Wall clock time and date at job start Wed Apr 1 2020 03:51:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45202 * 1 3 3 C 1.34233 * 116.99509 * 2 1 4 4 O 1.20824 * 120.00265 * 0.02562 * 3 2 1 5 5 C 1.50695 * 119.99792 * 180.02562 * 3 2 1 6 6 C 1.53000 * 109.47312 * 179.97438 * 5 3 2 7 7 N 1.46494 * 109.47396 * 179.97438 * 6 5 3 8 8 C 1.37102 * 120.00200 * 89.99909 * 7 6 5 9 9 H 1.08002 * 119.99762 * 313.57833 * 8 7 6 10 10 C 1.38949 * 120.00272 * 133.57734 * 8 7 6 11 11 N 1.31412 * 120.00315 * 159.51426 * 10 8 7 12 12 Si 1.86798 * 119.99809 * 339.50939 * 10 8 7 13 13 H 1.48499 * 109.46870 * 95.11908 * 12 10 8 14 14 H 1.48502 * 109.47249 * 215.11691 * 12 10 8 15 15 H 1.48503 * 109.47412 * 335.11991 * 12 10 8 16 16 C 1.34774 * 120.00096 * 269.99715 * 7 6 5 17 17 O 1.21297 * 119.99916 * 185.51748 * 16 7 6 18 18 C 1.50699 * 119.99808 * 5.52561 * 16 7 6 19 19 H 1.08993 * 109.11749 * 25.05877 * 18 16 7 20 20 C 1.52619 * 109.12088 * 265.90533 * 18 16 7 21 21 C 1.53448 * 109.37096 * 184.94898 * 20 18 16 22 22 C 1.51469 * 107.37051 * 64.02481 * 21 20 18 23 23 O 1.21256 * 121.17595 * 137.51007 * 22 21 20 24 24 C 1.47592 * 117.64472 * 317.52947 * 22 21 20 25 25 C 1.39789 * 119.72854 * 191.22318 * 24 22 21 26 26 C 1.37893 * 119.77188 * 180.20463 * 25 24 22 27 27 C 1.38424 * 119.95295 * 0.02562 * 26 25 24 28 28 C 1.38241 * 120.49029 * 359.89930 * 27 26 25 29 29 C 1.38381 * 120.34567 * 0.07256 * 28 27 26 30 30 H 1.09004 * 109.46888 * 180.02562 * 1 2 3 31 31 H 1.09003 * 109.47164 * 299.99727 * 1 2 3 32 32 H 1.08993 * 109.47504 * 60.00377 * 1 2 3 33 33 H 1.09003 * 109.47245 * 59.99671 * 5 3 2 34 34 H 1.09001 * 109.47294 * 299.99812 * 5 3 2 35 35 H 1.08993 * 109.47128 * 59.99649 * 6 5 3 36 36 H 1.09001 * 109.46803 * 300.00132 * 6 5 3 37 37 H 0.96996 * 120.00464 * 180.02562 * 11 10 8 38 38 H 1.09000 * 109.49194 * 304.91755 * 20 18 16 39 39 H 1.09001 * 109.49077 * 64.95721 * 20 18 16 40 40 H 1.08998 * 109.87340 * 183.49501 * 21 20 18 41 41 H 1.08998 * 109.87087 * 304.48477 * 21 20 18 42 42 H 1.07999 * 120.11168 * 0.22654 * 25 24 22 43 43 H 1.08003 * 120.02048 * 180.02562 * 26 25 24 44 44 H 1.08008 * 119.75308 * 179.87720 * 27 26 25 45 45 H 1.08003 * 119.82343 * 180.02562 * 28 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4520 0.0000 0.0000 3 6 2.0613 1.1961 0.0000 4 8 1.4032 2.2094 0.0005 5 6 3.5662 1.2750 -0.0006 6 6 4.0000 2.7422 -0.0011 7 7 5.4629 2.8190 -0.0011 8 6 6.1476 2.8545 -1.1883 9 1 5.8952 2.1624 -1.9781 10 6 7.1662 3.7808 -1.3756 11 7 8.0754 3.5793 -2.3028 12 14 7.2432 5.3126 -0.3093 13 1 8.1571 5.0727 0.8364 14 1 7.7491 6.4522 -1.1158 15 1 5.8847 5.6305 0.1993 16 6 6.1358 2.8548 1.1661 17 8 7.3376 3.0190 1.1685 18 6 5.3951 2.6906 2.4682 19 1 