Wall clock time and date at job start Wed Apr 1 2020 03:43:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42908 * 1 3 3 C 1.42903 * 113.99959 * 2 1 4 4 C 1.52991 * 109.46864 * 180.02562 * 3 2 1 5 5 H 1.08997 * 110.28169 * 304.36291 * 4 3 2 6 6 C 1.54947 * 110.30816 * 182.16309 * 4 3 2 7 7 C 1.55306 * 100.94622 * 204.64016 * 6 4 3 8 8 C 1.54383 * 102.24888 * 34.13512 * 7 6 4 9 9 H 1.09005 * 109.83070 * 98.24790 * 8 7 6 10 10 C 1.52996 * 109.83092 * 219.12790 * 8 7 6 11 11 H 1.09002 * 109.68208 * 299.73968 * 10 8 7 12 12 C 1.53296 * 109.68329 * 60.25841 * 10 8 7 13 13 O 1.42957 * 109.22805 * 172.02688 * 12 10 8 14 14 C 1.42969 * 114.16350 * 297.41739 * 13 12 10 15 15 C 1.53297 * 109.22076 * 62.58205 * 14 13 12 16 16 N 1.47154 * 109.68266 * 179.22117 * 10 8 7 17 17 C 1.34767 * 120.98144 * 9.71559 * 16 10 8 18 18 O 1.21280 * 120.00079 * 5.69773 * 17 16 10 19 19 C 1.50702 * 119.99879 * 185.69926 * 17 16 10 20 20 S 1.81008 * 109.46893 * 179.97438 * 19 17 16 21 21 C 1.76203 * 99.99685 * 180.02562 * 20 19 17 22 22 H 1.07996 * 120.00337 * 359.97438 * 21 20 19 23 23 C 1.38801 * 119.99829 * 180.02562 * 21 20 19 24 24 N 1.31625 * 120.00011 * 359.97438 * 23 21 20 25 25 Si 1.86802 * 119.99931 * 179.97438 * 23 21 20 26 26 H 1.48493 * 109.47190 * 59.99983 * 25 23 21 27 27 H 1.48501 * 109.47019 * 180.02562 * 25 23 21 28 28 H 1.48507 * 109.46956 * 299.99457 * 25 23 21 29 29 O 1.43235 * 107.59096 * 338.64435 * 8 7 6 30 30 H 1.09000 * 109.47025 * 180.02562 * 1 2 3 31 31 H 1.09002 * 109.46826 * 299.99642 * 1 2 3 32 32 H 1.08998 * 109.47202 * 60.00094 * 1 2 3 33 33 H 1.09002 * 109.46573 * 60.00048 * 3 2 1 34 34 H 1.09001 * 109.46533 * 300.00342 * 3 2 1 35 35 H 1.09004 * 111.11968 * 86.72222 * 6 4 3 36 36 H 1.09000 * 111.13126 * 322.56350 * 6 4 3 37 37 H 1.08998 * 110.84875 * 275.94997 * 7 6 4 38 38 H 1.08996 * 110.84829 * 152.32586 * 7 6 4 39 39 H 1.09000 * 109.51452 * 291.95233 * 12 10 8 40 40 H 1.09002 * 109.51397 * 52.04932 * 12 10 8 41 41 H 1.08996 * 109.51123 * 182.49984 * 14 13 12 42 42 H 1.08991 * 109.51396 * 302.65574 * 14 13 12 43 43 H 1.09002 * 109.68492 * 67.41879 * 15 14 13 44 44 H 1.08996 * 109.68246 * 187.97371 * 15 14 13 45 45 H 1.08995 * 109.47247 * 299.99341 * 19 17 16 46 46 H 1.08999 * 109.47187 * 60.00086 * 19 17 16 47 47 H 0.96997 * 120.00267 * 180.02562 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4291 0.0000 0.0000 3 6 2.0103 1.3055 0.0000 4 6 3.5354 1.1846 -0.0006 5 1 3.8668 0.5794 0.8431 6 6 4.1863 2.5897 0.0542 7 6 5.5695 2.2993 -0.5894 8 6 5.2238 1.2168 -1.6344 9 1 5.1119 1.6742 -2.6175 10 6 6.3319 0.1626 -1.6758 11 1 7.2758 0.6328 -1.9516 12 6 6.4672 -0.4985 -0.2993 13 8 7.3694 -1.6033 -0.3944 14 6 6.9287 -2.6453 -1.2685 15 6 6.8171 -2.0941 -2.6946 16 7 5.9902 -0.8772 -2.6593 17 6 4.9500 -0.7204 -3.5017 18 8 