Wall clock time and date at job start Wed Apr 1 2020 03:57:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45199 * 1 3 3 C 1.34231 * 117.00242 * 2 1 4 4 O 1.20833 * 119.99839 * 0.02562 * 3 2 1 5 5 C 1.50693 * 120.00323 * 180.02562 * 3 2 1 6 6 H 1.08996 * 109.47129 * 59.99522 * 5 3 2 7 7 C 1.53009 * 109.46873 * 300.00200 * 5 3 2 8 8 C 1.50704 * 109.46904 * 174.99985 * 7 5 3 9 9 C 1.33990 * 124.92202 * 89.99854 * 8 7 5 10 10 C 1.46787 * 106.18608 * 179.97438 * 9 8 7 11 11 C 1.39406 * 134.37016 * 180.02562 * 10 9 8 12 12 C 1.36736 * 119.71514 * 180.02562 * 11 10 9 13 13 C 1.38743 * 120.41735 * 359.95255 * 12 11 10 14 14 C 1.37855 * 120.68498 * 0.02562 * 13 12 11 15 15 C 1.38944 * 119.81775 * 0.02562 * 14 13 12 16 16 O 1.34443 * 124.92335 * 269.97214 * 8 7 5 17 17 N 1.46501 * 109.47473 * 180.02562 * 5 3 2 18 18 C 1.34779 * 119.99717 * 275.00057 * 17 5 3 19 19 O 1.21277 * 119.99936 * 359.97438 * 18 17 5 20 20 C 1.50695 * 119.99960 * 179.97438 * 18 17 5 21 21 C 1.53002 * 109.47074 * 179.97438 * 20 18 17 22 22 C 1.50702 * 109.46935 * 179.97438 * 21 20 18 23 23 H 1.07994 * 120.00200 * 0.02562 * 22 21 20 24 24 C 1.37873 * 119.99829 * 179.97438 * 22 21 20 25 25 N 1.31521 * 120.00129 * 0.02562 * 24 22 21 26 26 Si 1.86803 * 120.00091 * 180.02562 * 24 22 21 27 27 H 1.48505 * 109.46975 * 0.02562 * 26 24 22 28 28 H 1.48496 * 109.46999 * 120.00309 * 26 24 22 29 29 H 1.48501 * 109.47142 * 240.00824 * 26 24 22 30 30 H 1.09002 * 109.47092 * 299.99895 * 1 2 3 31 31 H 1.09000 * 109.47239 * 59.99792 * 1 2 3 32 32 H 1.08997 * 109.47373 * 179.97438 * 1 2 3 33 33 H 1.08996 * 109.47025 * 55.00214 * 7 5 3 34 34 H 1.09003 * 109.47047 * 294.99691 * 7 5 3 35 35 H 1.08003 * 126.91279 * 359.97438 * 9 8 7 36 36 H 1.07992 * 120.14243 * 359.94200 * 11 10 9 37 37 H 1.07998 * 119.79185 * 179.97438 * 12 11 10 38 38 H 1.07998 * 119.66172 * 180.30210 * 13 12 11 39 39 H 1.07999 * 120.08813 * 180.02562 * 14 13 12 40 40 H 0.96998 * 120.00239 * 94.99491 * 17 5 3 41 41 H 1.09003 * 109.47187 * 299.99885 * 20 18 17 42 42 H 1.08999 * 109.47034 * 59.99600 * 20 18 17 43 43 H 1.08994 * 109.47320 * 299.99956 * 21 20 18 44 44 H 1.08997 * 109.46715 * 60.00477 * 21 20 18 45 45 H 0.97001 * 119.99788 * 179.97438 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4520 0.0000 0.0000 3 6 2.0614 1.1960 0.0000 4 8 1.4034 2.2094 0.0005 5 6 3.5663 1.2749 -0.0006 6 1 3.9557 0.7809 -0.8907 7 6 4.1138 0.5810 1.2484 8 6 5.6194 0.5516 1.1874 9 6 6.4255 1.5037 1.6761 10 6 7.7971 1.0613 1.3974 11 6 9.0621 1.5918 1.6461 12 6 10.1752 0.9072 1.2438 13 6 10.0530 -0.3112 0.5914 14 6 8.8105 -0.8515 0.3372 15 6 7.6665 -0.1716 0.7367 16 8 6.3482 -0.4340 0.6352 17 7 3.9818 2.6797 0.0002 18 6 4.0748 3.3555 -1.1623 19 8 3.8150 2.8005 -2.2088 20 6 4.5016 