Wall clock time and date at job start Wed Apr 1 2020 03:58:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 S 1.81006 * 1 3 3 C 1.76196 * 99.99928 * 2 1 4 4 N 1.33211 * 118.70062 * 0.02562 * 3 2 1 5 5 C 1.31822 * 121.61520 * 180.02562 * 4 3 2 6 6 C 1.40210 * 118.38958 * 0.24857 * 5 4 3 7 7 C 1.42045 * 118.45786 * 359.53110 * 6 5 4 8 8 C 1.40472 * 118.18035 * 180.26044 * 7 6 5 9 9 C 1.36258 * 118.83354 * 0.24432 * 8 7 6 10 10 N 1.32533 * 122.09663 * 0.02562 * 9 8 7 11 11 C 1.32229 * 122.58280 * 0.02562 * 10 9 8 12 12 N 1.38207 * 120.22300 * 180.02562 * 11 10 9 13 13 C 1.46500 * 119.99984 * 359.97438 * 12 11 10 14 14 C 1.53035 * 109.46282 * 275.07605 * 13 12 11 15 15 C 1.53194 * 109.31116 * 178.61556 * 14 13 12 16 16 N 1.46926 * 108.77677 * 54.63401 * 15 14 13 17 17 C 1.36930 * 120.63161 * 126.37492 * 16 15 14 18 18 H 1.07997 * 120.00009 * 331.84818 * 17 16 15 19 19 C 1.38820 * 120.00164 * 151.86140 * 17 16 15 20 20 N 1.31611 * 119.99802 * 343.05705 * 19 17 16 21 21 Si 1.86793 * 119.99870 * 163.06209 * 19 17 16 22 22 H 1.48497 * 109.47376 * 90.00073 * 21 19 17 23 23 H 1.48496 * 109.47024 * 209.99652 * 21 19 17 24 24 H 1.48503 * 109.47455 * 329.99857 * 21 19 17 25 25 C 1.46927 * 118.73395 * 306.38827 * 16 15 14 26 26 C 1.53037 * 109.45781 * 155.00029 * 13 12 11 27 27 N 1.32174 * 118.70162 * 180.02562 * 3 2 1 28 28 H 1.09000 * 109.47175 * 60.00016 * 1 2 3 29 29 H 1.08996 * 109.47196 * 180.02562 * 1 2 3 30 30 H 1.08999 * 109.46786 * 299.99218 * 1 2 3 31 31 H 1.08004 * 120.80697 * 179.97438 * 5 4 3 32 32 H 1.08001 * 120.58288 * 180.26971 * 8 7 6 33 33 H 1.08001 * 118.94978 * 179.97438 * 9 8 7 34 34 H 0.96998 * 120.00112 * 180.02562 * 12 11 10 35 35 H 1.09008 * 109.45684 * 35.03120 * 13 12 11 36 36 H 1.09001 * 109.49416 * 298.56462 * 14 13 12 37 37 H 1.08996 * 109.50123 * 58.65815 * 14 13 12 38 38 H 1.09001 * 109.58624 * 294.84447 * 15 14 13 39 39 H 1.09000 * 109.70155 * 174.48873 * 15 14 13 40 40 H 0.96998 * 120.00252 * 180.02562 * 20 19 17 41 41 H 1.09000 * 109.58933 * 293.81865 * 25 16 15 42 42 H 1.09004 * 109.69957 * 173.47038 * 25 16 15 43 43 H 1.08996 * 109.49994 * 301.33903 * 26 13 12 44 44 H 1.09003 * 109.49669 * 61.40972 * 26 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 16 1.8101 0.0000 0.0000 3 6 2.1160 1.7352 0.0000 4 7 1.0764 2.5681 0.0005 5 6 1.2390 3.8762 0.0001 6 6 2.5452 4.3857 -0.0064 7 6 3.6296 3.4682 -0.0019 8 6 4.9358 3.9849 -0.0027 9 6 5.1078 5.3366 -0.0027 10 7 4.0828 6.1768 -0.0015 11 6 2.8258 5.7667 0.0004 12 7 1.7940 6.6862 0.0011 13 6 2.0912 8.1207 0.0004 14 6 2.3211 8.5946 1.4373 15 6 2.6655 10.0872 1.4295 16 7 1.6056 10.8135 0.7169 17 6 0.9686 11.8730 1.3056 18 1 0.8802 11.9202 2.3809 19 6 0.4363 12.8864 