Wall clock time and date at job start Wed Apr 1 2020 03:58:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 S 1.81006 * 1 3 3 C 1.76196 * 99.99928 * 2 1 4 4 N 1.33211 * 118.70062 * 0.02562 * 3 2 1 5 5 C 1.31822 * 121.61520 * 180.02562 * 4 3 2 6 6 C 1.40210 * 118.38958 * 0.24857 * 5 4 3 7 7 C 1.42045 * 118.45786 * 359.53110 * 6 5 4 8 8 C 1.40472 * 118.18035 * 180.26044 * 7 6 5 9 9 C 1.36258 * 118.83354 * 0.24432 * 8 7 6 10 10 N 1.32533 * 122.09663 * 0.02562 * 9 8 7 11 11 C 1.32229 * 122.58280 * 0.02562 * 10 9 8 12 12 N 1.38207 * 120.22300 * 180.02562 * 11 10 9 13 13 C 1.46500 * 119.99984 * 359.97438 * 12 11 10 14 14 C 1.53035 * 109.46282 * 275.07605 * 13 12 11 15 15 C 1.53194 * 109.31116 * 178.61556 * 14 13 12 16 16 N 1.46926 * 108.77677 * 54.63401 * 15 14 13 17 17 C 1.36930 * 120.63161 * 126.37492 * 16 15 14 18 18 H 1.07997 * 120.00009 * 331.84818 * 17 16 15 19 19 C 1.38820 * 120.00164 * 151.86140 * 17 16 15 20 20 N 1.31611 * 119.99802 * 343.05705 * 19 17 16 21 21 Si 1.86793 * 119.99870 * 163.06209 * 19 17 16 22 22 H 1.48497 * 109.47376 * 90.00073 * 21 19 17 23 23 H 1.48496 * 109.47024 * 209.99652 * 21 19 17 24 24 H 1.48503 * 109.47455 * 329.99857 * 21 19 17 25 25 C 1.46927 * 118.73395 * 306.38827 * 16 15 14 26 26 C 1.53037 * 109.45781 * 155.00029 * 13 12 11 27 27 N 1.32174 * 118.70162 * 180.02562 * 3 2 1 28 28 H 1.09000 * 109.47175 * 60.00016 * 1 2 3 29 29 H 1.08996 * 109.47196 * 180.02562 * 1 2 3 30 30 H 1.08999 * 109.46786 * 299.99218 * 1 2 3 31 31 H 1.08004 * 120.80697 * 179.97438 * 5 4 3 32 32 H 1.08001 * 120.58288 * 180.26971 * 8 7 6 33 33 H 1.08001 * 118.94978 * 179.97438 * 9 8 7 34 34 H 0.96998 * 120.00112 * 180.02562 * 12 11 10 35 35 H 1.09008 * 109.45684 * 35.03120 * 13 12 11 36 36 H 1.09001 * 109.49416 * 298.56462 * 14 13 12 37 37 H 1.08996 * 109.50123 * 58.65815 * 14 13 12 38 38 H 1.09001 * 109.58624 * 294.84447 * 15 14 13 39 39 H 1.09000 * 109.70155 * 174.48873 * 15 14 13 40 40 H 0.96998 * 120.00252 * 180.02562 * 20 19 17 41 41 H 1.09000 * 109.58933 * 293.81865 * 25 16 15 42 42 H 1.09004 * 109.69957 * 173.47038 * 25 16 15 43 43 H 1.08996 * 109.49994 * 301.33903 * 26 13 12 44 44 H 1.09003 * 109.49669 * 61.40972 * 26 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 16 1.8101 0.0000 0.0000 3 6 2.1160 1.7352 0.0000 4 7 1.0764 2.5681 0.0005 5 6 1.2390 3.8762 0.0001 6 6 2.5452 4.3857 -0.0064 7 6 3.6296 3.4682 -0.0019 8 6 4.9358 3.9849 -0.0027 9 6 5.1078 5.3366 -0.0027 10 7 4.0828 6.1768 -0.0015 11 6 2.8258 5.7667 0.0004 12 7 1.7940 6.6862 0.0011 13 6 2.0912 8.1207 0.0004 14 6 2.3211 8.5946 1.4373 15 6 2.6655 10.0872 1.4295 16 7 1.6056 10.8135 0.7169 17 6 0.9686 11.8730 1.3056 18 1 0.8802 