4.4762 2.1328 2.2883 20 6 5.0431 4.0692 3.0204 21 6 4.3992 3.9139 4.4045 22 6 5.4436 3.3167 5.3247 23 8 5.5910 3.7263 6.4565 24 6 6.2758 2.2189 4.7950 25 6 7.0836 1.4799 5.6642 26 6 7.8647 0.4568 5.1695 27 6 7.8468 0.1658 3.8163 28 6 7.0485 0.8928 2.9531 29 6 6.2577 1.9225 3.4319 30 1 -0.3633 -1.0277 0.0005 31 1 -0.3634 0.5138 0.8900 32 1 -0.3634 0.5137 -0.8899 33 1 3.9556 0.7811 -0.8908 34 1 3.9563 0.7808 0.8892 35 1 3.6106 3.2365 0.8888 36 1 3.6099 3.2361 -0.8911 37 1 8.7866 4.2257 -2.4333 38 1 5.9493 4.6688 3.1062 39 1 4.3430 4.5630 2.3466 40 1 4.0881 4.8887 4.7800 41 1 3.5374 3.2497 4.3397 42 1 7.0955 1.7092 6.7194 43 1 8.4900 -0.1170 5.8375 44 1 8.4614 -0.6349 3.4321 45 1 7.0426 0.6563 1.8993 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000871343849.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:51:44 Heat of formation + Delta-G solvation = -138.639262 kcal Electronic energy + Delta-G solvation = -31420.134862 eV Core-core repulsion = 27174.461866 eV Total energy + Delta-G solvation = -4245.672997 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 345.145 amu Computer time = 0.75 seconds Orbital eigenvalues (eV) -42.09616 -41.41916 -40.50066 -39.10767 -37.65448 -36.72086 -36.49305 -34.38697 -32.41080 -32.16657 -31.51442 -29.80306 -28.61896 -26.74418 -25.27912 -24.38476 -24.19109 -22.99322 -21.71770 -21.20016 -20.09672 -19.17754 -18.70006 -17.96502 -17.74761 -17.64539 -17.33680 -17.06647 -16.93970 -16.61970 -15.89938 -15.80869 -15.49691 -15.21340 -15.10433 -15.08273 -14.58780 -14.45801 -14.36462 -14.30324 -14.10792 -13.72339 -13.56631 -13.30303 -13.07727 -12.97643 -12.91303 -12.73981 -12.52232 -12.45895 -12.19197 -12.10118 -11.99809 -11.92131 -11.72292 -11.53663 -10.77431 -10.67001 -10.39784 -9.96489 -9.72466 -9.61061 -8.41847 -6.19282 -0.35889 0.35466 1.19574 1.21705 1.32461 1.34621 1.48100 1.68503 1.94203 2.40945 2.53933 2.83120 2.98956 3.07216 3.38675 3.58626 3.72583 3.81704 3.85179 4.00029 4.06047 4.08093 4.14825 4.17271 4.28918 4.36620 4.38076 4.40529 4.46306 4.47056 4.54683 4.72299 4.77100 4.79861 4.82328 4.93165 4.98557 5.00673 5.10057 5.32666 5.41327 5.42806 5.50262 5.71333 5.88880 5.92706 6.38722 6.72480 6.77617 6.90228 7.30893 7.84035 8.67087 Molecular weight = 345.15amu Principal moments of inertia in cm(-1) A = 0.007274 B = 0.005625 C = 0.004017 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3848.656789 B = 4976.782901 C = 6968.248784 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.027 3.973 2 O -0.365 6.365 3 C 0.476 3.524 4 O -0.530 6.530 5 C -0.126 4.126 6 C 0.111 3.889 7 N -0.472 5.472 8 C -0.341 4.341 9 H 0.078 0.922 10 C 0.054 3.946 11 N -0.905 5.905 12 Si 0.939 3.061 13 H -0.283 1.283 14 H -0.306 