Wall clock time and date at job start Wed Apr 1 2020 03:45:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42903 * 1 3 3 C 1.42901 * 114.00267 * 2 1 4 4 C 1.52996 * 109.47127 * 180.02562 * 3 2 1 5 5 O 1.42903 * 109.47300 * 65.00013 * 4 3 2 6 6 C 1.42902 * 113.99996 * 180.02562 * 5 4 3 7 7 C 1.54338 * 111.39752 * 298.39564 * 6 5 4 8 8 C 1.54863 * 104.13438 * 213.31358 * 7 6 5 9 9 C 1.54838 * 102.73758 * 38.71089 * 8 7 6 10 10 C 1.54026 * 104.46543 * 322.42160 * 9 8 7 11 11 N 1.46497 * 112.60093 * 145.40207 * 10 9 8 12 12 C 1.34780 * 119.99517 * 59.84477 * 11 10 9 13 13 O 1.21277 * 120.00435 * 359.97438 * 12 11 10 14 14 C 1.50703 * 119.99838 * 180.02562 * 12 11 10 15 15 S 1.81003 * 109.47011 * 180.02562 * 14 12 11 16 16 C 1.76210 * 99.99816 * 179.97438 * 15 14 12 17 17 H 1.07997 * 119.99551 * 0.02562 * 16 15 14 18 18 C 1.38793 * 119.99644 * 179.97438 * 16 15 14 19 19 N 1.31631 * 120.00680 * 0.02562 * 18 16 15 20 20 Si 1.86799 * 119.99776 * 180.02562 * 18 16 15 21 21 H 1.48497 * 109.47275 * 90.00046 * 20 18 16 22 22 H 1.48499 * 109.47356 * 209.99913 * 20 18 16 23 23 H 1.48498 * 109.47250 * 329.99630 * 20 18 16 24 24 C 1.54624 * 109.08232 * 270.26412 * 10 9 8 25 25 C 1.54987 * 102.08765 * 135.04885 * 24 10 9 26 26 O 1.43654 * 103.79057 * 323.14714 * 25 24 10 27 27 H 1.09002 * 109.47382 * 179.97438 * 1 2 3 28 28 H 1.09001 * 109.46938 * 59.99878 * 1 2 3 29 29 H 1.09004 * 109.46926 * 299.99999 * 1 2 3 30 30 H 1.09001 * 109.46707 * 299.99906 * 3 2 1 31 31 H 1.08999 * 109.46695 * 60.00012 * 3 2 1 32 32 H 1.09001 * 109.46958 * 185.00183 * 4 3 2 33 33 H 1.08998 * 109.46981 * 304.99923 * 4 3 2 34 34 H 1.09007 * 110.49844 * 331.97609 * 7 6 5 35 35 H 1.08998 * 110.50319 * 94.64446 * 7 6 5 36 36 H 1.09003 * 110.75883 * 280.39819 * 8 7 6 37 37 H 1.09000 * 110.92254 * 157.09139 * 8 7 6 38 38 H 1.08993 * 110.43322 * 203.67595 * 9 8 7 39 39 H 1.08994 * 110.43417 * 81.16507 * 9 8 7 40 40 H 0.96994 * 120.00478 * 239.84382 * 11 10 9 41 41 H 1.09004 * 109.47206 * 299.99366 * 14 12 11 42 42 H 1.08994 * 109.47394 * 60.00006 * 14 12 11 43 43 H 0.96998 * 120.00614 * 179.97438 * 19 18 16 44 44 H 1.08997 * 110.90788 * 253.24474 * 24 10 9 45 45 H 1.08999 * 110.90487 * 16.82108 * 24 10 9 46 46 H 1.09008 * 110.61796 * 81.14253 * 25 24 10 47 47 H 1.09007 * 110.62211 * 204.13966 * 25 24 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0103 1.3054 0.0000 4 6 3.5355 1.1846 -0.0006 5 8 3.9649 0.5795 -1.2220 6 6 5.3812 0.4190 -1.3246 7 6 6.1068 1.7804 -1.2814 8 6 7.3360 1.5832 -2.2026 9 6 6.7634 0.7240 -3.3565 10 6 5.7799 -0.2401 -2.6668 11 7 4.6117 -0.5421 -3.4976 12 6 4.7743 -1.1200 -4.7043 13 8 5.8877 -1.3896 -5.1026 14 6 3.5727 -1.4302 -5.5593 15 16 4.1148 -2.1972 -7.1065 16 6 2.5550 -2.4464 -7.8875 17 1 1.6467 -2.1432 -7.3881 18 6 2.4940 -3.0312 -9.1447 19 7 3.6012 -3.4003 -9.7535 20 14 0.8405 -3.2948 -9.9729 21 1 0.4978 -2.1000 -10.7853 22 1 0.9126 -4.4882 -10.8537 23 1 -0.2034 -3.5058 -8.9380 24 6 6.5375 -1.5217 -2.2490 25 6 6.0189 -1.7495 -0.8064 26 8 5.8911 -0.4212 -0.2746 27 1 -0.3634 -1.0277 -0.0005 28 1 -0.3633 0.5139 -0.8900 29 1 -0.3633 0.5139 0.8900 30 1 1.6887 1.8463 -0.8900 31 1 1.6887 1.8463 0.8900 32 1 3.9786 2.1764 0.0890 33 1 3.8514 0.5681 0.8409 34 1 5.4619 2.5692 -1.6690 35 1 6.4249 2.0115 -0.2648 36 1 8.1290 1.0487 -1.6796 37 1 7.6992 2.5402 -2.5772 38 1 7.5610 0.1669 -3.8479 39 1 6.2386 1.3532 -4.0752 40 1 3.7213 -0.3262 -3.1793 41 1 2.9143 -2.1157 -5.0257 42 1 3.0354 -0.5077 -5.7793 43 1 3.5585 -3.8093 -10.6319 44 1 6.2716 -2.3587 -2.8947 45 1 7.6148 -1.3558 -2.2540 46 1 5.0461 -2.2411 -0.8214 47 1 6.7359 -2.3326 -0.2283 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000889941753.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:45:34 Heat of formation + Delta-G solvation = -196.511954 kcal Electronic energy + Delta-G solvation = -29565.783874 eV Core-core repulsion = 25453.045281 eV Total energy + Delta-G solvation = -4112.738594 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 345.149 amu Computer time = 0.66 seconds Orbital eigenvalues (eV) -42.28609 -40.13133 -39.00958 -37.53429 -36.66870 -34.88226 -34.58712 -32.40614 -31.31916 -30.40396 -28.24171 -27.80859 -27.46431 -27.04841 -24.15835 -23.22161 -22.34351 -21.55645 -20.53287 -19.82202 -18.87251 -18.23131 -17.61115 -17.44462 -16.96988 -16.88525 -16.61263 -16.35926 -16.29262 -16.13060 -15.92047 -15.51625 -15.40181 -14.81684 -14.62710 -14.49158 -14.10037 -14.00601 -13.49932 -13.46777 -13.24288 -13.16491 -13.08136 -12.90003 -12.63142 -12.53464 -12.46448 -12.37082 -12.15457 -11.99643 -11.97332 -11.72327 -11.59685 -11.19435 -11.14796 -10.86643 -10.72254 -10.61036 -10.29554 -10.12025 -8.66451 -8.35315 -6.12991 1.24584 1.41666 1.44703 1.55919 1.59383 2.07001 2.26750 2.40385 2.59409 2.87667 2.98728 3.24612 3.30912 3.34815 3.75649 3.91038 3.93433 4.01045 4.08356 4.12749 4.23404 4.25522 4.27986 4.36832 4.42859 4.48085 4.51294 4.53023 4.57771 4.61802 4.70234 4.73336 4.79455 4.85427 4.87702 4.91412 4.94441 5.06175 5.11228 5.24241 5.41066 5.43384 5.54990 6.13435 6.19160 6.27851 6.49798 7.06020 7.22638 8.73878 Molecular weight = 345.15amu Principal moments of inertia in cm(-1) A = 0.011144 B = 0.003146 C = 0.002623 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2511.975010 B = 8897.857733 C =10673.377954 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.026 3.974 2 O -0.415 6.415 3 C 0.059 3.941 4 C 0.065 3.935 5 O -0.389 6.389 6 C 0.257 3.743 7 C -0.131 4.131 8 C -0.110 4.110 9 C -0.121 4.121 10 C 0.160 3.840 11 N -0.697 5.697 12 C 0.538 3.462 13 O -0.548 6.548 14 C -0.130 4.130 15 S -0.138 6.138 16 C -0.550 4.550 17 H 0.080 0.920 18 C 0.016 3.984 19 N -0.910 5.910 20 Si 0.997 3.003 21 H -0.267 1.267 22 H -0.276 1.276 23 H -0.260 1.260 24 C -0.156 4.156 25 C 0.054 3.946 26 O -0.378 6.378 27 H 0.086 0.914 28 H 0.045 0.955 29 H 0.057 0.943 30 H 0.061 0.939 31 H 0.089 0.911 32 H 0.092 0.908 33 H 0.056 0.944 34 H 0.098 0.902 35 H 0.100 0.900 36 H 0.082 0.918 37 H 0.097 0.903 38 H 0.069 0.931 39 H 0.062 0.938 40 H 0.415 0.585 41 H 0.101 0.899 42 H 0.104 0.896 43 H 0.272 0.728 44 H 0.068 0.932 45 H 0.099 0.901 46 H 0.052 0.948 47 H 0.121 0.879 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.333 13.567 25.366 28.768 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.070 4.070 2 O -0.334 6.334 3 C -0.017 4.017 4 C -0.011 4.011 5 O -0.310 6.310 6 C 0.179 3.821 7 C -0.169 4.169 8 C -0.148 4.148 9 C -0.159 4.159 10 C 0.072 3.928 11 N -0.352 5.352 12 C 0.324 3.676 13 O -0.425 6.425 14 C -0.281 4.281 15 S 0.089 5.911 16 C -0.698 4.698 17 H 0.098 0.902 18 C -0.189 4.189 19 N -0.547 5.547 20 Si 0.819 3.181 21 H -0.192 1.192 22 H -0.201 1.201 23 H -0.184 1.184 24 C -0.195 4.195 25 C -0.022 4.022 26 O -0.299 6.299 27 H 0.105 0.895 28 H 0.064 0.936 29 H 0.076 0.924 30 H 0.079 0.921 31 H 0.107 0.893 32 H 0.109 0.891 33 H 0.074 0.926 34 H 0.116 0.884 35 H 0.119 0.881 36 H 0.100 0.900 37 H 0.116 0.884 38 H 0.088 0.912 39 H 0.081 0.919 40 H 0.253 0.747 41 H 0.119 0.881 42 H 0.123 0.877 43 H 0.081 0.919 44 H 0.086 0.914 45 H 0.117 0.883 46 H 0.070 0.930 47 H 0.139 0.861 Dipole moment (debyes) X Y Z Total from point charges 1.609 12.892 24.657 27.871 hybrid contribution -2.636 -0.072 -0.362 2.661 sum -1.026 12.820 24.296 27.490 Atomic orbital electron populations 1.22877 0.79800 1.03420 1.00868 1.87936 1.21145 1.28746 1.95609 1.22754 0.91739 0.85042 1.02214 1.22641 0.93588 0.98443 0.86409 1.87884 1.21575 1.82138 1.39420 1.23960 0.80643 0.92070 0.85468 1.22851 0.97627 0.93766 1.02662 1.22408 0.96965 1.00848 0.94547 1.22580 0.97900 0.97074 0.98372 1.21948 0.86563 0.95281 0.88991 1.45629 1.10530 1.62429 1.16618 1.19954 0.89741 0.76498 0.81445 1.90672 1.26679 1.52717 1.72422 1.23360 0.99830 1.05133 0.99806 1.85444 1.13725 1.78459 1.13430 1.23211 0.93134 1.47286 1.06131 0.90234 1.26090 1.02021 0.94030 0.96746 1.70171 1.29541 1.39654 1.15290 0.84975 0.76937 0.78159 0.78047 1.19198 1.20137 1.18385 1.23522 1.01563 0.97341 0.97057 1.23518 1.00989 0.84581 0.93158 1.88755 1.83850 1.20233 1.37027 0.89528 0.93602 0.92439 0.92112 0.89267 0.89053 0.92558 0.88353 0.88139 0.89960 0.88440 0.91204 0.91885 0.74666 0.88068 0.87747 0.91935 0.91364 0.88288 0.92996 0.86132 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.39 11.01 113.37 1.25 1.64 16 2 O -0.41 -8.72 10.67 -144.34 -1.54 -10.26 16 3 C 0.06 0.88 6.32 71.98 0.45 1.34 16 4 C 0.06 