Wall clock time and date at job start Wed Apr 1 2020 03:43:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42908 * 1 3 3 C 1.42903 * 113.99959 * 2 1 4 4 C 1.52991 * 109.46864 * 180.02562 * 3 2 1 5 5 H 1.08997 * 110.28169 * 304.36291 * 4 3 2 6 6 C 1.54947 * 110.30816 * 182.16309 * 4 3 2 7 7 C 1.55306 * 100.94622 * 204.64016 * 6 4 3 8 8 C 1.54383 * 102.24888 * 34.13512 * 7 6 4 9 9 H 1.09005 * 109.83070 * 98.24790 * 8 7 6 10 10 C 1.52996 * 109.83092 * 219.12790 * 8 7 6 11 11 H 1.09002 * 109.68208 * 299.73968 * 10 8 7 12 12 C 1.53296 * 109.68329 * 60.25841 * 10 8 7 13 13 O 1.42957 * 109.22805 * 172.02688 * 12 10 8 14 14 C 1.42969 * 114.16350 * 297.41739 * 13 12 10 15 15 C 1.53297 * 109.22076 * 62.58205 * 14 13 12 16 16 N 1.47154 * 109.68266 * 179.22117 * 10 8 7 17 17 C 1.34767 * 120.98144 * 9.71559 * 16 10 8 18 18 O 1.21280 * 120.00079 * 5.69773 * 17 16 10 19 19 C 1.50702 * 119.99879 * 185.69926 * 17 16 10 20 20 S 1.81008 * 109.46893 * 179.97438 * 19 17 16 21 21 C 1.76203 * 99.99685 * 180.02562 * 20 19 17 22 22 H 1.07996 * 120.00337 * 359.97438 * 21 20 19 23 23 C 1.38801 * 119.99829 * 180.02562 * 21 20 19 24 24 N 1.31625 * 120.00011 * 359.97438 * 23 21 20 25 25 Si 1.86802 * 119.99931 * 179.97438 * 23 21 20 26 26 H 1.48493 * 109.47190 * 59.99983 * 25 23 21 27 27 H 1.48501 * 109.47019 * 180.02562 * 25 23 21 28 28 H 1.48507 * 109.46956 * 299.99457 * 25 23 21 29 29 O 1.43235 * 107.59096 * 338.64435 * 8 7 6 30 30 H 1.09000 * 109.47025 * 180.02562 * 1 2 3 31 31 H 1.09002 * 109.46826 * 299.99642 * 1 2 3 32 32 H 1.08998 * 109.47202 * 60.00094 * 1 2 3 33 33 H 1.09002 * 109.46573 * 60.00048 * 3 2 1 34 34 H 1.09001 * 109.46533 * 300.00342 * 3 2 1 35 35 H 1.09004 * 111.11968 * 86.72222 * 6 4 3 36 36 H 1.09000 * 111.13126 * 322.56350 * 6 4 3 37 37 H 1.08998 * 110.84875 * 275.94997 * 7 6 4 38 38 H 1.08996 * 110.84829 * 152.32586 * 7 6 4 39 39 H 1.09000 * 109.51452 * 291.95233 * 12 10 8 40 40 H 1.09002 * 109.51397 * 52.04932 * 12 10 8 41 41 H 1.08996 * 109.51123 * 182.49984 * 14 13 12 42 42 H 1.08991 * 109.51396 * 302.65574 * 14 13 12 43 43 H 1.09002 * 109.68492 * 67.41879 * 15 14 13 44 44 H 1.08996 * 109.68246 * 187.97371 * 15 14 13 45 45 H 1.08995 * 109.47247 * 299.99341 * 19 17 16 46 46 H 1.08999 * 109.47187 * 60.00086 * 19 17 16 47 47 H 0.96997 * 120.00267 * 180.02562 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4291 0.0000 0.0000 3 6 2.0103 1.3055 0.0000 4 6 3.5354 1.1846 -0.0006 5 1 3.8668 0.5794 0.8431 6 6 4.1863 2.5897 0.0542 7 6 5.5695 2.2993 -0.5894 8 6 5.2238 1.2168 -1.6344 9 1 5.1119 1.6742 -2.6175 10 6 6.3319 0.1626 -1.6758 11 1 7.2758 0.6328 -1.9516 12 6 6.4672 -0.4985 -0.2993 13 8 7.3694 -1.6033 -0.3944 14 6 6.9287 -2.6453 -1.2685 15 6 6.8171 -2.0941 -2.6946 16 7 5.9902 -0.8772 -2.6593 17 6 4.9500 -0.7204 -3.5017 18 8 4.3438 0.3297 -3.5278 19 