1.306 15 H -0.252 1.252 16 C 0.465 3.535 17 O -0.571 6.571 18 C -0.071 4.071 19 H 0.133 0.867 20 C -0.111 4.111 21 C -0.148 4.148 22 C 0.403 3.597 23 O -0.486 6.486 24 C -0.185 4.185 25 C -0.074 4.074 26 C -0.129 4.129 27 C -0.087 4.087 28 C -0.125 4.125 29 C -0.018 4.018 30 H 0.129 0.871 31 H 0.066 0.934 32 H 0.060 0.940 33 H 0.112 0.888 34 H 0.122 0.878 35 H 0.094 0.906 36 H 0.080 0.920 37 H 0.271 0.729 38 H 0.050 0.950 39 H 0.101 0.899 40 H 0.115 0.885 41 H 0.138 0.862 42 H 0.141 0.859 43 H 0.160 0.840 44 H 0.148 0.852 45 H 0.113 0.887 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.159 -8.603 12.142 19.865 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.066 4.066 2 O -0.281 6.281 3 C 0.320 3.680 4 O -0.420 6.420 5 C -0.164 4.164 6 C -0.012 4.012 7 N -0.194 5.194 8 C -0.468 4.468 9 H 0.095 0.905 10 C -0.151 4.151 11 N -0.542 5.542 12 Si 0.768 3.232 13 H -0.210 1.210 14 H -0.235 1.235 15 H -0.176 1.176 16 C 0.255 3.745 17 O -0.454 6.454 18 C -0.092 4.092 19 H 0.151 0.849 20 C -0.149 4.149 21 C -0.185 4.185 22 C 0.283 3.717 23 O -0.364 6.364 24 C -0.186 4.186 25 C -0.092 4.092 26 C -0.147 4.147 27 C -0.105 4.105 28 C -0.143 4.143 29 C -0.018 4.018 30 H 0.147 0.853 31 H 0.085 0.915 32 H 0.079 0.921 33 H 0.130 0.870 34 H 0.140 0.860 35 H 0.112 0.888 36 H 0.099 0.901 37 H 0.080 0.920 38 H 0.069 0.931 39 H 0.120 0.880 40 H 0.133 0.867 41 H 0.156 0.844 42 H 0.159 0.841 43 H 0.178 0.822 44 H 0.166 0.834 45 H 0.131 0.869 Dipole moment (debyes) X Y Z Total from point charges -12.582 -7.967 12.585 19.498 hybrid contribution 0.559 0.871 -0.495 1.147 sum -12.023 -7.096 12.090 18.469 Atomic orbital electron populations 1.23559 0.74731 1.05624 1.02681 1.86519 1.25087 1.32772 1.83721 1.23655 0.91824 0.81282 0.71283 1.90660 1.67735 1.37017 1.46594 1.21804 0.87114 1.00101 1.07427 1.21546 0.80557 0.94606 1.04464 1.43710 1.05055 1.66415 1.04225 1.18677 1.16796 1.18084 0.93268 0.90467 1.25837 0.94222 0.99708 0.95305 1.69826 1.12613 1.36207 1.35594 0.85884 0.79512 0.78652 0.79157 1.21041 1.23531 1.17600 1.20878 0.87750 0.79972 0.85873 1.90581 1.16574 1.51449 1.86763 1.20345 0.99384 0.98326 0.91097 0.84926 1.21546 1.01642 0.94654 0.97023 1.22321 0.98359 1.04923 0.92929 1.23103 0.81935 0.79981 0.86643 1.90488 1.66054 1.58577 1.21264 1.20316 1.03527 1.01069 0.93700 1.21548 0.93423 0.94144 1.00110 1.21462 0.99630 0.97991 0.95608 1.21644 0.96511 0.98676 0.93635 1.21245 0.97102 0.95929 1.00030 1.19598 0.95684 0.94321 0.92231 0.85257 0.91485 0.92112 0.86972 0.85977 0.88823 0.90136 0.92001 0.93117 0.88017 0.86692 0.84433 0.84149 0.82203 0.83445 0.86935 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.39 10.56 113.37 1.20 1.59 16 2 O -0.36 -7.72 10.57 -51.45 -0.54 -8.26 16 3 C 0.48 11.65 7.96 71.23 0.57 12.22 16 4 O -0.53 -15.24 15.73 21.97 0.35 -14.90 16 5 C -0.13 -3.18 5.92 29.85 0.18 -3.01 16 6 C 0.11 3.52 4.24 86.38 0.37 3.89 16 7 N -0.47 -19.77 2.07 -635.56 -1.32 -21.09 16 8 C -0.34 -17.87 9.64 84.04 0.81 -17.06 16 9 H 0.08 4.25 8.06 -2.91 -0.02 4.23 16 10 C 0.05 3.10 4.81 84.93 0.41 3.51 16 11 N -0.91 -54.92 13.96 21.66 0.30 -54.61 16 12 Si 0.94 48.36 25.09 68.60 1.72 50.08 16 13 H -0.28 -15.77 6.42 99.48 0.64 -15.13 16 14 H -0.31 -15.65 7.11 99.48 0.71 -14.94 16 15 H -0.25 -11.73 7.11 99.48 0.71 -11.03 16 16 C 0.47 19.39 4.02 87.66 0.35 19.74 16 17 O -0.57 -29.53 11.26 -3.08 -0.03 -29.56 16 18 C -0.07 -2.15 1.82 -12.50 -0.02 -2.18 16 19 H 0.13 3.14 5.31 -2.39 -0.01 3.12 16 20 C -0.11 -3.05 5.02 30.62 0.15 -2.89 16 21 C -0.15 -3.14 6.19 30.24 0.19 -2.96 16 22 C 0.40 11.16 6.89 28.40 0.20 11.36 16 23 O -0.49 -15.55 17.26 -2.96 -0.05 -15.60 16 24 C -0.19 -5.37 5.81 -20.13 -0.12 -5.48 16 25 C -0.07 -1.91 9.61 22.56 0.22 -1.69 16 26 C -0.13 -2.91 10.04 22.23 0.22 -2.68 16 27 C -0.09 -2.22 10.03 22.31 0.22 -2.00 16 28 C -0.12 -3.96 8.47 22.30 0.19 -3.77 16 29 C -0.02 -0.55 5.23 -19.61 -0.10 -0.65 16 30 H 0.13 1.06 8.14 -2.38 -0.02 1.04 16 31 H 0.07 0.92 8.13 -2.39 -0.02 0.90 16 32 H 0.06 0.92 8.13 -2.39 -0.02 0.90 16 33 H 0.11 2.99 8.14 -2.39 -0.02 2.97 16 34 H 0.12 2.61 7.02 -2.39 -0.02 2.60 16 35 H 0.09 2.50 5.67 -2.39 -0.01 2.49 16 36 H 0.08 2.72 8.00 -2.39 -0.02 2.70 16 37 H 0.27 15.72 8.31 -92.71 -0.77 14.95 16 38 H 0.05 1.68 8.13 -2.39 -0.02 1.66 16 39 H 0.10 2.50 7.22 -2.39 -0.02 2.48 16 40 H 0.11 2.10 8.14 -2.39 -0.02 2.08 16 41 H 0.14 2.05 8.14 -2.39 -0.02 2.03 16 42 H 0.14 3.25 7.72 -2.91 -0.02 3.22 16 43 H 0.16 2.44 8.06 -2.91 -0.02 2.42 16 44 H 0.15 3.03 8.06 -2.91 -0.02 3.00 16 45 H 0.11 4.00 7.01 -2.91 -0.02 3.98 16 Total: -1.00 -76.72 370.22 6.40 -70.32 By element: Atomic # 1 Polarization: 14.73 SS G_CDS: 0.95 Total: 15.68 kcal Atomic # 6 Polarization: 2.92 SS G_CDS: 5.02 Total: 7.95 kcal Atomic # 7 Polarization: -74.69 SS G_CDS: -1.01 Total: -75.70 kcal Atomic # 8 Polarization: -68.04 SS G_CDS: -0.28 Total: -68.33 kcal Atomic # 14 Polarization: 48.36 SS G_CDS: 1.72 Total: 50.08 kcal Total: -76.72 6.40 -70.32 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000871343849.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -68.318 kcal (2) G-P(sol) polarization free energy of solvation -76.722 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -145.040 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.401 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.321 kcal (6) G-S(sol) free energy of system = (1) + (5) -138.639 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.75 seconds