4.3438 0.3297 -3.5278 19 6 4.5400 -1.8500 -4.4112 20 16 3.1224 -1.3346 -5.4118 21 6 2.8621 -2.8020 -6.3520 22 1 3.5020 -3.6592 -6.2034 23 6 1.8353 -2.8557 -7.2844 24 7 1.0557 -1.8108 -7.4659 25 14 1.5598 -4.4111 -8.2817 26 1 1.2710 -5.5426 -7.3644 27 1 0.4104 -4.2126 -9.2008 28 1 2.7792 -4.7141 -9.0732 29 8 3.9895 0.6090 -1.2360 30 1 -0.3633 -1.0277 0.0005 31 1 -0.3633 0.5138 0.8900 32 1 -0.3633 0.5138 -0.8900 33 1 1.6886 1.8463 0.8900 34 1 1.6886 1.8463 -0.8900 35 1 4.2959 2.9319 1.0833 36 1 3.6203 3.3083 -0.5386 37 1 6.2690 1.9133 0.1521 38 1 5.9677 3.1917 -1.0724 39 1 6.8539 0.2268 0.4165 40 1 5.4909 -0.8522 0.0323 41 1 7.6476 -3.4643 -1.2500 42 1 5.9544 -3.0076 -0.9409 43 1 7.8101 -1.8517 -3.0733 44 1 6.3490 -2.8375 -3.3399 45 1 5.3719 -2.1096 -5.0657 46 1 4.2648 -2.7176 -3.8116 47 1 0.3379 -1.8485 -8.1172 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000886454842.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:43:51 Heat of formation + Delta-G solvation = -167.998393 kcal Electronic energy + Delta-G solvation = -30178.501364 eV Core-core repulsion = 26066.999211 eV Total energy + Delta-G solvation = -4111.502153 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 345.149 amu Computer time = 0.63 seconds Orbital eigenvalues (eV) -41.93770 -40.07419 -39.19641 -38.45113 -35.72793 -34.58872 -33.91285 -33.04952 -30.87680 -30.82139 -28.55445 -27.64742 -27.54327 -26.23027 -24.39337 -23.29777 -22.28284 -21.95320 -20.42910 -19.48299 -18.33985 -18.07177 -17.56661 -17.22037 -16.90116 -16.86870 -16.73568 -16.66517 -16.27191 -16.18566 -15.89873 -15.71967 -15.39000 -14.95202 -14.59429 -14.48135 -14.20268 -14.12420 -13.51288 -13.34045 -13.19721 -13.16493 -13.07339 -12.87583 -12.64029 -12.54693 -12.42446 -12.29928 -12.21344 -11.97363 -11.86157 -11.72992 -11.63392 -11.21214 -11.13285 -10.68082 -10.62731 -10.25525 -9.79540 -9.47515 -8.64711 -8.34579 -6.11770 1.24619 1.42507 1.43715 1.53632 1.70253 2.03678 2.27689 2.75701 2.78989 2.99073 3.00211 3.24615 3.53994 3.56884 3.73669 3.88658 3.96157 3.98037 4.04971 4.14987 4.18266 4.22096 4.23351 4.29653 4.35591 4.42626 4.46346 4.48006 4.52219 4.56484 4.59225 4.71038 4.78549 4.79820 4.83825 4.88321 4.92440 5.02793 5.11335 5.32673 5.40133 5.54955 6.04752 6.18554 6.18822 6.30901 6.43074 7.06177 7.28662 8.74474 Molecular weight = 345.15amu Principal moments of inertia in cm(-1) A = 0.010297 B = 0.003878 C = 0.003184 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2718.567924 B = 7219.330343 C = 8792.607960 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.029 3.971 2 O -0.415 6.415 3 C 0.061 3.939 4 C 0.067 3.933 5 H 0.076 0.924 6 C -0.135 4.135 7 C -0.148 4.148 8 C 0.075 3.925 9 H 0.082 0.918 10 C 0.104 3.896 11 H 0.102 0.898 12 C 0.059 3.941 13 O -0.385 6.385 14 C 0.049 3.951 