6 4.5400 -1.8500 -4.4112 20 16 3.1224 -1.3346 -5.4118 21 6 2.8621 -2.8020 -6.3520 22 1 3.5020 -3.6592 -6.2034 23 6 1.8353 -2.8557 -7.2844 24 7 1.0557 -1.8108 -7.4659 25 14 1.5598 -4.4111 -8.2817 26 1 1.2710 -5.5426 -7.3644 27 1 0.4104 -4.2126 -9.2008 28 1 2.7792 -4.7141 -9.0732 29 8 3.9895 0.6090 -1.2360 30 1 -0.3633 -1.0277 0.0005 31 1 -0.3633 0.5138 0.8900 32 1 -0.3633 0.5138 -0.8900 33 1 1.6886 1.8463 0.8900 34 1 1.6886 1.8463 -0.8900 35 1 4.2959 2.9319 1.0833 36 1 3.6203 3.3083 -0.5386 37 1 6.2690 1.9133 0.1521 38 1 5.9677 3.1917 -1.0724 39 1 6.8539 0.2268 0.4165 40 1 5.4909 -0.8522 0.0323 41 1 7.6476 -3.4643 -1.2500 42 1 5.9544 -3.0076 -0.9409 43 1 7.8101 -1.8517 -3.0733 44 1 6.3490 -2.8375 -3.3399 45 1 5.3719 -2.1096 -5.0657 46 1 4.2648 -2.7176 -3.8116 47 1 0.3379 -1.8485 -8.1172 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000886454842.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:43:52 Heat of formation + Delta-G solvation = -142.454968 kcal Electronic energy + Delta-G solvation = -30177.393718 eV Core-core repulsion = 26066.999211 eV Total energy + Delta-G solvation = -4110.394507 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 345.149 amu Computer time = 0.57 seconds Orbital eigenvalues (eV) -40.80606 -38.98862 -37.97666 -37.34450 -34.49584 -32.86371 -32.38231 -32.10320 -29.88114 -29.32835 -27.38631 -26.53178 -25.47006 -25.17327 -23.43281 -22.18647 -21.36600 -20.90502 -18.98439 -17.65258 -17.28808 -16.81113 -16.46296 -16.14912 -15.76893 -15.59076 -15.48810 -15.27078 -15.06275 -14.76612 -14.68143 -14.33056 -13.95623 -13.75173 -13.36646 -13.18868 -12.95607 -12.57255 -12.47347 -12.23110 -12.16614 -11.79649 -11.64199 -11.51570 -11.26748 -11.21325 -11.05037 -11.02716 -11.00733 -10.93066 -10.74549 -10.71302 -10.18382 -9.75925 -9.57002 -9.47220 -9.01331 -8.47738 -8.28166 -8.14839 -6.41874 -6.16916 -3.85719 2.89065 3.21693 3.26054 3.28038 3.31278 3.62217 3.66145 3.75207 3.96550 4.25278 4.39450 4.56712 4.67470 4.81979 4.91226 4.92343 4.99580 5.12506 5.15968 5.16855 5.18464 5.23512 5.28185 5.38208 5.40820 5.42635 5.49068 5.53940 5.56893 5.59361 5.65666 5.67731 5.76088 5.77788 5.81021 5.88527 5.96915 6.05427 6.18650 6.31951 6.68089 6.96605 7.21881 7.39645 7.63238 7.66872 8.39440 8.74150 9.28301 10.90417 Molecular weight = 345.15amu Principal moments of inertia in cm(-1) A = 0.010297 B = 0.003878 C = 0.003184 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2718.567924 B = 7219.330343 C = 8792.607960 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.033 3.967 2 O -0.380 6.380 3 C 0.065 3.935 4 C 0.076 3.924 5 H 0.068 0.932 6 C -0.145 4.145 7 C -0.160 4.160 8 C 0.079 3.921 9 H 0.124 0.876 10 C 0.108 3.892 11 H 0.083 0.917 12 C 0.049 3.951 13 O -0.382 6.382 14 C 0.047 3.953 15 C 0.076 3.924 16 N -0.619 5.619 17 C 0.543 3.457 