0.5203 20 7 0.8165 13.0163 -0.7330 21 14 -0.8195 14.0657 1.2425 22 1 -0.1188 15.2327 1.8359 23 1 -1.7353 14.5311 0.1702 24 1 -1.6029 13.3708 2.2954 25 6 1.2420 10.3810 -0.6394 26 6 0.9135 8.8851 -0.6085 27 7 3.3680 2.1590 -0.0005 28 1 -0.3633 0.5138 -0.8900 29 1 -0.3633 -1.0276 0.0005 30 1 -0.3633 0.5137 0.8901 31 1 0.3866 4.5396 0.0001 32 1 5.7888 3.3225 -0.0038 33 1 6.1112 5.7359 -0.0030 34 1 0.8730 6.3817 0.0029 35 1 2.9884 8.3053 -0.5905 36 1 1.4159 8.4331 2.0227 37 1 3.1449 8.0333 1.8781 38 1 3.6180 10.2398 0.9218 39 1 2.7346 10.4538 2.4537 40 1 0.4449 13.7246 -1.2816 41 1 2.0783 10.5576 -1.3158 42 1 0.3709 10.9395 -0.9820 43 1 0.7356 8.5306 -1.6238 44 1 0.0214 8.7205 -0.0041 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000892404173.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:58:12 Heat of formation + Delta-G solvation = 103.232418 kcal Electronic energy + Delta-G solvation = -27155.808275 eV Core-core repulsion = 23427.961995 eV Total energy + Delta-G solvation = -3727.846280 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 345.132 amu Computer time = 2.17 seconds Orbital eigenvalues (eV) -41.69664 -39.12308 -37.83182 -35.69344 -34.02694 -32.70524 -31.96308 -30.71816 -29.87608 -29.38307 -28.79036 -25.82490 -25.26850 -24.73513 -22.65331 -22.17235 -21.63827 -19.77080 -19.46071 -18.43055 -17.76974 -17.19593 -16.61242 -16.01831 -15.69726 -15.23526 -15.02504 -14.72713 -14.68822 -14.30167 -14.01278 -13.85699 -13.66723 -13.54522 -13.08231 -13.04070 -12.80134 -12.59951 -12.39571 -11.88944 -11.75795 -11.53312 -11.17725 -11.01549 -10.93077 -10.76324 -10.69282 -10.40385 -10.31388 -10.19031 -9.95125 -9.72957 -9.60089 -9.55297 -9.42391 -8.53772 -8.17355 -7.74050 -6.74810 -5.85565 -3.27630 -0.02170 0.40141 0.88700 1.69554 1.77632 2.82690 2.94717 3.33371 3.40759 3.42589 3.76300 3.88337 4.12225 4.25296 4.29205 4.38855 4.44619 4.79203 4.85175 4.91321 5.23390 5.26429 5.32680 5.39413 5.41929 5.47068 5.49774 5.59964 5.78857 5.88444 5.97610 6.15999 6.20530 6.39501 6.42723 6.46876 6.56163 6.62669 6.72779 6.90891 7.02175 7.17572 7.24938 7.54907 7.57160 7.74163 8.07997 8.38624 9.14806 9.77929 10.34478 11.23500 Molecular weight = 345.13amu Principal moments of inertia in cm(-1) A = 0.021190 B = 0.002239 C = 0.002090 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1321.069135 B =12504.395782 C =13390.843053 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 S 0.005 5.995 3 C 0.316 3.684 4 N -0.549 5.549 5 C 0.239 3.761 6 C -0.275 4.275 7 C 0.243 3.757 8 C -0.245 4.245 9 C 0.192 3.808 10 N -0.560 5.560 11 C 0.479 3.521 12 N -0.691 5.691 13 C 0.156 3.844 14 C -0.137 4.137 15 C 0.148 3.852 16 N -0.592 5.592 17 C -0.253 4.253 18 H 