15 C 0.068 3.932 16 N -0.613 5.613 17 C 0.538 3.462 18 O -0.525 6.525 19 C -0.124 4.124 20 S -0.141 6.141 21 C -0.549 4.549 22 H 0.079 0.921 23 C 0.016 3.984 24 N -0.911 5.911 25 Si 0.997 3.003 26 H -0.263 1.263 27 H -0.277 1.277 28 H -0.261 1.261 29 O -0.371 6.371 30 H 0.087 0.913 31 H 0.066 0.934 32 H 0.032 0.968 33 H 0.089 0.911 34 H 0.035 0.965 35 H 0.116 0.884 36 H 0.074 0.926 37 H 0.101 0.899 38 H 0.097 0.903 39 H 0.131 0.869 40 H 0.045 0.955 41 H 0.137 0.863 42 H 0.045 0.955 43 H 0.096 0.904 44 H 0.097 0.903 45 H 0.102 0.898 46 H 0.093 0.907 47 H 0.271 0.729 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 12.060 4.931 20.025 23.890 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.067 4.067 2 O -0.335 6.335 3 C -0.015 4.015 4 C 0.009 3.991 5 H 0.094 0.906 6 C -0.172 4.172 7 C -0.185 4.185 8 C 0.017 3.983 9 H 0.100 0.900 10 C 0.001 3.999 11 H 0.119 0.881 12 C -0.019 4.019 13 O -0.303 6.303 14 C -0.028 4.028 15 C -0.055 4.055 16 N -0.349 5.349 17 C 0.326 3.674 18 O -0.401 6.401 19 C -0.275 4.275 20 S 0.087 5.913 21 C -0.697 4.697 22 H 0.097 0.903 23 C -0.189 4.189 24 N -0.548 5.548 25 Si 0.818 3.182 26 H -0.188 1.188 27 H -0.202 1.202 28 H -0.185 1.185 29 O -0.290 6.290 30 H 0.106 0.894 31 H 0.084 0.916 32 H 0.051 0.949 33 H 0.107 0.893 34 H 0.054 0.946 35 H 0.135 0.865 36 H 0.093 0.907 37 H 0.120 0.880 38 H 0.116 0.884 39 H 0.149 0.851 40 H 0.063 0.937 41 H 0.154 0.846 42 H 0.064 0.936 43 H 0.114 0.886 44 H 0.116 0.884 45 H 0.120 0.880 46 H 0.111 0.889 47 H 0.080 0.920 Dipole moment (debyes) X Y Z Total from point charges 11.199 6.223 19.878 23.650 hybrid contribution -0.407 -1.677 -1.106 2.050 sum 10.792 4.546 18.773 22.126 Atomic orbital electron populations 1.22854 0.79958 1.03403 1.00534 1.87902 1.21128 1.28955 1.95498 1.22836 0.93167 0.84687 1.00838 1.23202 0.92501 0.95168 0.88200 0.90573 1.23188 0.95328 0.94977 1.03720 1.23344 0.98085 0.99063 0.98045 1.23105 0.83092 0.92194 0.99862 0.90001 1.22501 0.98860 0.89075 0.89489 0.88057 1.23078 0.94030 0.89329 0.95434 1.87916 1.46546 1.30043 1.65833 1.23095 1.01405 0.90572 0.87719 1.22677 0.96440 0.86823 0.99521 1.48020 1.30478 1.20558 1.35874 1.19908 0.79283 0.88115 0.80105 1.90663 1.53796 1.28183 1.67440 1.23377 1.02845 1.00585 1.00726 1.85513 1.36779 1.22971 1.46068 1.23175 1.20225 1.00619 1.25651 0.90279 1.26099 0.94255 1.01052 0.97505 1.70176 1.18419 1.31624 1.34563 0.85034 0.78275 0.77146 0.77730 1.18777 1.20209 1.18540 1.88778 1.38947 1.62250 1.39029 0.89402 0.91574 0.94918 0.89277 0.94617 0.86546 0.90718 0.88031 0.88419 0.85146 0.93659 0.84562 0.93635 0.88635 0.88438 0.88011 0.88908 0.92006 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.74 11.01 113.37 1.25 1.99 16 2 O -0.42 -13.72 10.69 -147.42 -1.58 -15.30 16 3 C 0.06 1.64 5.65 71.98 0.41 2.05 16 