Wall clock time and date at job start Wed Apr 1 2020 03:45:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42903 * 1 3 3 C 1.42901 * 114.00267 * 2 1 4 4 C 1.52996 * 109.47127 * 180.02562 * 3 2 1 5 5 O 1.42903 * 109.47300 * 65.00013 * 4 3 2 6 6 C 1.42902 * 113.99996 * 180.02562 * 5 4 3 7 7 C 1.54338 * 111.39752 * 298.39564 * 6 5 4 8 8 C 1.54863 * 104.13438 * 213.31358 * 7 6 5 9 9 C 1.54838 * 102.73758 * 38.71089 * 8 7 6 10 10 C 1.54026 * 104.46543 * 322.42160 * 9 8 7 11 11 N 1.46497 * 112.60093 * 145.40207 * 10 9 8 12 12 C 1.34780 * 119.99517 * 59.84477 * 11 10 9 13 13 O 1.21277 * 120.00435 * 359.97438 * 12 11 10 14 14 C 1.50703 * 119.99838 * 180.02562 * 12 11 10 15 15 S 1.81003 * 109.47011 * 180.02562 * 14 12 11 16 16 C 1.76210 * 99.99816 * 179.97438 * 15 14 12 17 17 H 1.07997 * 119.99551 * 0.02562 * 16 15 14 18 18 C 1.38793 * 119.99644 * 179.97438 * 16 15 14 19 19 N 1.31631 * 120.00680 * 0.02562 * 18 16 15 20 20 Si 1.86799 * 119.99776 * 180.02562 * 18 16 15 21 21 H 1.48497 * 109.47275 * 90.00046 * 20 18 16 22 22 H 1.48499 * 109.47356 * 209.99913 * 20 18 16 23 23 H 1.48498 * 109.47250 * 329.99630 * 20 18 16 24 24 C 1.54624 * 109.08232 * 270.26412 * 10 9 8 25 25 C 1.54987 * 102.08765 * 135.04885 * 24 10 9 26 26 O 1.43654 * 103.79057 * 323.14714 * 25 24 10 27 27 H 1.09002 * 109.47382 * 179.97438 * 1 2 3 28 28 H 1.09001 * 109.46938 * 59.99878 * 1 2 3 29 29 H 1.09004 * 109.46926 * 299.99999 * 1 2 3 30 30 H 1.09001 * 109.46707 * 299.99906 * 3 2 1 31 31 H 1.08999 * 109.46695 * 60.00012 * 3 2 1 32 32 H 1.09001 * 109.46958 * 185.00183 * 4 3 2 33 33 H 1.08998 * 109.46981 * 304.99923 * 4 3 2 34 34 H 1.09007 * 110.49844 * 331.97609 * 7 6 5 35 35 H 1.08998 * 110.50319 * 94.64446 * 7 6 5 36 36 H 1.09003 * 110.75883 * 280.39819 * 8 7 6 37 37 H 1.09000 * 110.92254 * 157.09139 * 8 7 6 38 38 H 1.08993 * 110.43322 * 203.67595 * 9 8 7 39 39 H 1.08994 * 110.43417 * 81.16507 * 9 8 7 40 40 H 0.96994 * 120.00478 * 239.84382 * 11 10 9 41 41 H 1.09004 * 109.47206 * 299.99366 * 14 12 11 42 42 H 1.08994 * 109.47394 * 60.00006 * 14 12 11 43 43 H 0.96998 * 120.00614 * 179.97438 * 19 18 16 44 44 H 1.08997 * 110.90788 * 253.24474 * 24 10 9 45 45 H 1.08999 * 110.90487 * 16.82108 * 24 10 9 46 46 H 1.09008 * 110.61796 * 81.14253 * 25 24 10 47 47 H 1.09007 * 110.62211 * 204.13966 * 25 24 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0103 1.3054 0.0000 4 6 3.5355 1.1846 -0.0006 5 8 3.9649 0.5795 -1.2220 6 6 5.3812 0.4190 -1.3246 7 6 6.1068 1.7804 -1.2814 8 6 7.3360 1.5832 -2.2026 9 6 6.7634 0.7240 -3.3565 10 6 5.7799 -0.2401 -2.6668 11 7 4.6117 -0.5421 -3.4976 12 6 4.7743 -1.1200 -4.7043 13 8 5.8877 -1.3896 -5.1026 14 6 3.5727 -1.4302 -5.5593 15 16 4.1148 -2.1972 -7.1065 16 6 2.5550 -2.4464 -7.8875 17 1 1.6467 -2.1432 -7.3881 18 6 2.4940 -3.0312 -9.1447 19 7 3.6012 -3.4003 -9.7535 20 14 0.8405 -3.2948 -9.9729 21 1 0.4978 -2.1000 -10.7853 22 1 0.9126 -4.4882 -10.8537 23 1 -0.2034 -3.5058 -8.9380 24 6 6.5375 -1.5217 -2.2490 25 6 6.0189 -1.7495 -0.8064 26 8 5.8911 -0.4212 -0.2746 27 1 -0.3634 -1.0277 -0.0005 28 1 -0.3633 0.5139 -0.8900 29 1 -0.3633 0.5139 0.8900 30 1 1.6887 1.8463 -0.8900 31 1 1.6887 1.8463 0.8900 32 1 3.9786 2.1764 0.0890 33 1 3.8514 0.5681 0.8409 34 1 5.4619 2.5692 -1.6690 35 1 6.4249 2.0115 -0.2648 36 1 8.1290 1.0487 -1.6796 37 1 7.6992 2.5402 -2.5772 38 1 7.5610 0.1669 -3.8479 39 1 6.2386 1.3532 -4.0752 40 1 3.7213 -0.3262 -3.1793 41 1 2.9143 -2.1157 -5.0257 42 1 3.0354 -0.5077 -5.7793 43 1 3.5585 -3.8093 -10.6319 44 1 6.2716 -2.3587 -2.8947 45 1 7.6148 -1.3558 -2.2540 46 1 5.0461 -2.2411 -0.8214 47 1 6.7359 -2.3326 -0.2283 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000889941753.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:45:34 Heat of formation + Delta-G solvation = -172.102358 kcal Electronic energy + Delta-G solvation = -29564.725395 eV Core-core repulsion = 25453.045281 eV Total energy + Delta-G solvation = -4111.680114 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 345.149 amu Computer time = 0.58 seconds Orbital eigenvalues (eV) -41.27116 -38.77009 -38.22095 -36.69353 -35.67843 -33.65085 -32.40348 -31.26242 -30.55998 -28.93341 -27.35609 -26.71623 -26.30747 -25.42480 -23.31535 -22.35286 -21.23098 -20.57249 -19.27669 -18.06050 -17.71240 -17.20799 -16.73065 -16.11802 -16.04720 -15.82455 -15.46114 -15.09703 -14.94613 -14.78561 -14.71862 -14.47186 -14.03635 -13.79409 -13.34862 -13.05511 -13.00677 -12.73805 -12.64206 -12.41107 -12.18449 -12.04394 -11.72306 -11.52191 -11.45252 -11.30156 -11.22729 -11.08332 -11.04245 -10.99388 -10.73439 -10.67756 -10.31371 -9.96836 -9.86610 -9.78319 -9.27908 -9.04474 -8.80497 -8.20434 -6.46470 -6.19354 -3.89221 2.93799 3.13304 3.17320 3.23961 3.29952 3.34708 3.46008 3.51472 3.76498 4.18243 4.23032 4.23814 4.68894 4.73925 4.82288 4.86969 4.88926 4.95882 5.01619 5.10585 5.12768 5.15074 5.15855 5.20044 5.23790 5.36453 5.41673 5.46616 5.48422 5.53460 5.60210 5.62951 5.73266 5.79007 5.90881 5.95349 5.98040 6.11440 6.14960 6.21568 6.42872 6.64235 6.86520 7.06845 7.62334 7.86492 8.37975 8.69234 9.26179 10.88076 Molecular weight = 345.15amu Principal moments of inertia in cm(-1) A = 0.011144 B = 0.003146 C = 0.002623 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2511.975010 B = 8897.857733 C =10673.377954 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.031 3.969 2 O -0.382 6.382 3 C 0.062 3.938 4 C 0.068 3.932 5 O -0.371 6.371 6 C 0.255 3.745 7 C -0.138 4.138 8 C -0.120 4.120 9 C -0.120 4.120 10 C 0.173 3.827 11 N -0.716 5.716 12 C 0.534 3.466 13 O -0.515 6.515 14 C -0.152 4.152 15 S -0.059 6.059 16 C -0.535 4.535 17 H 0.072 0.928 18 C 0.074 