11.9202 2.3809 19 6 0.4363 12.8864 0.5203 20 7 0.8165 13.0163 -0.7330 21 14 -0.8195 14.0657 1.2425 22 1 -0.1188 15.2327 1.8359 23 1 -1.7353 14.5311 0.1702 24 1 -1.6029 13.3708 2.2954 25 6 1.2420 10.3810 -0.6394 26 6 0.9135 8.8851 -0.6085 27 7 3.3680 2.1590 -0.0005 28 1 -0.3633 0.5138 -0.8900 29 1 -0.3633 -1.0276 0.0005 30 1 -0.3633 0.5137 0.8901 31 1 0.3866 4.5396 0.0001 32 1 5.7888 3.3225 -0.0038 33 1 6.1112 5.7359 -0.0030 34 1 0.8730 6.3817 0.0029 35 1 2.9884 8.3053 -0.5905 36 1 1.4159 8.4331 2.0227 37 1 3.1449 8.0333 1.8781 38 1 3.6180 10.2398 0.9218 39 1 2.7346 10.4538 2.4537 40 1 0.4449 13.7246 -1.2816 41 1 2.0783 10.5576 -1.3158 42 1 0.3709 10.9395 -0.9820 43 1 0.7356 8.5306 -1.6238 44 1 0.0214 8.7205 -0.0041 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000892404173.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:58:11 Heat of formation + Delta-G solvation = 85.182364 kcal Electronic energy + Delta-G solvation = -27156.590984 eV Core-core repulsion = 23427.961995 eV Total energy + Delta-G solvation = -3728.628989 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 345.132 amu Computer time = 0.68 seconds Orbital eigenvalues (eV) -42.60985 -40.19979 -39.12869 -36.96545 -35.18141 -34.11145 -33.09663 -32.12920 -31.39784 -30.26604 -29.75764 -27.05569 -26.39781 -25.99007 -24.03985 -23.67233 -22.84054 -21.00955 -20.64657 -19.35402 -19.05773 -18.40782 -17.89852 -17.02242 -16.79509 -16.61562 -16.15395 -15.91912 -15.55989 -15.49724 -15.34603 -15.16553 -14.77519 -14.68615 -14.42295 -14.08333 -14.04313 -13.68453 -13.30935 -13.19557 -13.00648 -12.78345 -12.72372 -12.60162 -12.49733 -12.19287 -12.01245 -11.86147 -11.69634 -11.62536 -11.29928 -11.19784 -10.82061 -10.61587 -10.52763 -10.37697 -8.98461 -8.70640 -8.67823 -7.87243 -5.31778 -0.91965 -0.52063 0.10659 0.77209 1.15202 1.47969 1.49876 1.59028 1.90839 1.92256 2.52516 2.93346 2.95014 3.26042 3.28781 3.35688 3.44042 3.47554 3.68774 3.91041 3.99321 4.09335 4.34332 4.35992 4.39014 4.43115 4.49205 4.58187 4.68752 4.71349 4.85639 4.91012 4.95967 5.02858 5.05631 5.12740 5.18743 5.33293 5.42304 5.50230 5.66282 5.71886 5.74261 5.94998 6.24643 6.40557 6.66550 7.14325 7.16284 7.86642 8.38208 9.19680 Molecular weight = 345.13amu Principal moments of inertia in cm(-1) A = 0.021190 B = 0.002239 C = 0.002090 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1321.069135 B =12504.395782 C =13390.843053 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.136 4.136 2 S 0.000 6.000 3 C 0.301 3.699 4 N -0.550 5.550 5 C 0.243 3.757 6 C -0.284 4.284 7 C 0.221 3.779 8 C -0.245 4.245 9 C 0.190 3.810 10 N -0.585 5.585 11 C 0.476 3.524 12 N -0.683 5.683 13 C 