4 C 0.07 1.68 3.53 31.26 0.11 1.79 16 5 H 0.08 1.76 7.84 -2.39 -0.02 1.74 16 6 C -0.13 -2.29 6.57 32.05 0.21 -2.08 16 7 C -0.15 -2.50 6.35 31.86 0.20 -2.29 16 8 C 0.08 2.11 2.34 31.06 0.07 2.18 16 9 H 0.08 2.95 5.92 -3.31 -0.02 2.93 16 10 C 0.10 2.59 2.99 44.96 0.13 2.72 16 11 H 0.10 2.16 8.14 -2.39 -0.02 2.14 16 12 C 0.06 1.23 5.80 72.08 0.42 1.65 16 13 O -0.39 -8.26 10.74 -148.98 -1.60 -9.86 16 14 C 0.05 0.96 6.99 72.08 0.50 1.46 16 15 C 0.07 1.52 6.55 86.35 0.57 2.08 16 16 N -0.61 -18.46 3.01 -793.49 -2.39 -20.85 16 17 C 0.54 21.77 7.16 87.66 0.63 22.40 16 18 O -0.52 -24.72 10.86 19.72 0.21 -24.51 16 19 C -0.12 -5.39 4.53 71.24 0.32 -5.06 16 20 S -0.14 -8.15 20.57 -56.49 -1.16 -9.31 16 21 C -0.55 -32.42 9.50 67.95 0.65 -31.77 16 22 H 0.08 4.36 7.80 -2.91 -0.02 4.33 16 23 C 0.02 0.91 5.49 84.86 0.47 1.38 16 24 N -0.91 -57.17 13.22 21.65 0.29 -56.88 16 25 Si 1.00 44.54 29.55 68.60 2.03 46.57 16 26 H -0.26 -11.20 7.11 99.48 0.71 -10.50 16 27 H -0.28 -12.00 7.11 99.48 0.71 -11.29 16 28 H -0.26 -11.01 7.11 99.48 0.71 -10.31 16 29 O -0.37 -12.79 7.79 -123.96 -0.97 -13.75 16 30 H 0.09 2.16 8.14 -2.39 -0.02 2.14 16 31 H 0.07 1.26 8.14 -2.39 -0.02 1.24 16 32 H 0.03 0.89 8.14 -2.39 -0.02 0.88 16 33 H 0.09 1.68 8.14 -2.39 -0.02 1.66 16 34 H 0.04 1.09 8.14 -2.39 -0.02 1.07 16 35 H 0.12 1.18 8.14 -2.38 -0.02 1.16 16 36 H 0.07 1.38 8.06 -2.39 -0.02 1.36 16 37 H 0.10 1.18 5.92 -2.39 -0.01 1.17 16 38 H 0.10 1.41 8.14 -2.39 -0.02 1.39 16 39 H 0.13 1.89 6.44 -2.39 -0.02 1.87 16 40 H 0.05 1.16 6.96 -2.39 -0.02 1.14 16 41 H 0.14 1.78 8.14 -2.39 -0.02 1.76 16 42 H 0.05 1.02 8.14 -2.39 -0.02 1.00 16 43 H 0.10 1.77 8.14 -2.39 -0.02 1.75 16 44 H 0.10 2.18 6.04 -2.39 -0.01 2.17 16 45 H 0.10 3.99 7.79 -2.40 -0.02 3.98 16 46 H 0.09 3.85 7.89 -2.40 -0.02 3.83 16 47 H 0.27 15.77 8.31 -92.71 -0.77 15.00 16 Total: -1.00 -83.51 380.75 1.73 -81.78 By element: Atomic # 1 Polarization: 22.65 SS G_CDS: 0.96 Total: 23.61 kcal Atomic # 6 Polarization: -7.44 SS G_CDS: 5.93 Total: -1.50 kcal Atomic # 7 Polarization: -75.63 SS G_CDS: -2.10 Total: -77.73 kcal Atomic # 8 Polarization: -59.49 SS G_CDS: -3.93 Total: -63.42 kcal Atomic # 14 Polarization: 44.54 SS G_CDS: 2.03 Total: 46.57 kcal Atomic # 16 Polarization: -8.15 SS G_CDS: -1.16 Total: -9.31 kcal Total: -83.51 1.73 -81.78 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000886454842.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -86.216 kcal (2) G-P(sol) polarization free energy of solvation -83.509 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -169.725 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.727 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -81.783 kcal (6) G-S(sol) free energy of system = (1) + (5) -167.998 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.63 seconds