Wall clock time and date at job start Wed Apr 1 2020 03:57:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45199 * 1 3 3 C 1.34231 * 117.00242 * 2 1 4 4 O 1.20833 * 119.99839 * 0.02562 * 3 2 1 5 5 C 1.50693 * 120.00323 * 180.02562 * 3 2 1 6 6 H 1.08996 * 109.47129 * 59.99522 * 5 3 2 7 7 C 1.53009 * 109.46873 * 300.00200 * 5 3 2 8 8 C 1.50704 * 109.46904 * 174.99985 * 7 5 3 9 9 C 1.33990 * 124.92202 * 89.99854 * 8 7 5 10 10 C 1.46787 * 106.18608 * 179.97438 * 9 8 7 11 11 C 1.39406 * 134.37016 * 180.02562 * 10 9 8 12 12 C 1.36736 * 119.71514 * 180.02562 * 11 10 9 13 13 C 1.38743 * 120.41735 * 359.95255 * 12 11 10 14 14 C 1.37855 * 120.68498 * 0.02562 * 13 12 11 15 15 C 1.38944 * 119.81775 * 0.02562 * 14 13 12 16 16 O 1.34443 * 124.92335 * 269.97214 * 8 7 5 17 17 N 1.46501 * 109.47473 * 180.02562 * 5 3 2 18 18 C 1.34779 * 119.99717 * 275.00057 * 17 5 3 19 19 O 1.21277 * 119.99936 * 359.97438 * 18 17 5 20 20 C 1.50695 * 119.99960 * 179.97438 * 18 17 5 21 21 C 1.53002 * 109.47074 * 179.97438 * 20 18 17 22 22 C 1.50702 * 109.46935 * 179.97438 * 21 20 18 23 23 H 1.07994 * 120.00200 * 0.02562 * 22 21 20 24 24 C 1.37873 * 119.99829 * 179.97438 * 22 21 20 25 25 N 1.31521 * 120.00129 * 0.02562 * 24 22 21 26 26 Si 1.86803 * 120.00091 * 180.02562 * 24 22 21 27 27 H 1.48505 * 109.46975 * 0.02562 * 26 24 22 28 28 H 1.48496 * 109.46999 * 120.00309 * 26 24 22 29 29 H 1.48501 * 109.47142 * 240.00824 * 26 24 22 30 30 H 1.09002 * 109.47092 * 299.99895 * 1 2 3 31 31 H 1.09000 * 109.47239 * 59.99792 * 1 2 3 32 32 H 1.08997 * 109.47373 * 179.97438 * 1 2 3 33 33 H 1.08996 * 109.47025 * 55.00214 * 7 5 3 34 34 H 1.09003 * 109.47047 * 294.99691 * 7 5 3 35 35 H 1.08003 * 126.91279 * 359.97438 * 9 8 7 36 36 H 1.07992 * 120.14243 * 359.94200 * 11 10 9 37 37 H 1.07998 * 119.79185 * 179.97438 * 12 11 10 38 38 H 1.07998 * 119.66172 * 180.30210 * 13 12 11 39 39 H 1.07999 * 120.08813 * 180.02562 * 14 13 12 40 40 H 0.96998 * 120.00239 * 94.99491 * 17 5 3 41 41 H 1.09003 * 109.47187 * 299.99885 * 20 18 17 42 42 H 1.08999 * 109.47034 * 59.99600 * 20 18 17 43 43 H 1.08994 * 109.47320 * 299.99956 * 21 20 18 44 44 H 1.08997 * 109.46715 * 60.00477 * 21 20 18 45 45 H 0.97001 * 119.99788 * 179.97438 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4520 0.0000 0.0000 3 6 2.0614 1.1960 0.0000 4 8 1.4034 2.2094 0.0005 5 6 3.5663 1.2749 -0.0006 6 1 3.9557 0.7809 -0.8907 7 6 4.1138 0.5810 1.2484 8 6 5.6194 0.5516 1.1874 9 6 6.4255 1.5037 1.6761 10 6 7.7971 1.0613 1.3974 11 6 9.0621 1.5918 1.6461 12 6 10.1752 0.9072 1.2438 13 6 10.0530 -0.3112 0.5914 14 6 8.8105 -0.8515 0.3372 15 6 7.6665 -0.1716 0.7367 16 8 6.3482 -0.4340 0.6352 17 7 3.9818 2.6797 0.0002 18 6 4.0748 3.3555 -1.1623 19 8 3.8150 