16 14 H -0.30 -7.73 7.11 56.52 0.40 -7.33 16 15 H -0.28 -6.65 7.11 56.52 0.40 -6.25 16 16 C 0.46 9.71 4.02 -10.99 -0.04 9.67 16 17 O -0.53 -13.29 11.26 5.54 0.06 -13.23 16 18 C -0.08 -1.30 1.82 -93.25 -0.17 -1.47 16 19 H 0.10 1.37 5.31 -51.93 -0.28 1.10 16 20 C -0.11 -1.64 5.02 -26.69 -0.13 -1.77 16 21 C -0.16 -1.99 6.19 -27.27 -0.17 -2.16 16 22 C 0.40 6.06 6.89 -30.12 -0.21 5.85 16 23 O -0.46 -7.83 17.26 5.58 0.10 -7.73 16 24 C -0.17 -2.64 5.81 -105.03 -0.61 -3.25 16 25 C -0.07 -0.96 9.61 -39.13 -0.38 -1.34 16 26 C -0.14 -1.76 10.04 -39.64 -0.40 -2.16 16 27 C -0.09 -1.18 10.03 -39.51 -0.40 -1.58 16 28 C -0.10 -1.66 8.47 -39.53 -0.33 -1.99 16 29 C 0.00 -0.04 5.23 -104.23 -0.55 -0.59 16 30 H 0.10 0.58 8.14 -51.93 -0.42 0.16 16 31 H 0.06 0.52 8.13 -51.93 -0.42 0.09 16 32 H 0.06 0.54 8.13 -51.93 -0.42 0.12 16 33 H 0.12 1.61 8.14 -51.93 -0.42 1.19 16 34 H 0.10 1.24 7.02 -51.93 -0.36 0.87 16 35 H 0.07 1.03 5.67 -51.93 -0.29 0.73 16 36 H 0.09 1.58 8.00 -51.93 -0.42 1.16 16 37 H 0.27 7.57 8.31 -40.82 -0.34 7.23 16 38 H 0.08 1.32 8.13 -51.93 -0.42 0.90 16 39 H 0.09 1.22 7.22 -51.93 -0.37 0.84 16 40 H 0.10 1.08 8.14 -51.93 -0.42 0.65 16 41 H 0.10 1.04 8.14 -51.93 -0.42 0.62 16 42 H 0.13 1.65 7.72 -52.49 -0.40 1.24 16 43 H 0.13 1.21 8.06 -52.48 -0.42 0.79 16 44 H 0.13 1.42 8.06 -52.48 -0.42 1.00 16 45 H 0.13 2.34 7.01 -52.48 -0.37 1.97 16 LS Contribution 370.22 15.07 5.58 5.58 Total: -1.00 -33.82 370.22 -7.04 -40.86 By element: Atomic # 1 Polarization: 8.55 SS G_CDS: -5.90 Total: 2.65 kcal Atomic # 6 Polarization: 2.85 SS G_CDS: -2.44 Total: 0.41 kcal Atomic # 7 Polarization: -34.81 SS G_CDS: 0.54 Total: -34.27 kcal Atomic # 8 Polarization: -33.36 SS G_CDS: -0.55 Total: -33.91 kcal Atomic # 14 Polarization: 22.94 SS G_CDS: -4.27 Total: 18.68 kcal Total LS contribution 5.58 Total: 5.58 kcal Total: -33.82 -7.04 -40.86 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000871343849.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -77.619 kcal (2) G-P(sol) polarization free energy of solvation -33.824 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -111.443 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.041 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.865 kcal (6) G-S(sol) free energy of system = (1) + (5) -118.483 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.82 seconds