Wall clock time and date at job start Wed Apr 1 2020 03:18:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 O 1.45193 * 109.47237 * 2 1 4 4 C 1.34227 * 116.99963 * 179.97438 * 3 2 1 5 5 O 1.20825 * 119.99905 * 359.97438 * 4 3 2 6 6 C 1.50699 * 120.00008 * 179.97438 * 4 3 2 7 7 C 1.52999 * 109.54501 * 179.97438 * 6 4 3 8 8 H 1.09004 * 109.47434 * 180.02562 * 7 6 4 9 9 C 1.52997 * 109.47114 * 299.99857 * 7 6 4 10 10 N 1.46498 * 109.46963 * 59.99650 * 7 6 4 11 11 C 1.34777 * 119.99828 * 154.72290 * 10 7 6 12 12 O 1.21283 * 120.00222 * 0.28168 * 11 10 7 13 13 C 1.50703 * 120.00290 * 180.27728 * 11 10 7 14 14 S 1.81000 * 109.47389 * 180.02562 * 13 11 10 15 15 C 1.76198 * 99.99715 * 179.97438 * 14 13 11 16 16 H 1.08001 * 120.00516 * 0.02562 * 15 14 13 17 17 C 1.38803 * 119.99710 * 179.97438 * 15 14 13 18 18 N 1.31634 * 120.00163 * 0.02562 * 17 15 14 19 19 Si 1.86799 * 120.00011 * 179.97438 * 17 15 14 20 20 H 1.48505 * 109.46661 * 60.00586 * 19 17 15 21 21 H 1.48501 * 109.47391 * 180.02562 * 19 17 15 22 22 H 1.48497 * 109.47355 * 300.00441 * 19 17 15 23 23 C 1.53174 * 109.54188 * 300.17600 * 6 4 3 24 24 C 1.53102 * 109.16007 * 63.06563 * 23 6 4 25 25 O 1.42903 * 109.48763 * 57.47488 * 24 23 6 26 26 C 1.42908 * 114.09592 * 298.88940 * 25 24 23 27 27 C 1.53085 * 109.41313 * 61.15788 * 26 25 24 28 28 H 1.08994 * 109.47455 * 300.00162 * 1 2 3 29 29 H 1.08999 * 109.46486 * 60.00363 * 1 2 3 30 30 H 1.08999 * 109.47040 * 179.97438 * 1 2 3 31 31 H 1.08998 * 109.47026 * 239.99645 * 2 1 3 32 32 H 1.09008 * 109.46513 * 119.99827 * 2 1 3 33 33 H 1.08997 * 109.47293 * 179.97438 * 9 7 6 34 34 H 1.09003 * 109.47189 * 300.00067 * 9 7 6 35 35 H 1.09009 * 109.47238 * 59.99946 * 9 7 6 36 36 H 0.97001 * 120.00384 * 335.00737 * 10 7 6 37 37 H 1.08998 * 109.46954 * 300.00581 * 13 11 10 38 38 H 1.09002 * 109.46946 * 59.99717 * 13 11 10 39 39 H 0.96991 * 119.99795 * 179.97438 * 18 17 15 40 40 H 1.09008 * 109.52157 * 182.88270 * 23 6 4 41 41 H 1.08998 * 109.52654 * 303.06882 * 23 6 4 42 42 H 1.09002 * 109.40563 * 297.49515 * 24 23 6 43 43 H 1.09000 * 109.49400 * 177.51094 * 24 23 6 44 44 H 1.09005 * 109.47772 * 301.17837 * 26 25 24 45 45 H 1.08998 * 109.49055 * 181.14942 * 26 25 24 46 46 H 1.09001 * 109.52270 * 182.48058 * 27 26 25 47 47 H 1.09000 * 109.57269 * 62.33144 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 8 2.0141 1.3689 0.0000 4 6 3.3448 1.5447 0.0005 5 8 4.0807 0.5865 0.0015 6 6 3.9208 2.9373 0.0000 7 6 5.4488 2.8591 0.0014 8 1 5.8642 3.8669 0.0015 9 6 5.9202 2.1138 1.2516 10 7 5.9022 2.1435 -1.1938 11 6 7.1356 2.3703 -1.6876 12 8 7.8720 3.1630 -1.1396 13 6 7.5999 1.6388 -2.9207 14 16 9.2857 2.1552 -3.3297 15 6 9.5664 1.1735 -4.7657 16 1 8.7940 0.5101 -5.1259 17 6 10.7799 1.2535 -5.4348 18 7 11.7212 2.0624 -4.9962 19 14 11.0778 0.2122 -6.9567 