1.06 5.93 71.98 0.43 1.49 16 5 O -0.39 -8.58 8.49 -123.22 -1.05 -9.63 16 6 C 0.26 5.50 1.16 31.65 0.04 5.53 16 7 C -0.13 -2.04 5.05 31.68 0.16 -1.88 16 8 C -0.11 -1.80 6.88 31.86 0.22 -1.58 16 9 C -0.12 -2.98 4.79 31.57 0.15 -2.83 16 10 C 0.16 4.16 0.87 5.10 0.00 4.16 16 11 N -0.70 -21.08 5.18 -416.17 -2.16 -23.23 16 12 C 0.54 20.88 7.16 87.66 0.63 21.51 16 13 O -0.55 -24.88 13.91 -3.02 -0.04 -24.93 16 14 C -0.13 -5.48 6.16 71.24 0.44 -5.04 16 15 S -0.14 -7.76 20.57 -56.49 -1.16 -8.92 16 16 C -0.55 -32.00 9.50 67.95 0.65 -31.36 16 17 H 0.08 4.34 7.80 -2.91 -0.02 4.32 16 18 C 0.02 0.92 5.49 84.86 0.47 1.39 16 19 N -0.91 -56.24 13.22 21.65 0.29 -55.95 16 20 Si 1.00 44.10 29.55 68.60 2.03 46.13 16 21 H -0.27 -11.29 7.11 99.48 0.71 -10.59 16 22 H -0.28 -11.85 7.11 99.48 0.71 -11.14 16 23 H -0.26 -10.86 7.11 99.48 0.71 -10.16 16 24 C -0.16 -4.06 5.82 31.83 0.19 -3.87 16 25 C 0.05 1.19 7.70 72.66 0.56 1.75 16 26 O -0.38 -8.44 10.34 -126.51 -1.31 -9.75 16 27 H 0.09 1.23 8.14 -2.39 -0.02 1.21 16 28 H 0.05 0.63 8.14 -2.39 -0.02 0.61 16 29 H 0.06 0.61 8.14 -2.38 -0.02 0.59 16 30 H 0.06 0.87 8.14 -2.39 -0.02 0.85 16 31 H 0.09 0.85 8.14 -2.39 -0.02 0.83 16 32 H 0.09 1.00 7.27 -2.39 -0.02 0.99 16 33 H 0.06 1.04 7.72 -2.39 -0.02 1.02 16 34 H 0.10 1.34 8.08 -2.38 -0.02 1.32 16 35 H 0.10 1.25 8.09 -2.39 -0.02 1.23 16 36 H 0.08 1.25 8.14 -2.39 -0.02 1.23 16 37 H 0.10 1.25 8.14 -2.39 -0.02 1.23 16 38 H 0.07 1.97 7.52 -2.39 -0.02 1.96 16 39 H 0.06 1.70 8.12 -2.39 -0.02 1.68 16 40 H 0.42 11.57 7.11 -92.71 -0.66 10.92 16 41 H 0.10 4.00 8.14 -2.39 -0.02 3.98 16 42 H 0.10 4.05 8.14 -2.40 -0.02 4.03 16 43 H 0.27 15.54 8.31 -92.71 -0.77 14.77 16 44 H 0.07 2.17 7.00 -2.39 -0.02 2.16 16 45 H 0.10 2.31 7.61 -2.39 -0.02 2.29 16 46 H 0.05 1.27 8.14 -2.38 -0.02 1.25 16 47 H 0.12 2.06 8.14 -2.38 -0.02 2.04 16 Total: -1.00 -76.66 391.31 0.99 -75.67 By element: Atomic # 1 Polarization: 28.32 SS G_CDS: 0.31 Total: 28.63 kcal Atomic # 6 Polarization: -13.38 SS G_CDS: 5.62 Total: -7.75 kcal Atomic # 7 Polarization: -77.31 SS G_CDS: -1.87 Total: -79.18 kcal Atomic # 8 Polarization: -50.63 SS G_CDS: -3.94 Total: -54.57 kcal Atomic # 14 Polarization: 44.10 SS G_CDS: 2.03 Total: 46.13 kcal Atomic # 16 Polarization: -7.76 SS G_CDS: -1.16 Total: -8.92 kcal Total: -76.66 0.99 -75.67 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000889941753.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -120.846 kcal (2) G-P(sol) polarization free energy of solvation -76.655 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -197.502 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.990 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.666 kcal (6) G-S(sol) free energy of system = (1) + (5) -196.512 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.66 seconds