0.174 3.826 14 C -0.121 4.121 15 C 0.146 3.854 16 N -0.609 5.609 17 C -0.261 4.261 18 H 0.065 0.935 19 C -0.049 4.049 20 N -0.934 5.934 21 Si 0.965 3.035 22 H -0.287 1.287 23 H -0.292 1.292 24 H -0.270 1.270 25 C 0.180 3.820 26 C -0.133 4.133 27 N -0.528 5.528 28 H 0.091 0.909 29 H 0.134 0.866 30 H 0.091 0.909 31 H 0.207 0.793 32 H 0.156 0.844 33 H 0.190 0.810 34 H 0.418 0.582 35 H 0.076 0.924 36 H 0.058 0.942 37 H 0.066 0.934 38 H 0.014 0.986 39 H 0.053 0.947 40 H 0.250 0.750 41 H -0.003 1.003 42 H 0.060 0.940 43 H 0.076 0.924 44 H 0.068 0.932 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.409 -24.938 0.594 24.948 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.305 4.305 2 S 0.234 5.766 3 C -0.075 4.075 4 N -0.268 5.268 5 C 0.062 3.938 6 C -0.296 4.296 7 C 0.085 3.915 8 C -0.270 4.270 9 C 0.040 3.960 10 N -0.307 5.307 11 C 0.225 3.775 12 N -0.312 5.312 13 C 0.070 3.930 14 C -0.161 4.161 15 C 0.020 3.980 16 N -0.333 5.333 17 C -0.391 4.391 18 H 0.083 0.917 19 C -0.244 4.244 20 N -0.580 5.580 21 Si 0.793 3.207 22 H -0.214 1.214 23 H -0.219 1.219 24 H -0.195 1.195 25 C 0.054 3.946 26 C -0.172 4.172 27 N -0.248 5.248 28 H 0.110 0.890 29 H 0.152 0.848 30 H 0.110 0.890 31 H 0.223 0.777 32 H 0.174 0.826 33 H 0.207 0.793 34 H 0.257 0.743 35 H 0.094 0.906 36 H 0.077 0.923 37 H 0.085 0.915 38 H 0.032 0.968 39 H 0.072 0.928 40 H 0.059 0.941 41 H 0.016 0.984 42 H 0.079 0.921 43 H 0.094 0.906 44 H 0.086 0.914 Dipole moment (debyes) X Y Z Total from point charges 1.276 -25.850 0.491 25.886 hybrid contribution -1.469 2.100 0.120 2.565 sum -0.192 -23.750 0.611 23.758 Atomic orbital electron populations 1.23682 0.91302 1.08154 1.07353 1.85872 1.09881 0.91684 1.89144 1.25601 0.87334 1.02046 0.92543 1.68776 1.33234 1.04740 1.20058 1.23845 0.95556 0.91596 0.82801 1.19874 0.97828 0.94833 1.17106 1.19104 0.94596 0.88059 0.89708 1.21355 0.95075 0.96967 1.13623 1.22552 0.98037 0.88693 0.86723 1.67384 0.98074 1.40026 1.25172 1.18352 0.88484 0.85110 0.85578 1.44835 1.06379 1.04765 1.75260 1.20735 0.98489 0.77333 0.96490 1.22155 1.01178 0.96324 0.96438 1.20962 0.90116 0.91043 0.95918 1.44345 1.39925 1.33968 1.15068 1.19472 1.29643 0.98284 0.91738 0.91684 1.25766 1.02889 0.98761 0.97026 1.70163 1.44917 1.34193 1.08736 0.85324 0.79105 0.78911 0.77371 1.21425 1.21859 1.19515 1.20532 0.98127 0.90717 0.85262 1.22297 0.97485 0.96660 1.00783 1.68980 1.20659 1.15100 1.20049 0.88963 0.84790 0.88982 0.77662 0.82608 0.79277 0.74304 0.90634 0.92307 0.91549 0.96848 0.92817 0.94062 0.98444 0.92136 0.90563 0.91376 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.46 9.59 113.37 1.09 -0.37 16 2 S 0.00 0.00 22.88 -56.49 -1.29 -1.29 