20 1 10.0726 0.5543 -7.9949 21 1 12.4415 0.4796 -7.4804 22 1 10.9564 -1.2253 -6.6046 23 6 3.4468 3.6873 -1.2486 24 6 1.9233 3.8314 -1.2001 25 8 1.5467 4.5115 -0.0011 26 6 1.9220 3.8310 1.1982 27 6 3.4454 3.6889 1.2472 28 1 -0.3634 0.5138 0.8899 29 1 -0.3632 0.5138 -0.8900 30 1 -0.3633 -1.0277 -0.0005 31 1 1.8934 -0.5139 -0.8899 32 1 1.8933 -0.5139 0.8901 33 1 7.0087 2.0577 1.2524 34 1 5.5827 2.6462 2.1409 35 1 5.5048 1.1059 1.2521 36 1 5.3133 1.5095 -1.6321 37 1 7.5844 0.5651 -2.7336 38 1 6.9359 1.8721 -3.7531 39 1 12.5693 2.1181 -5.4635 40 1 3.9042 4.6764 -1.2750 41 1 3.7330 3.1288 -2.1397 42 1 1.4653 2.8423 -1.2162 43 1 1.5843 4.4030 -2.0641 44 1 1.4640 2.8419 1.2134 45 1 1.5822 4.4022 2.0621 46 1 3.7308 3.1315 2.1393 47 1 3.9037 4.6776 1.2734 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000888351353.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:18:45 Heat of formation + Delta-G solvation = -170.748934 kcal Electronic energy + Delta-G solvation = -29641.357675 eV Core-core repulsion = 25529.736250 eV Total energy + Delta-G solvation = -4111.621425 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 345.149 amu Computer time = 0.58 seconds Orbital eigenvalues (eV) -41.90148 -39.37917 -38.92284 -37.40045 -35.74987 -33.31604 -32.40919 -32.05993 -31.67250 -30.48523 -28.40443 -26.27415 -25.46569 -24.54234 -23.89773 -22.51267 -21.95582 -20.39381 -20.02347 -18.03681 -17.77938 -17.25864 -16.65690 -16.60857 -16.20456 -16.06796 -15.24661 -15.01497 -14.89102 -14.79040 -14.77534 -14.20710 -14.04707 -13.70661 -13.52376 -13.19318 -13.16372 -12.93458 -12.83110 -12.71769 -12.51062 -12.42103 -12.09304 -11.89857 -11.72763 -11.67032 -11.57101 -11.13784 -11.02631 -11.02267 -10.75871 -10.74683 -10.49332 -10.30206 -9.82861 -9.78254 -9.34548 -9.04478 -8.84800 -8.21635 -6.47423 -6.19708 -3.89907 1.79065 2.18499 3.03333 3.13703 3.24681 3.28348 3.31764 3.59470 3.70414 3.94443 4.19884 4.22495 4.26457 4.42084 4.50051 4.54063 4.57931 4.84703 4.95515 5.02960 5.08981 5.15226 5.17250 5.18346 5.26674 5.28518 5.33414 5.35194 5.39324 5.43010 5.51517 5.60047 5.62525 5.67202 5.75143 5.83782 5.92032 5.92917 6.10164 6.18060 6.38351 6.67881 6.89529 7.37195 7.61171 7.75652 8.37006 8.65514 9.25438 10.87696 Molecular weight = 345.15amu Principal moments of inertia in cm(-1) A = 0.017123 B = 0.002568 C = 0.002440 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1634.869142 B =10901.044312 C =11473.723570 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C 0.053 3.947 3 O -0.349 6.349 4 C 0.466 3.534 5 O -0.487 6.487 6 C -0.057 4.057 7 C 0.168 3.832 8 H 0.102 0.898 9 C -0.180 4.180 10 N -0.727 5.727 11 C 0.535 3.465 12 O -0.518 6.518 13 C -0.153 4.153 14 S -0.058 6.058 15 C -0.536 4.536 16 H 0.072 0.928 17 C 0.074 3.926 18 N -0.868 5.868 19 Si 0.918 3.082 