2.8005 -2.2088 20 6 4.5016 4.8008 -1.1615 21 6 4.5257 5.3261 -2.5983 22 6 4.9519 6.7716 -2.5975 23 1 5.1829 7.2660 -1.6655 24 6 5.0480 7.4627 -3.7866 25 7 4.7672 6.8605 -4.9217 26 14 5.5770 9.2542 -3.7858 27 1 5.8340 9.6938 -2.3907 28 1 6.8174 9.4045 -4.5881 29 1 4.5004 10.0885 -4.3776 30 1 -0.3633 0.5138 0.8900 31 1 -0.3634 0.5139 -0.8900 32 1 -0.3634 -1.0276 -0.0005 33 1 3.7321 -0.4390 1.2941 34 1 3.7968 1.1279 2.1363 35 1 6.1264 2.4138 2.1749 36 1 9.1623 2.5400 2.1531 37 1 11.1558 1.3172 1.4355 38 1 10.9405 -0.8439 0.2833 39 1 8.7266 -1.8008 -0.1710 40 1 4.1898 3.1236 0.8372 41 1 3.7972 5.3873 -0.5716 42 1 5.4978 4.8852 -0.7273 43 1 5.2302 4.7396 -3.1879 44 1 3.5296 5.2417 -3.0327 45 1 4.8345 7.3468 -5.7583 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000894908409.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:57:28 Heat of formation + Delta-G solvation = -124.177792 kcal Electronic energy + Delta-G solvation = -29646.052372 eV Core-core repulsion = 25401.006471 eV Total energy + Delta-G solvation = -4245.045900 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 345.145 amu Computer time = 0.68 seconds Orbital eigenvalues (eV) -43.46340 -41.92128 -40.55469 -38.83261 -37.74356 -36.84013 -35.57998 -34.00585 -33.26165 -32.39484 -31.32304 -30.14424 -28.47780 -27.69327 -25.90659 -23.92724 -23.84830 -22.72962 -22.15958 -21.80744 -21.32649 -19.04695 -18.82720 -18.42507 -18.31054 -17.79941 -17.54324 -17.31302 -17.18583 -16.67254 -16.43902 -16.27709 -16.19974 -15.12288 -14.96954 -14.85866 -14.60111 -14.56242 -14.22473 -14.16639 -14.01267 -13.91090 -13.42369 -13.26023 -13.15679 -13.02822 -12.93973 -12.85073 -12.61526 -12.44856 -11.96013 -11.91478 -11.86617 -11.81596 -11.66669 -11.30887 -11.05558 -10.88671 -10.59734 -10.41948 -9.57172 -9.10264 -8.18762 -6.33002 -0.05951 0.42125 0.94909 1.19180 1.41461 1.42225 1.43433 1.56689 1.70859 1.78705 2.16394 2.43300 2.79986 3.14471 3.26207 3.42714 3.70675 3.80922 3.82186 3.97220 4.08807 4.17011 4.27178 4.29299 4.30225 4.32513 4.44349 4.48476 4.53010 4.56348 4.64863 4.68402 4.78237 4.97371 5.01704 5.14862 5.23604 5.26582 5.36573 5.48513 5.50466 5.54294 5.60384 5.77161 5.83549 6.15987 6.21501 6.41138 6.56450 6.85097 7.19376 7.37371 8.94362 Molecular weight = 345.15amu Principal moments of inertia in cm(-1) A = 0.006740 B = 0.003581 C = 0.002487 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 4153.205520 B = 7817.029955 C =11254.274870 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.028 3.972 2 O -0.355 6.355 3 C 0.453 3.547 4 O -0.523 6.523 5 C 0.161 3.839 6 H 0.110 0.890 7 C -0.031 4.031 8 C 0.022 3.978 9 C -0.192 4.192 10 C -0.154 4.154 11 C -0.083 4.083 12 C -0.140 4.140 13 C -0.093 4.093 14 C -0.125 4.125 15 C 0.023 3.977 16 O -0.208 6.208 17 N -0.698 5.698 18 C 0.521 3.479 19 O -0.583 6.583 20 C -0.117 4.117 21 C 0.043 3.957 22 C -0.541 4.541 23 H 0.078 0.922 24 C -0.007 4.007 25 N -0.939 5.939 26 Si 0.975 3.025 27 H -0.251 1.251 28 H -0.279 1.279 29 H -0.281 1.281 30 H 0.071 0.929 31 H 0.047 0.953 32 H 0.139 0.861 33 H 0.135 0.865 34 H 0.145 0.855 35 H 0.184 0.816 36 H 0.145 0.855 37 H 0.155 0.845 38 H 0.164 0.836 39 H 0.143 0.857 40 H 0.423 0.577 41 H 0.104 0.896 42 H 0.110 0.890 43 H -0.017 1.017 44 H -0.022 1.022 45 H 0.262 0.738 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.340 -18.276 21.599 28.624 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.065 4.065 2 O -0.270 6.270 3 C 0.294 3.706 4 O -0.411 6.411 5 C 0.053 3.947 6 H 0.128 0.872 7 C -0.067 4.067 8 C -0.025 4.025 9 C -0.211 4.211 10 C -0.155 4.155 11 C -0.101 4.101 12 C -0.158 4.158 13 C -0.110 4.110 14 C -0.143 4.143 15 C -0.024 4.024 16 O -0.111 6.111 17 N -0.353 5.353 18 C 0.310 3.690 19 O -0.462 6.462 20 C -0.156 4.156 21 C 0.005 3.995 22 C -0.579 4.579 23 H 0.096 0.904 24 C -0.205 4.205 25 N -0.579 5.579 26 Si 0.799 3.201 27 H -0.174 1.174 28 H -0.205 1.205 29 H -0.207 1.207 30 H 0.090 0.910 31 H 0.066 0.934 32 H 0.157 0.843 33 H 0.153 0.847 34 H 0.163 0.837 35 H 0.202 0.798 36 H 0.162 0.838 37 H 0.173 0.827 38 H 0.181 0.819 39 H 0.161 0.839 40 H 0.262 0.738 41 H 0.122 0.878 42 H 0.128 0.872 43 H 0.001 0.999 44 H -0.004 1.004 45 H 0.071 0.929 Dipole moment (debyes) X Y Z Total from point charges 3.797 -18.595 20.571 27.989 hybrid contribution -0.232 1.100 -0.624 1.286 sum 3.565 -17.495 19.947 26.771 Atomic orbital electron populations 1.23592 0.74580 1.05985 1.02384 1.86480 1.25097 1.31879 1.83566 1.24387 0.92552 0.81802 0.71864 1.90701 1.67341 1.37562 1.45515 1.20410 0.86229 0.84873 1.03222 0.87244 1.20491 0.84581 1.05215 0.96461 1.22161 0.93986 0.88096 0.98284 1.22629 0.89785 1.01777 1.06914 1.20322 0.95535 0.96108 1.03553 1.20670 0.89964 1.00453 0.98985 1.21210 0.99634 0.95537 0.99389 1.21365 0.96595 0.95914 0.97169 1.20329 0.88586 1.01676 1.03741 1.20084 0.83104 0.97061 1.02161 1.83896 1.16007 1.44052 1.67100 1.45638 1.69008 1.10726 1.09943 1.21423 0.74715 0.89901 0.82926 1.90660 1.50788 1.70935 1.33768 1.21630 1.03815 0.89552 1.00629 1.18681 0.94580 0.95036 0.91169 1.21730 1.45630 0.96733 0.93821 0.90424 1.26156 0.95305 1.03926 0.95087 1.70198 1.50111 1.38938 0.98634 0.85258 0.77645 0.78143 0.79104 1.17428 1.20525 1.20712 0.91036 0.93374 0.84337 0.84742 0.83726 0.79836 0.83758 0.82686 0.81884 0.83882 0.73775 0.87770 0.87182 0.99899 1.00354 0.92884 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.46 10.56 113.37 1.20 1.66 16 2 O -0.35 -7.77 10.37 -51.43 -0.53 -8.30 16 3 C 0.45 12.29 7.29 71.23 0.52 12.81 16 4 O -0.52 -18.04 16.07 21.94 0.35 -17.68 16 5 C 0.16 3.92 2.47 44.25 0.11 4.03 16 6 H 0.11 3.22 7.58 -2.39 -0.02 3.21 16 7 C -0.03 -0.45 5.22 29.85 0.16 -0.29 16 8 C 0.02 0.44 6.25 24.72 0.15 0.59 16 9 C -0.19 -3.76 10.78 23.54 0.25 -3.51 16 10 C -0.15 -3.58 6.40 -20.21 -0.13 -3.70 16 11 C -0.08 -1.60 10.05 22.20 0.22 -1.37 16 12 C -0.14 -2.26 9.98 22.04 0.22 -2.04 16 13 C -0.09 -1.49 10.01 22.30 0.22 -1.26 16 14 C -0.13 -2.54 10.07 22.35 0.23 -2.31 16 15 C 0.02 0.57 7.42 22.99 0.17 0.74 16 16 O -0.21 -5.24 10.58 -8.80 -0.09 -5.34 16 17 N -0.70 -19.12 4.18 -446.10 -1.87 -20.98 16 18 C 0.52 20.95 7.66 87.66 0.67 21.62 16 19 O -0.58 -29.67 15.65 -3.02 -0.05 -29.71 16 20 C -0.12 -4.84 5.64 29.85 0.17 -4.67 16 21 C 0.04 2.47 4.26 29.85 0.13 2.60 16 22 C -0.54 -31.40 9.11 25.60 0.23 -31.17 16 23 H 0.08 4.08 7.74 -2.91 -0.02 4.06 16 24 C -0.01 -0.44 5.46 84.65 0.46 0.02 16 25 N -0.94 -60.72 13.29 21.45 0.28 -60.43 16 26 Si 0.97 44.93 29.54 68.60 2.03 46.96 16 27 H -0.25 -10.60 7.11 99.48 0.71 -9.89 16 28 H -0.28 -12.59 7.11 99.48 0.71 -11.88 16 29 H -0.28 -12.75 7.11 99.48 0.71 -12.05 16 30 H 0.07 1.09 8.13 -2.39 -0.02 1.07 16 31 H 0.05 0.97 8.13 -2.39 -0.02 0.95 16 32 H 0.14 1.25 8.14 -2.39 -0.02 1.23 16 33 H 0.13 1.50 7.99 -2.39 -0.02 1.48 16 34 H 0.14 1.15 8.14 -2.39 -0.02 1.13 16 35 H 0.18 2.40 8.06 -2.91 -0.02 2.38 16 36 H 0.14 2.15 8.06 -2.91 -0.02 2.13 16 37 H 0.16 1.59 8.06 -2.91 -0.02 1.56 16 38 H 0.16 1.52 8.06 -2.91 -0.02 1.50 16 39 H 0.14 2.35 8.06 -2.91 -0.02 2.33 16 40 H 0.42 8.11 8.54 -92.71 -0.79 7.32 16 41 H 0.10 3.88 8.14 -2.39 -0.02 3.86 16 42 H 0.11 3.92 8.14 -2.39 -0.02 3.90 16 43 H -0.02 -1.13 8.10 -2.39 -0.02 -1.15 16 44 H -0.02 -1.44 8.10 -2.39 -0.02 -1.46 16 45 H 0.26 15.84 8.31 -92.71 -0.77 15.07 16 Total: -1.00 -90.36 395.10 5.34 -85.03 By element: Atomic # 1 Polarization: 16.52 SS G_CDS: 0.23 Total: 16.74 kcal Atomic # 6 Polarization: -11.26 SS G_CDS: 4.98 Total: -6.28 kcal Atomic # 7 Polarization: -79.84 SS G_CDS: -1.58 Total: -81.42 kcal Atomic # 8 Polarization: -60.71 SS G_CDS: -0.32 Total: -61.03 kcal Atomic # 14 Polarization: 44.93 SS G_CDS: 2.03 Total: 46.96 kcal Total: -90.36 5.34 -85.03 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000894908409.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -39.151 kcal (2) G-P(sol) polarization free energy of solvation -90.362 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -129.513 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.335 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -85.027 kcal (6) G-S(sol) free energy of system = (1) + (5) -124.178 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.69 seconds