4.8008 -1.1615 21 6 4.5257 5.3261 -2.5983 22 6 4.9519 6.7716 -2.5975 23 1 5.1829 7.2660 -1.6655 24 6 5.0480 7.4627 -3.7866 25 7 4.7672 6.8605 -4.9217 26 14 5.5770 9.2542 -3.7858 27 1 5.8340 9.6938 -2.3907 28 1 6.8174 9.4045 -4.5881 29 1 4.5004 10.0885 -4.3776 30 1 -0.3633 0.5138 0.8900 31 1 -0.3634 0.5139 -0.8900 32 1 -0.3634 -1.0276 -0.0005 33 1 3.7321 -0.4390 1.2941 34 1 3.7968 1.1279 2.1363 35 1 6.1264 2.4138 2.1749 36 1 9.1623 2.5400 2.1531 37 1 11.1558 1.3172 1.4355 38 1 10.9405 -0.8439 0.2833 39 1 8.7266 -1.8008 -0.1710 40 1 4.1898 3.1236 0.8372 41 1 3.7972 5.3873 -0.5716 42 1 5.4978 4.8852 -0.7273 43 1 5.2302 4.7396 -3.1879 44 1 3.5296 5.2417 -3.0327 45 1 4.8345 7.3468 -5.7583 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000894908409.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:57:29 Heat of formation + Delta-G solvation = -98.810993 kcal Electronic energy + Delta-G solvation = -29644.952385 eV Core-core repulsion = 25401.006471 eV Total energy + Delta-G solvation = -4243.945913 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 345.145 amu Computer time = 0.68 seconds Orbital eigenvalues (eV) -42.67247 -40.78859 -39.11094 -38.09025 -36.62976 -35.68434 -33.44466 -33.05037 -31.88103 -30.79291 -30.57674 -29.19948 -27.62464 -25.91659 -24.80218 -23.10445 -22.08762 -21.95264 -21.25057 -20.69112 -19.78537 -17.92399 -17.55313 -17.44171 -17.02445 -16.74799 -16.42092 -16.29490 -15.69896 -15.58217 -15.42553 -14.67835 -14.42096 -14.34055 -14.07583 -13.77168 -13.60707 -13.36694 -13.16820 -13.09848 -12.64224 -12.44937 -12.32751 -12.25835 -12.13077 -12.03914 -11.86860 -11.14794 -11.11873 -10.93519 -10.92503 -10.72097 -10.56474 -10.27090 -9.94682 -9.67796 -9.25234 -9.11138 -9.02525 -8.79420 -8.34236 -8.30231 -5.93970 -3.98218 0.69373 1.19108 1.96323 2.16772 2.35364 2.51928 3.22615 3.34181 3.37649 3.41632 3.44972 3.54984 4.03167 4.30438 4.46271 4.49289 4.61145 4.70448 4.76195 4.88790 4.94760 4.97131 5.03330 5.05390 5.15779 5.25140 5.30505 5.37219 5.41153 5.49217 5.63890 5.67268 6.00272 6.06670 6.19259 6.22780 6.23134 6.25337 6.26272 6.39569 6.47720 6.88624 6.99237 7.62906 7.69896 7.77047 7.88295 8.09103 8.39723 8.67240 9.10099 9.65197 11.17096 Molecular weight = 345.15amu Principal moments of inertia in cm(-1) A = 0.006740 B = 0.003581 C = 0.002487 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 4153.205520 B = 7817.029955 C =11254.274870 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.035 3.965 2 O -0.361 6.361 3 C 0.448 3.552 4 O -0.484 6.484 5 C 0.161 3.839 6 H 0.130 0.870 7 C -0.045 4.045 8 C 0.035 3.965 9 C -0.189 4.189 10 C -0.128 4.128 11 C -0.068 4.068 12 C -0.137 4.137 13 C -0.094 4.094 14 C -0.108 4.108 15 C 0.055 3.945 16 O -0.189 6.189 17 N -0.722 