20 H -0.274 1.274 21 H -0.283 1.283 22 H -0.274 1.274 23 C -0.146 4.146 24 C 0.052 3.948 25 O -0.377 6.377 26 C 0.052 3.948 27 C -0.145 4.145 28 H 0.066 0.934 29 H 0.067 0.933 30 H 0.079 0.921 31 H 0.072 0.928 32 H 0.070 0.930 33 H 0.068 0.932 34 H 0.059 0.941 35 H 0.079 0.921 36 H 0.397 0.603 37 H 0.089 0.911 38 H 0.088 0.912 39 H 0.269 0.731 40 H 0.093 0.907 41 H 0.082 0.918 42 H 0.071 0.929 43 H 0.096 0.904 44 H 0.072 0.928 45 H 0.096 0.904 46 H 0.085 0.915 47 H 0.094 0.906 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -26.592 -0.325 12.954 29.581 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C -0.020 4.020 3 O -0.266 6.266 4 C 0.309 3.691 5 O -0.373 6.373 6 C -0.059 4.059 7 C 0.063 3.937 8 H 0.120 0.880 9 C -0.238 4.238 10 N -0.382 5.382 11 C 0.321 3.679 12 O -0.393 6.393 13 C -0.304 4.304 14 S 0.168 5.832 15 C -0.684 4.684 16 H 0.090 0.910 17 C -0.136 4.136 18 N -0.503 5.503 19 Si 0.745 3.255 20 H -0.199 1.199 21 H -0.208 1.208 22 H -0.200 1.200 23 C -0.183 4.183 24 C -0.025 4.025 25 O -0.295 6.295 26 C -0.025 4.025 27 C -0.183 4.183 28 H 0.085 0.915 29 H 0.086 0.914 30 H 0.098 0.902 31 H 0.090 0.910 32 H 0.089 0.911 33 H 0.087 0.913 34 H 0.078 0.922 35 H 0.097 0.903 36 H 0.232 0.768 37 H 0.107 0.893 38 H 0.106 0.894 39 H 0.079 0.921 40 H 0.112 0.888 41 H 0.101 0.899 42 H 0.089 0.911 43 H 0.115 0.885 44 H 0.090 0.910 45 H 0.114 0.886 46 H 0.103 0.897 47 H 0.113 0.887 Dipole moment (debyes) X Y Z Total from point charges -25.065 0.918 13.842 28.648 hybrid contribution -0.612 -2.437 -1.823 3.104 sum -25.678 -1.519 12.018 28.392 Atomic orbital electron populations 1.21813 0.92499 1.03079 1.03525 1.23109 0.95476 0.80570 1.02884 1.86700 1.24360 1.31991 1.83597 1.23686 0.80746 0.92205 0.72466 1.90671 1.59801 1.42805 1.43998 1.21097 0.96118 0.89345 0.99352 1.20699 0.88418 0.98130 0.86458 0.87985 1.22505 1.03216 1.02080 0.95978 1.46056 1.16867 1.45844 1.29468 1.20272 0.80665 0.81960 0.85009 1.90691 1.53448 1.34868 1.60251 1.23530 1.06552 1.03070 0.97224 1.85357 1.05475 1.57115 1.35215 1.22835 1.03510 1.28701 1.13361 0.91030 1.24987 0.94964 0.95683 0.97930 1.70008 1.05339 1.35494 1.39491 0.86230 0.77521 0.80173 0.81607 1.19949 1.20808 1.19958 1.22297 0.97946 1.02039 0.96068 1.22838 0.92982 0.98776 0.87859 1.87927 1.79730 1.48252 1.13599 1.22823 0.92821 0.98807 0.88001 1.22322 0.98216 1.01848 0.95889 0.91494 0.91415 0.90233 0.90993 0.91122 0.91294 0.92206 0.90262 0.76803 0.89272 0.89408 0.92146 0.88798 0.89928 0.91070 0.88544 0.91050 0.88615 0.89687 0.88745 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.68 10.29 37.16 0.38 -0.29 16 2 C 0.05 0.35 6.19 37.16 0.23 0.58 16 3 O -0.35 -2.80 4.62 -39.25 -0.18 -2.98 16 4 C 0.47 4.60 5.76 36.01 0.21 4.80 16 5 O -0.49 -6.00 11.99 -18.75 -0.22 -6.22 16 6 C -0.06 -0.54 0.33 -155.48 -0.05 -0.59 16 7 C 0.17 2.07 1.76 -67.93 -0.12 1.95 16 8 H 0.10 1.37 7.57 -51.93 -0.39 0.97 16 9 C -0.18 -2.23 8.82 37.16 0.33 -1.90 16 10 N -0.73 -10.55 4.03 -53.81 -0.22 -10.77 16 11 C 0.53 10.27 7.82 -10.98 -0.09 10.19 16 12 O -0.52 -11.77 15.52 5.55 0.09 -11.68 16 13 C -0.15 -3.21 6.16 36.01 0.22 -2.98 16 14 S -0.06 -1.60 20.57 -107.50 -2.21 -3.82 16 15 C -0.54 -15.49 9.50 30.94 0.29 -15.20 16 16 H 0.07 1.96 7.80 -52.49 -0.41 1.55 16 17 C 0.07 2.12 5.49 -17.43 -0.10 2.03 16 18 N -0.87 -26.43 13.22 55.49 0.73 -25.70 16 19 Si 0.92 21.64 29.55 -169.99 -5.02 16.62 16 20 H -0.27 -6.29 7.11 56.52 0.40 -5.89 16 21 H -0.28 -6.53 7.11 56.52 0.40 -6.13 16 22 H -0.27 -6.32 7.11 56.52 0.40 -5.92 16 23 C -0.15 -1.30 4.71 -26.59 -0.13 -1.42 16 24 C 0.05 0.42 6.55 37.21 0.24 0.66 16 25 O -0.38 -3.43 10.77 -35.23 -0.38 -3.81 16 26 C 0.05 0.38 6.55 37.20 0.24 0.62 16 27 C -0.14 -1.09 4.46 -26.59 -0.12 -1.21 16 28 H 0.07 0.28 8.14 -51.93 -0.42 -0.14 16 29 H 0.07 0.30 8.14 -51.93 -0.42 -0.12 16 30 H 0.08 0.26 8.14 -51.93 -0.42 -0.17 16 31 H 0.07 0.51 8.13 -51.93 -0.42 0.08 16 32 H 0.07 0.48 8.13 -51.92 -0.42 0.06 16 33 H 0.07 1.03 8.14 -51.93 -0.42 0.60 16 34 H 0.06 0.58 6.51 -51.93 -0.34 0.25 16 35 H 0.08 1.04 5.53 -51.92 -0.29 0.75 16 36 H 0.40 5.24 6.78 -40.82 -0.28 4.97 16 37 H 0.09 1.78 8.14 -51.92 -0.42 1.36 16 38 H 0.09 1.69 8.14 -51.92 -0.42 1.26 16 39 H 0.27 7.61 8.31 -40.82 -0.34 7.27 16 40 H 0.09 0.87 8.14 -51.92 -0.42 0.45 16 41 H 0.08 0.75 7.58 -51.93 -0.39 0.36 16 42 H 0.07 0.56 5.53 -51.93 -0.29 0.27 16 43 H 0.10 0.67 8.14 -51.93 -0.42 0.25 16 44 H 0.07 0.51 5.52 -51.93 -0.29 0.22 16 45 H 0.10 0.55 8.14 -51.93 -0.42 0.12 16 46 H 0.08 0.57 6.62 -51.93 -0.34 0.23 16 47 H 0.09 0.69 8.14 -51.93 -0.42 0.27 16 LS Contribution 381.43 15.07 5.75 5.75 Total: -1.00 -35.10 381.43 -7.34 -42.44 By element: Atomic # 1 Polarization: 10.16 SS G_CDS: -7.22 Total: 2.93 kcal Atomic # 6 Polarization: -4.31 SS G_CDS: 1.55 Total: -2.76 kcal Atomic # 7 Polarization: -36.98 SS G_CDS: 0.52 Total: -36.46 kcal Atomic # 8 Polarization: -24.01 SS G_CDS: -0.70 Total: -24.71 kcal Atomic # 14 Polarization: 21.64 SS G_CDS: -5.02 Total: 16.62 kcal Atomic # 16 Polarization: -1.60 SS G_CDS: -2.21 Total: -3.82 kcal Total LS contribution 5.75 Total: 5.75 kcal Total: -35.10 -7.34 -42.44 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000888351353.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -128.309 kcal (2) G-P(sol) polarization free energy of solvation -35.102 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -163.411 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.338 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.440 kcal (6) G-S(sol) free energy of system = (1) + (5) -170.749 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.58 seconds