3.926 19 N -0.868 5.868 20 Si 0.918 3.082 21 H -0.277 1.277 22 H -0.282 1.282 23 H -0.272 1.272 24 C -0.156 4.156 25 C 0.049 3.951 26 O -0.377 6.377 27 H 0.087 0.913 28 H 0.043 0.957 29 H 0.038 0.962 30 H 0.059 0.941 31 H 0.063 0.937 32 H 0.066 0.934 33 H 0.066 0.934 34 H 0.087 0.913 35 H 0.082 0.918 36 H 0.074 0.926 37 H 0.077 0.923 38 H 0.088 0.912 39 H 0.076 0.924 40 H 0.409 0.591 41 H 0.089 0.911 42 H 0.088 0.912 43 H 0.268 0.732 44 H 0.096 0.904 45 H 0.088 0.912 46 H 0.064 0.936 47 H 0.097 0.903 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.951 11.868 23.473 26.320 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.066 4.066 2 O -0.300 6.300 3 C -0.015 4.015 4 C -0.008 4.008 5 O -0.292 6.292 6 C 0.177 3.823 7 C -0.176 4.176 8 C -0.158 4.158 9 C -0.159 4.159 10 C 0.085 3.915 11 N -0.372 5.372 12 C 0.320 3.680 13 O -0.389 6.389 14 C -0.303 4.303 15 S 0.168 5.832 16 C -0.683 4.683 17 H 0.090 0.910 18 C -0.135 4.135 19 N -0.504 5.504 20 Si 0.744 3.256 21 H -0.203 1.203 22 H -0.208 1.208 23 H -0.197 1.197 24 C -0.195 4.195 25 C -0.028 4.028 26 O -0.297 6.297 27 H 0.105 0.895 28 H 0.061 0.939 29 H 0.057 0.943 30 H 0.077 0.923 31 H 0.081 0.919 32 H 0.084 0.916 33 H 0.085 0.915 34 H 0.105 0.895 35 H 0.100 0.900 36 H 0.093 0.907 37 H 0.096 0.904 38 H 0.107 0.893 39 H 0.094 0.906 40 H 0.246 0.754 41 H 0.107 0.893 42 H 0.107 0.893 43 H 0.078 0.922 44 H 0.115 0.885 45 H 0.106 0.894 46 H 0.082 0.918 47 H 0.115 0.885 Dipole moment (debyes) X Y Z Total from point charges 2.906 11.166 22.716 25.478 hybrid contribution -3.046 0.430 0.123 3.078 sum -0.140 11.596 22.839 25.615 Atomic orbital electron populations 1.22760 0.80994 1.03015 0.99827 1.87986 1.19619 1.27074 1.95356 1.22590 0.92338 0.85707 1.00866 1.22434 0.92906 0.97571 0.87872 1.87918 1.21573 1.81579 1.38088 1.23905 0.80181 0.91200 0.86988 1.22820 0.98003 0.95131 1.01612 1.22413 0.96786 1.00575 0.95991 1.22625 0.98656 0.97123 0.97447 1.21638 0.87143 0.94597 0.88110 1.45844 1.09271 1.64156 1.17920 1.20295 0.90962 0.76188 0.80546 1.90681 1.25816 1.50992 1.71437 1.23523 0.98866 1.04925 1.02946 1.85330 1.11910 1.77058 1.08916 1.22880 0.93008 1.46940 1.05474 0.90965 1.24975 0.97618 0.94766 0.96165 1.70016 1.26791 1.38819 1.14743 0.86182 0.82356 0.77923 0.79131 1.20292 1.20768 1.19697 1.23560 1.00853 0.98493 0.96580 1.23520 1.01051 0.84370 0.93815 1.88753 1.83833 1.20214 1.36891 0.89486 0.93862 0.94313 0.92324 0.91891 0.91638 0.91545 0.89482 0.89985 0.90703 0.90401 0.89328 0.90557 0.75397 0.89285 0.89319 0.92227 0.88538 0.89353 0.91789 0.88531 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.25 11.01 101.05 1.11 1.36 16 2 O -0.38 -4.25 10.67 -40.08 -0.43 -4.68 16 3 C 0.06 0.53 6.32 37.16 0.23 0.77 16 4 C 0.07 0.64 5.93 37.16 0.22 0.86 16 5 O -0.37 -4.41 8.49 -62.18 -0.53 -4.94 16 6 C 0.26 2.97 