0.065 0.935 19 C 0.002 3.998 20 N -0.903 5.903 21 Si 0.902 3.098 22 H -0.286 1.286 23 H -0.289 1.289 24 H -0.280 1.280 25 C 0.176 3.824 26 C -0.149 4.149 27 N -0.503 5.503 28 H 0.091 0.909 29 H 0.106 0.894 30 H 0.091 0.909 31 H 0.173 0.827 32 H 0.143 0.857 33 H 0.162 0.838 34 H 0.404 0.596 35 H 0.091 0.909 36 H 0.056 0.944 37 H 0.056 0.944 38 H 0.022 0.978 39 H 0.056 0.944 40 H 0.254 0.746 41 H 0.022 0.978 42 H 0.092 0.908 43 H 0.054 0.946 44 H 0.059 0.941 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.463 -23.096 -0.033 23.142 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.314 4.314 2 S 0.239 5.761 3 C -0.061 4.061 4 N -0.267 5.267 5 C 0.058 3.942 6 C -0.288 4.288 7 C 0.108 3.892 8 C -0.271 4.271 9 C 0.041 3.959 10 N -0.282 5.282 11 C 0.227 3.773 12 N -0.318 5.318 13 C 0.053 3.947 14 C -0.178 4.178 15 C 0.021 3.979 16 N -0.315 5.315 17 C -0.383 4.383 18 H 0.083 0.917 19 C -0.196 4.196 20 N -0.547 5.547 21 Si 0.731 3.269 22 H -0.213 1.213 23 H -0.215 1.215 24 H -0.205 1.205 25 C 0.049 3.951 26 C -0.189 4.189 27 N -0.221 5.221 28 H 0.110 0.890 29 H 0.124 0.876 30 H 0.110 0.890 31 H 0.190 0.810 32 H 0.161 0.839 33 H 0.180 0.820 34 H 0.240 0.760 35 H 0.109 0.891 36 H 0.074 0.926 37 H 0.075 0.925 38 H 0.040 0.960 39 H 0.074 0.926 40 H 0.064 0.936 41 H 0.040 0.960 42 H 0.110 0.890 43 H 0.073 0.927 44 H 0.078 0.922 Dipole moment (debyes) X Y Z Total from point charges 2.323 -23.946 -0.151 24.059 hybrid contribution -1.864 1.642 0.307 2.503 sum 0.459 -22.304 0.156 22.309 Atomic orbital electron populations 1.23582 0.94048 1.06355 1.07413 1.85856 1.06889 0.93445 1.89959 1.25048 0.87349 1.00569 0.93135 1.68674 1.33760 1.04462 1.19791 1.23279 0.95143 0.91400 0.84388 1.19854 0.97164 0.95329 1.16444 1.18745 0.93570 0.87702 0.89225 1.21126 0.95044 0.96569 1.14361 1.22128 0.97344 0.88890 0.87545 1.67368 0.97340 1.38945 1.24540 1.18349 0.88549 0.84931 0.85442 1.45259 1.05655 1.06337 1.74565 1.21210 0.99871 0.75728 0.97846 1.22380 1.00843 0.99129 0.95414 1.20865 0.91324 0.88990 0.96678 1.44088 1.38918 1.33969 1.14539 1.19162 1.29920 0.97680 0.91510 0.91681 1.25052 1.00995 0.96975 0.96589 1.70011 1.43654 1.33483 1.07561 0.86311 0.81415 0.80999 0.78133 1.21340 1.21548 1.20515 1.20724 1.00494 0.87491 0.86386 1.22589 0.96772 1.00519 0.99069 1.68940 1.19805 1.14811 1.18567 0.88977 0.87587 0.88976 0.81025 0.83922 0.82041 0.75975 0.89086 0.92555 0.92508 0.96021 0.92576 0.93555 0.95990 0.88986 0.92689 0.92176 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 44. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -0.95 9.59 101.05 0.97 0.02 16 2 S 0.00 0.04 22.88 -107.50 -2.46 -2.41 16 3 C 0.32 4.03 7.84 -90.60 -0.71 3.32 16 4 N -0.55 -6.47 9.02 -13.07 -0.12 -6.59 16 5 C 0.24 2.61 10.85 -16.82 -0.18 2.43 16 6 C -0.28 -3.50 5.76 -106.68 -0.61 -4.11 16 7 C 0.24 3.33 6.64 -84.84 -0.56 2.76 16 8 C -0.24 -2.90 10.09 -39.45 -0.40 -3.30 16 9 C 0.19 2.22 11.06 -17.96 -0.20 2.02 16 10 N -0.56 -7.79 9.18 -12.52 -0.11 -7.91 16 11 C 0.48 6.34 7.50 -155.25 -1.16 5.17 16 12 N -0.69 -8.63 5.15 -53.65 -0.28 -8.91 16 13 C 0.16 2.42 2.43 -67.89 -0.16 2.25 16 14 C -0.14 -2.29 5.66 -26.61 -0.15 -2.44 16 15 C 0.15 2.99 6.52 -3.71 -0.02 2.97 16 16 N -0.59 -14.12 2.99 -172.32 -0.52 -14.63 16 17 C -0.25 -6.70 9.58 -15.06 -0.14 -6.84 16 18 H 0.07 1.70 7.88 -52.49 -0.41 1.29 16 19 C 0.00 0.07 4.92 -17.43 -0.09 -0.02 16 20 N -0.90 -25.37 11.19 55.49 0.62 -24.75 16 21 Si 0.90 21.07 29.59 -169.99 -5.03 16.04 16 22 H -0.29 -6.73 7.11 56.52 0.40 -6.33 16 23 H -0.29 -6.80 7.11 56.52 0.40 -6.40 16 24 H -0.28 -6.42 7.11 56.52 0.40 -6.02 16 25 C 0.18 3.91 5.30 -3.71 -0.02 3.89 16 26 C -0.15 -2.52 5.55 -26.61 -0.15 -2.67 16 27 N -0.50 -7.09 10.42 -11.38 -0.12 -7.21 16 28 H 0.09 0.63 8.10 -51.92 -0.42 0.21 16 29 H 0.11 0.44 8.14 -51.92 -0.42 0.02 16 30 H 0.09 0.63 8.10 -51.92 -0.42 0.21 16 31 H 0.17 1.28 6.64 -52.48 -0.35 0.93 16 32 H 0.14 1.44 8.06 -52.49 -0.42 1.02 16 33 H 0.16 1.35 8.06 -52.49 -0.42 0.93 16 34 H 0.40 4.03 6.85 -40.82 -0.28 3.75 16 35 H 0.09 1.56 7.55 -51.92 -0.39 1.17 16 36 H 0.06 0.96 8.14 -51.93 -0.42 0.53 16 37 H 0.06 0.91 8.14 -51.93 -0.42 0.49 16 38 H 0.02 0.45 8.14 -51.93 -0.42 0.03 16 39 H 0.06 1.12 7.93 -51.93 -0.41 0.71 16 40 H 0.25 6.93 8.31 -40.82 -0.34 6.59 16 41 H 0.02 0.52 8.14 -51.93 -0.42 0.10 16 42 H 0.09 2.31 6.06 -51.93 -0.31 1.99 16 43 H 0.05 0.83 8.14 -51.93 -0.42 0.41 16 44 H 0.06 1.00 8.14 -51.93 -0.42 0.58 16 LS Contribution 371.57 15.07 5.60 5.60 Total: -1.00 -31.16 371.57 -11.95 -43.11 By element: Atomic # 1 Polarization: 8.15 SS G_CDS: -5.94 Total: 2.20 kcal Atomic # 6 Polarization: 9.05 SS G_CDS: -3.60 Total: 5.45 kcal Atomic # 7 Polarization: -69.47 SS G_CDS: -0.52 Total: -69.99 kcal Atomic # 14 Polarization: 21.07 SS G_CDS: -5.03 Total: 16.04 kcal Atomic # 16 Polarization: 0.04 SS G_CDS: -2.46 Total: -2.41 kcal Total LS contribution 5.60 Total: 5.60 kcal Total: -31.16 -11.95 -43.11 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000892404173.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 146.346 kcal (2) G-P(sol) polarization free energy of solvation -31.161 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 115.185 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.952 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.113 kcal (6) G-S(sol) free energy of system = (1) + (5) 103.232 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 2.17 seconds