16 3 C 0.30 7.32 7.84 180.34 1.41 8.73 16 4 N -0.55 -11.93 9.02 -195.27 -1.76 -13.69 16 5 C 0.24 4.76 10.85 85.17 0.92 5.69 16 6 C -0.28 -6.75 5.76 -21.20 -0.12 -6.88 16 7 C 0.22 5.82 6.64 40.38 0.27 6.09 16 8 C -0.24 -5.52 10.09 22.35 0.23 -5.30 16 9 C 0.19 4.11 11.06 84.13 0.93 5.04 16 10 N -0.58 -15.42 9.18 -193.53 -1.78 -17.19 16 11 C 0.48 11.73 7.50 133.83 1.00 12.74 16 12 N -0.68 -15.45 5.15 -323.65 -1.67 -17.12 16 13 C 0.17 5.11 2.43 45.02 0.11 5.22 16 14 C -0.12 -3.85 5.66 30.67 0.17 -3.67 16 15 C 0.15 5.86 6.52 86.36 0.56 6.42 16 16 N -0.61 -29.31 2.99 -699.09 -2.09 -31.40 16 17 C -0.26 -13.92 9.58 84.04 0.81 -13.11 16 18 H 0.07 3.39 7.88 -2.91 -0.02 3.37 16 19 C -0.05 -2.66 4.92 84.87 0.42 -2.24 16 20 N -0.93 -53.78 11.19 21.65 0.24 -53.54 16 21 Si 0.96 43.66 29.59 68.60 2.03 45.69 16 22 H -0.29 -12.94 7.11 99.48 0.71 -12.23 16 23 H -0.29 -13.25 7.11 99.48 0.71 -12.54 16 24 H -0.27 -11.69 7.11 99.48 0.71 -10.98 16 25 C 0.18 8.12 5.30 86.36 0.46 8.58 16 26 C -0.13 -4.29 5.55 30.67 0.17 -4.12 16 27 N -0.53 -14.52 10.42 -189.91 -1.98 -16.50 16 28 H 0.09 1.04 8.10 -2.40 -0.02 1.02 16 29 H 0.13 0.69 8.14 -2.40 -0.02 0.67 16 30 H 0.09 1.04 8.10 -2.40 -0.02 1.02 16 31 H 0.21 2.36 6.64 -2.91 -0.02 2.34 16 32 H 0.16 2.97 8.06 -2.91 -0.02 2.94 16 33 H 0.19 2.81 8.06 -2.91 -0.02 2.78 16 34 H 0.42 7.01 6.85 -92.71 -0.64 6.37 16 35 H 0.08 2.52 7.55 -2.38 -0.02 2.50 16 36 H 0.06 1.87 8.14 -2.39 -0.02 1.85 16 37 H 0.07 2.01 8.14 -2.39 -0.02 1.99 16 38 H 0.01 0.56 8.14 -2.39 -0.02 0.54 16 39 H 0.05 2.14 7.93 -2.39 -0.02 2.12 16 40 H 0.25 13.98 8.31 -92.71 -0.77 13.21 16 41 H 0.00 -0.12 8.14 -2.39 -0.02 -0.14 16 42 H 0.06 3.11 6.06 -2.39 -0.01 3.10 16 43 H 0.08 2.16 8.14 -2.39 -0.02 2.14 16 44 H 0.07 2.12 8.14 -2.39 -0.02 2.10 16 Total: -1.00 -68.60 371.57 0.53 -68.07 By element: Atomic # 1 Polarization: 13.78 SS G_CDS: 0.40 Total: 14.18 kcal Atomic # 6 Polarization: 14.39 SS G_CDS: 8.43 Total: 22.81 kcal Atomic # 7 Polarization: -140.42 SS G_CDS: -9.03 Total: -149.46 kcal Atomic # 14 Polarization: 43.66 SS G_CDS: 2.03 Total: 45.69 kcal Atomic # 16 Polarization: 0.00 SS G_CDS: -1.29 Total: -1.29 kcal Total: -68.60 0.53 -68.07 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000892404173.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 153.249 kcal (2) G-P(sol) polarization free energy of solvation -68.596 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 84.653 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.529 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.066 kcal (6) G-S(sol) free energy of system = (1) + (5) 85.182 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.68 seconds