1.16 -25.10 -0.03 2.94 16 7 C -0.14 -1.28 5.05 -25.05 -0.13 -1.41 16 8 C -0.12 -1.12 6.88 -24.78 -0.17 -1.29 16 9 C -0.12 -1.51 4.79 -25.23 -0.12 -1.63 16 10 C 0.17 2.30 0.87 -129.51 -0.11 2.19 16 11 N -0.72 -10.84 5.18 -45.47 -0.24 -11.08 16 12 C 0.53 10.15 7.16 -10.98 -0.08 10.07 16 13 O -0.52 -11.25 13.91 5.56 0.08 -11.17 16 14 C -0.15 -3.17 6.16 36.01 0.22 -2.95 16 15 S -0.06 -1.60 20.57 -107.50 -2.21 -3.81 16 16 C -0.53 -15.39 9.50 30.94 0.29 -15.09 16 17 H 0.07 1.98 7.80 -52.49 -0.41 1.57 16 18 C 0.07 2.12 5.49 -17.43 -0.10 2.03 16 19 N -0.87 -26.29 13.22 55.49 0.73 -25.56 16 20 Si 0.92 21.57 29.55 -169.99 -5.02 16.55 16 21 H -0.28 -6.38 7.11 56.52 0.40 -5.98 16 22 H -0.28 -6.52 7.11 56.52 0.40 -6.11 16 23 H -0.27 -6.22 7.11 56.52 0.40 -5.82 16 24 C -0.16 -2.03 5.82 -24.83 -0.14 -2.17 16 25 C 0.05 0.56 7.70 38.21 0.29 0.86 16 26 O -0.38 -4.57 10.34 -58.73 -0.61 -5.18 16 27 H 0.09 0.65 8.14 -51.93 -0.42 0.23 16 28 H 0.04 0.33 8.14 -51.93 -0.42 -0.10 16 29 H 0.04 0.24 8.14 -51.93 -0.42 -0.18 16 30 H 0.06 0.48 8.14 -51.93 -0.42 0.06 16 31 H 0.06 0.39 8.14 -51.93 -0.42 -0.03 16 32 H 0.07 0.47 7.27 -51.93 -0.38 0.10 16 33 H 0.07 0.68 7.72 -51.93 -0.40 0.28 16 34 H 0.09 0.75 8.08 -51.92 -0.42 0.33 16 35 H 0.08 0.68 8.09 -51.93 -0.42 0.26 16 36 H 0.07 0.67 8.14 -51.93 -0.42 0.24 16 37 H 0.08 0.62 8.14 -51.93 -0.42 0.19 16 38 H 0.09 1.22 7.52 -51.93 -0.39 0.83 16 39 H 0.08 1.04 8.12 -51.93 -0.42 0.61 16 40 H 0.41 5.82 7.11 -40.82 -0.29 5.53 16 41 H 0.09 1.76 8.14 -51.91 -0.42 1.33 16 42 H 0.09 1.73 8.14 -51.92 -0.42 1.31 16 43 H 0.27 7.54 8.31 -40.82 -0.34 7.20 16 44 H 0.10 1.47 7.00 -51.93 -0.36 1.11 16 45 H 0.09 1.04 7.61 -51.93 -0.40 0.64 16 46 H 0.06 0.79 8.14 -51.92 -0.42 0.37 16 47 H 0.10 0.91 8.14 -51.93 -0.42 0.48 16 LS Contribution 391.31 15.07 5.90 5.90 Total: -1.00 -34.48 391.31 -8.50 -42.99 By element: Atomic # 1 Polarization: 12.13 SS G_CDS: -7.67 Total: 4.46 kcal Atomic # 6 Polarization: -4.97 SS G_CDS: 1.50 Total: -3.47 kcal Atomic # 7 Polarization: -37.14 SS G_CDS: 0.50 Total: -36.64 kcal Atomic # 8 Polarization: -24.48 SS G_CDS: -1.49 Total: -25.97 kcal Atomic # 14 Polarization: 21.57 SS G_CDS: -5.02 Total: 16.55 kcal Atomic # 16 Polarization: -1.60 SS G_CDS: -2.21 Total: -3.81 kcal Total LS contribution 5.90 Total: 5.90 kcal Total: -34.48 -8.50 -42.99 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000889941753.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -129.117 kcal (2) G-P(sol) polarization free energy of solvation -34.484 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -163.601 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.501 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.985 kcal (6) G-S(sol) free energy of system = (1) + (5) -172.102 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.58 seconds