18 O -0.490 6.490 19 C -0.150 4.150 20 S -0.055 6.055 21 C -0.535 4.535 22 H 0.070 0.930 23 C 0.075 3.925 24 N -0.869 5.869 25 Si 0.916 3.084 26 H -0.274 1.274 27 H -0.283 1.283 28 H -0.274 1.274 29 O -0.330 6.330 30 H 0.085 0.915 31 H 0.034 0.966 32 H 0.044 0.956 33 H 0.054 0.946 34 H 0.059 0.941 35 H 0.081 0.919 36 H 0.082 0.918 37 H 0.075 0.925 38 H 0.084 0.916 39 H 0.099 0.901 40 H 0.065 0.935 41 H 0.104 0.896 42 H 0.058 0.942 43 H 0.073 0.927 44 H 0.098 0.902 45 H 0.084 0.916 46 H 0.086 0.914 47 H 0.268 0.732 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.845 5.794 18.164 21.457 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.064 4.064 2 O -0.299 6.299 3 C -0.012 4.012 4 C 0.018 3.982 5 H 0.086 0.914 6 C -0.183 4.183 7 C -0.198 4.198 8 C 0.021 3.979 9 H 0.141 0.859 10 C 0.003 3.997 11 H 0.101 0.899 12 C -0.028 4.028 13 O -0.301 6.301 14 C -0.031 4.031 15 C -0.048 4.048 16 N -0.357 5.357 17 C 0.331 3.669 18 O -0.363 6.363 19 C -0.300 4.300 20 S 0.172 5.828 21 C -0.683 4.683 22 H 0.089 0.911 23 C -0.135 4.135 24 N -0.504 5.504 25 Si 0.743 3.257 26 H -0.200 1.200 27 H -0.208 1.208 28 H -0.200 1.200 29 O -0.248 6.248 30 H 0.104 0.896 31 H 0.053 0.947 32 H 0.063 0.937 33 H 0.072 0.928 34 H 0.077 0.923 35 H 0.099 0.901 36 H 0.100 0.900 37 H 0.093 0.907 38 H 0.102 0.898 39 H 0.117 0.883 40 H 0.083 0.917 41 H 0.122 0.878 42 H 0.077 0.923 43 H 0.091 0.909 44 H 0.116 0.884 45 H 0.102 0.898 46 H 0.104 0.896 47 H 0.078 0.922 Dipole moment (debyes) X Y Z Total from point charges 8.941 7.093 17.984 21.300 hybrid contribution 0.233 -1.970 -0.600 2.072 sum 9.174 5.123 17.384 20.313 Atomic orbital electron populations 1.22727 0.81152 1.02872 0.99617 1.87956 1.19510 1.27095 1.95290 1.22647 0.92551 0.85613 1.00353 1.22945 0.92805 0.93159 0.89268 0.91377 1.23190 0.96075 0.97214 1.01775 1.23376 0.97499 1.00097 0.98837 1.23258 0.83359 0.90967 1.00274 0.85885 1.22254 0.98590 0.89578 0.89249 0.89936 1.23088 0.94676 0.88931 0.96097 1.87912 1.46535 1.29875 1.65741 1.22997 1.00952 0.90116 0.89029 1.22377 0.96107 0.88043 0.98276 1.48040 1.31821 1.18993 1.36829 1.20169 0.78130 0.89118 0.79455 1.90635 1.52182 1.27274 1.66251 1.23558 1.05586 0.99751 1.01122 1.85360 1.32355 1.21084 1.43976 1.22844 1.19633 1.00559 1.25298 0.91146 1.24960 0.94899 0.97187 0.96416 1.70007 1.17713 1.29001 1.33676 0.86262 0.77890 0.82079 0.79497 1.19960 1.20847 1.19976 1.88813 1.37598 1.61139 1.37272 0.89623 0.94717 0.93697 0.92828 0.92269 0.90081 0.89970 0.90663 0.89770 0.88323 0.91674 0.87836 0.92323 0.90853 0.88358 0.89751 0.89576 0.92230 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.42 11.01 101.05 1.11 1.53 16 2 O -0.38 -6.08 10.69 -36.86 -0.39 -6.47 16 3 C 0.07 0.86 5.65 37.15 0.21 1.07 16 4 C 0.08 0.98 3.53 -25.71 -0.09 0.89 16 5 H 0.07 0.83 7.84 -51.93 -0.41 0.42 16 6 C -0.14 -1.37 6.57 -24.48 -0.16 -1.53 16 7 C -0.16 -1.53 6.35 -24.78 -0.16 -1.69 16 8 C 0.08 1.11 2.34 -26.01 -0.06 1.05 16 9 H 0.12 2.09 5.92 -51.98 -0.31 1.78 16 10 C 0.11 1.41 2.99 -67.42 -0.20 1.21 16 11 H 0.08 0.98 8.14 -51.93 -0.42 0.56 16 12 C 0.05 0.58 5.80 37.31 0.22 0.80 16 13 O -0.38 -4.69 10.74 -35.23 -0.38 -5.06 16 14 C 0.05 0.51 6.99 37.31 0.26 0.77 16 15 C 0.08 0.92 6.55 -3.52 -0.02 0.89 16 16 N -0.62 -9.48 3.01 -164.73 -0.50 -9.97 16 17 C 0.54 10.64 7.16 -10.99 -0.08 10.57 16 18 O -0.49 -10.89 10.86 -18.24 -0.20 -11.09 16 19 C -0.15 -3.16 4.53 36.01 0.16 -3.00 16 20 S -0.05 -1.51 20.57 -107.50 -2.21 -3.72 16 21 C -0.54 -15.47 9.50 30.94 0.29 -15.18 16 22 H 0.07 1.93 7.80 -52.49 -0.41 1.52 16 23 C 0.07 2.15 5.49 -17.43 -0.10 2.05 16 24 N -0.87 -26.45 13.22 55.49 0.73 -25.71 16 25 Si 0.92 21.65 29.55 -169.99 -5.02 16.63 16 26 H -0.27 -6.33 7.11 56.52 0.40 -5.93 16 27 H -0.28 -6.56 7.11 56.52 0.40 -6.16 16 28 H -0.27 -6.31 7.11 56.52 0.40 -5.91 16 29 O -0.33 -5.51 7.79 -61.40 -0.48 -5.99 16 30 H 0.09 1.01 8.14 -51.93 -0.42 0.59 16 31 H 0.03 0.34 8.14 -51.93 -0.42 -0.08 16 32 H 0.04 0.58 8.14 -51.93 -0.42 0.15 16 33 H 0.05 0.54 8.14 -51.93 -0.42 0.12 16 34 H 0.06 0.84 8.14 -51.93 -0.42 0.42 16 35 H 0.08 0.57 8.14 -51.93 -0.42 0.15 16 36 H 0.08 0.79 8.06 -51.93 -0.42 0.38 16 37 H 0.07 0.60 5.92 -51.93 -0.31 0.29 16 38 H 0.08 0.71 8.14 -51.93 -0.42 0.28 16 39 H 0.10 0.92 6.44 -51.93 -0.33 0.58 16 40 H 0.07 0.87 6.96 -51.93 -0.36 0.51 16 41 H 0.10 0.86 8.14 -51.93 -0.42 0.44 16 42 H 0.06 0.69 8.14 -51.93 -0.42 0.27 16 43 H 0.07 0.79 8.14 -51.93 -0.42 0.36 16 44 H 0.10 1.17 6.04 -51.93 -0.31 0.86 16 45 H 0.08 1.65 7.79 -51.92 -0.40 1.24 16 46 H 0.09 1.75 7.89 -51.92 -0.41 1.34 16 47 H 0.27 7.60 8.31 -40.82 -0.34 7.26 16 LS Contribution 380.75 15.07 5.74 5.74 Total: -1.00 -35.99 380.75 -8.78 -44.77 By element: Atomic # 1 Polarization: 8.91 SS G_CDS: -7.46 Total: 1.45 kcal Atomic # 6 Polarization: -1.96 SS G_CDS: 1.39 Total: -0.58 kcal Atomic # 7 Polarization: -35.92 SS G_CDS: 0.24 Total: -35.69 kcal Atomic # 8 Polarization: -27.16 SS G_CDS: -1.45 Total: -28.61 kcal Atomic # 14 Polarization: 21.65 SS G_CDS: -5.02 Total: 16.63 kcal Atomic # 16 Polarization: -1.51 SS G_CDS: -2.21 Total: -3.72 kcal Total LS contribution 5.74 Total: 5.74 kcal Total: -35.99 -8.78 -44.77 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000886454842.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -97.682 kcal (2) G-P(sol) polarization free energy of solvation -35.992 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -133.674 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.781 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.773 kcal (6) G-S(sol) free energy of system = (1) + (5) -142.455 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.57 seconds