5.722 18 C 0.520 3.480 19 O -0.528 6.528 20 C -0.127 4.127 21 C 0.037 3.963 22 C -0.525 4.525 23 H 0.057 0.943 24 C 0.058 3.942 25 N -0.890 5.890 26 Si 0.892 3.108 27 H -0.273 1.273 28 H -0.284 1.284 29 H -0.284 1.284 30 H 0.062 0.938 31 H 0.064 0.936 32 H 0.101 0.899 33 H 0.114 0.886 34 H 0.110 0.890 35 H 0.159 0.841 36 H 0.128 0.872 37 H 0.129 0.871 38 H 0.134 0.866 39 H 0.131 0.869 40 H 0.403 0.597 41 H 0.083 0.917 42 H 0.081 0.919 43 H 0.023 0.977 44 H 0.024 0.976 45 H 0.260 0.740 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.254 -18.825 18.730 26.754 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.058 4.058 2 O -0.277 6.277 3 C 0.287 3.713 4 O -0.369 6.369 5 C 0.052 3.948 6 H 0.148 0.852 7 C -0.083 4.083 8 C -0.012 4.012 9 C -0.208 4.208 10 C -0.129 4.129 11 C -0.086 4.086 12 C -0.155 4.155 13 C -0.112 4.112 14 C -0.126 4.126 15 C 0.008 3.992 16 O -0.091 6.091 17 N -0.377 5.377 18 C 0.309 3.691 19 O -0.402 6.402 20 C -0.166 4.166 21 C -0.001 4.001 22 C -0.564 4.564 23 H 0.075 0.925 24 C -0.144 4.144 25 N -0.528 5.528 26 Si 0.720 3.280 27 H -0.197 1.197 28 H -0.210 1.210 29 H -0.210 1.210 30 H 0.081 0.919 31 H 0.083 0.917 32 H 0.119 0.881 33 H 0.133 0.867 34 H 0.128 0.872 35 H 0.177 0.823 36 H 0.146 0.854 37 H 0.147 0.853 38 H 0.152 0.848 39 H 0.149 0.851 40 H 0.239 0.761 41 H 0.101 0.899 42 H 0.100 0.900 43 H 0.042 0.958 44 H 0.042 0.958 45 H 0.070 0.930 Dipole moment (debyes) X Y Z Total from point charges 2.704 -19.112 17.614 26.130 hybrid contribution 0.094 1.400 0.272 1.430 sum 2.797 -17.711 17.886 25.326 Atomic orbital electron populations 1.23271 0.76250 1.03601 1.02725 1.86485 1.23527 1.33351 1.84314 1.24290 0.92286 0.81743 0.72982 1.90712 1.66469 1.36279 1.43418 1.20287 0.86599 0.86178 1.01690 0.85209 1.20413 0.86054 1.04131 0.97663 1.21788 0.93190 0.88169 0.98079 1.22244 0.90307 1.01113 1.07181 1.19927 0.94282 0.95805 1.02877 1.20330 0.90099 0.99562 0.98644 1.20794 0.98712 0.95664 1.00346 1.20935 0.96164 0.95891 0.98254 1.19955 0.88394 1.00925 1.03342 1.19608 0.82736 0.95988 1.00901 1.83932 1.15607 1.43073 1.66487 1.46041 1.70846 1.10013 1.10849 1.21679 0.75078 0.90080 0.82239 1.90677 1.48050 1.69972 1.31452 1.21863 1.01431 0.88496 1.04847 1.18910 0.98490 0.95063 0.87607 1.21242 1.46065 0.96203 0.92856 0.92518 1.25024 0.95489 0.98228 0.95641 1.70016 1.48703 1.36452 0.97656 0.86537 0.78229 0.85182 0.78022 1.19732 1.21026 1.21025 0.91926 0.91734 0.88068 0.86735 0.87178 0.82310 0.85366 0.85332 0.84825 0.85072 0.76137 0.89896 0.90028 0.95811 0.95793 0.93029 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 0.32 10.56 101.05 1.07 1.39 16 2 O -0.36 -4.15 10.37 -39.26 -0.41 -4.56 16 3 C 0.45 6.19 7.29 36.00 0.26 6.45 16 4 O -0.48 -8.35 16.07 -18.76 -0.30 -8.66 16 5 C 0.16 2.01 2.47 -69.08 -0.17 1.84 16 6 H 0.13 1.85 7.58 -51.93 -0.39 1.45 16 7 C -0.05 -0.38 5.22 -27.88 -0.15 -0.52 16 8 C 0.04 0.37 6.25 -35.80 -0.22 0.15 16 9 C -0.19 -1.99 10.78 -37.62 -0.41 -2.40 16 10 C -0.13 -1.53 6.40 -105.16 -0.67 -2.20 16 11 C -0.07 -0.70 10.05 -39.69 -0.40 -1.10 16 12 C -0.14 -1.24 9.98 -39.94 -0.40 -1.64 16 13 C -0.09 -0.83 10.01 -39.54 -0.40 -1.23 16 14 C -0.11 -1.11 10.07 -39.46 -0.40 -1.51 16 15 C 0.05 0.68 7.42 -38.47 -0.29 0.40 16 16 O -0.19 -2.37 10.58 3.95 0.04 -2.33 16 17 N -0.72 -10.19 4.18 -54.93 -0.23 -10.42 16 18 C 0.52 10.26 7.66 -10.99 -0.08 10.17 16 19 O -0.53 -12.71 15.65 5.56 0.09 -12.62 16 20 C -0.13 -2.63 5.64 -27.88 -0.16 -2.79 16 21 C 0.04 1.01 4.26 -27.88 -0.12 0.90 16 22 C -0.53 -15.13 9.11 -34.44 -0.31 -15.45 16 23 H 0.06 1.54 7.74 -52.49 -0.41 1.13 16 24 C 0.06 1.70 5.46 -17.82 -0.10 1.61 16 25 N -0.89 -27.84 13.29 55.43 0.74 -27.10 16 26 Si 0.89 21.94 29.54 -169.99 -5.02 16.91 16 27 H -0.27 -6.46 7.11 56.52 0.40 -6.06 16 28 H -0.28 -6.91 7.11 56.52 0.40 -6.50 16 29 H -0.28 -6.93 7.11 56.52 0.40 -6.53 16 30 H 0.06 0.52 8.13 -51.93 -0.42 0.10 16 31 H 0.06 0.66 8.13 -51.93 -0.42 0.23 16 32 H 0.10 0.58 8.14 -51.93 -0.42 0.16 16 33 H 0.11 0.78 7.99 -51.93 -0.42 0.36 16 34 H 0.11 0.64 8.14 -51.93 -0.42 0.22 16 35 H 0.16 1.26 8.06 -52.48 -0.42 0.84 16 36 H 0.13 1.08 8.06 -52.49 -0.42 0.65 16 37 H 0.13 0.84 8.06 -52.49 -0.42 0.42 16 38 H 0.13 0.79 8.06 -52.49 -0.42 0.37 16 39 H 0.13 1.08 8.06 -52.49 -0.42 0.66 16 40 H 0.40 4.35 8.54 -40.82 -0.35 4.00 16 41 H 0.08 1.60 8.14 -51.93 -0.42 1.18 16 42 H 0.08 1.52 8.14 -51.93 -0.42 1.10 16 43 H 0.02 0.71 8.10 -51.93 -0.42 0.29 16 44 H 0.02 0.72 8.10 -51.93 -0.42 0.30 16 45 H 0.26 7.62 8.31 -40.82 -0.34 7.28 16 LS Contribution 395.10 15.07 5.95 5.95 Total: -1.00 -38.81 395.10 -8.27 -47.08 By element: Atomic # 1 Polarization: 7.86 SS G_CDS: -6.19 Total: 1.67 kcal Atomic # 6 Polarization: -2.99 SS G_CDS: -2.94 Total: -5.93 kcal Atomic # 7 Polarization: -38.03 SS G_CDS: 0.51 Total: -37.52 kcal Atomic # 8 Polarization: -27.59 SS G_CDS: -0.58 Total: -28.17 kcal Atomic # 14 Polarization: 21.94 SS G_CDS: -5.02 Total: 16.91 kcal Total LS contribution 5.95 Total: 5.95 kcal Total: -38.81 -8.27 -47.08 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000894908409.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -51.734 kcal (2) G-P(sol) polarization free energy of solvation -38.811 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -90.545 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.266 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -47.077 kcal (6) G-S(sol) free energy of system = (1) + (5) -98.811 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.69 seconds