Wall clock time and date at job start Wed Apr 1 2020 03:44:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42898 * 1 3 3 C 1.42898 * 114.00030 * 2 1 4 4 C 1.53008 * 109.47382 * 179.97438 * 3 2 1 5 5 N 1.46498 * 109.46810 * 64.99533 * 4 3 2 6 6 C 1.46506 * 120.00053 * 90.00160 * 5 4 3 7 7 C 1.50703 * 109.46928 * 83.60118 * 6 5 4 8 8 H 1.08004 * 119.99734 * 0.02562 * 7 6 5 9 9 C 1.37878 * 120.00096 * 180.02562 * 7 6 5 10 10 N 1.31515 * 119.99871 * 359.97438 * 9 7 6 11 11 Si 1.86800 * 119.99982 * 179.97438 * 9 7 6 12 12 H 1.48499 * 109.46750 * 60.00091 * 11 9 7 13 13 H 1.48501 * 109.46832 * 180.02562 * 11 9 7 14 14 H 1.48496 * 109.47046 * 300.00138 * 11 9 7 15 15 C 1.34773 * 120.00326 * 270.00368 * 5 4 3 16 16 O 1.21619 * 120.00075 * 5.19439 * 15 5 4 17 17 C 1.47326 * 120.00552 * 185.20164 * 15 5 4 18 18 C 1.40787 * 119.81299 * 53.17986 * 17 15 5 19 19 C 1.35579 * 120.91902 * 179.77626 * 18 17 15 20 20 C 1.40882 * 120.22769 * 0.48371 * 19 18 17 21 21 C 1.40482 * 120.92260 * 179.74078 * 20 19 18 22 22 C 1.36094 * 119.80371 * 180.02562 * 21 20 19 23 23 C 1.39739 * 120.92122 * 0.02562 * 22 21 20 24 24 O 1.35908 * 119.60787 * 179.97438 * 23 22 21 25 25 C 1.36651 * 120.78311 * 359.97438 * 23 22 21 26 26 C 1.40369 * 119.65141 * 359.97438 * 25 23 22 27 27 C 1.39241 * 119.81510 * 233.46332 * 17 15 5 28 28 O 1.35466 * 120.35670 * 359.97438 * 27 17 15 29 29 H 1.09003 * 109.46888 * 180.02562 * 1 2 3 30 30 H 1.08999 * 109.47174 * 300.00565 * 1 2 3 31 31 H 1.09005 * 109.46591 * 60.00620 * 1 2 3 32 32 H 1.08996 * 109.47745 * 59.99700 * 3 2 1 33 33 H 1.08998 * 109.46938 * 299.99129 * 3 2 1 34 34 H 1.09001 * 109.46810 * 305.00253 * 4 3 2 35 35 H 1.08993 * 109.47054 * 184.99704 * 4 3 2 36 36 H 1.09001 * 109.47158 * 203.59882 * 6 5 4 37 37 H 1.08997 * 109.46899 * 323.60172 * 6 5 4 38 38 H 0.96994 * 119.99758 * 179.97438 * 10 9 7 39 39 H 1.07996 * 119.54268 * 0.02562 * 18 17 15 40 40 H 1.08000 * 119.88140 * 180.26204 * 19 18 17 41 41 H 1.07996 * 120.09182 * 0.07245 * 21 20 19 42 42 H 1.08006 * 119.53904 * 180.02562 * 22 21 20 43 43 H 0.96703 * 114.00166 * 270.01784 * 24 23 22 44 44 H 1.08006 * 120.17955 * 180.02562 * 25 23 22 45 45 H 0.96703 * 114.00074 * 90.00487 * 28 27 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3054 0.0000 4 6 3.5355 1.1847 0.0006 5 7 3.9767 0.5639 -1.2508 6 6 4.2883 1.3997 -2.4131 7 6 5.7021 1.9091 -2.3008 8 1 6.3081 1.6372 -1.4492 9 6 6.2221 2.7224 -3.2854 10 7 5.4843 3.0531 -4.3226 11 14 7.9744 3.3544 -3.1459 12 1 8.9129 2.2046 -3.0976 13 1 8.2898 4.2025 -4.3234 14 1 8.1130 4.1590 -1.9055 15 6 4.0959 -0.7760 -1.3331 16 8 3.7478 -1.4758 -0.4013 17 6 4.6480 -1.3932 -2.5516 18 6 5.8936 -0.9662 -3.0498 19 6 6.4247 -1.5217 -4.1667 20 6 5.7281 -2.5343 -4.8553 21 6 6.2622 -3.1162 -6.0170 22 6 5.5695 -4.0924 -6.6645 23 6 4.3289 -4.5274 -6.1907 24 8 3.6598 -5.5037 -6.8587 25 6 3.7806 -3.9827 -5.0638 26 6 4.4711 -2.9747 -4.3729 27 6 3.9321 -2.3913 -3.2075 28 8 2.7311 -2.7982 -2.7308 29 1 -0.3633 -1.0277 0.0005 30 1 -0.3633 0.5139 0.8899 31 1 -0.3633 0.5138 -0.8901 32 1 1.6886 1.8464 0.8899 33 1 1.6887 1.8463 -0.8901 34 1 3.8508 0.5685 0.8427 35 1 3.9784 2.1765 0.0902 36 1 4.1862 0.8088 -3.3233 37 1 3.5996 2.2438 -2.4486 38 1 5.8500 3.6255 -5.0150 39 1 6.4355 -0.1881 -2.5328 40 1 7.3835 -1.1843 -4.5317 41 1 7.2201 -2.7903 -6.3946 42 1 5.9844 -4.5371 -7.5570 43 1 3.0634 -5.1733 -7.5445 44 1 2.8213 -4.3266 -4.7060 45 1 1.9794 -2.3037 -3.0850 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000896633745.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:44:14 Heat of formation + Delta-G solvation = -113.072593 kcal Electronic energy + Delta-G solvation = -31057.167409 eV Core-core repulsion = 26812.603067 eV Total energy + Delta-G solvation = -4244.564343 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 345.145 amu Computer time = 0.61 seconds Orbital eigenvalues (eV) -40.57680 -39.18998 -38.03453 -37.18320 -36.80910 -35.00825 -34.57818 -32.69677 -31.55751 -30.49248 -29.07230 -28.16725 -27.06891 -26.02955 -24.13622 -23.10690 -22.79513 -22.10831 -21.56545 -19.26595 -18.48290 -18.16370 -16.89241 -16.57350 -16.28186 -16.18356 -15.97898 -15.76388 -15.24266 -15.08308 -14.61626 -14.58480 -14.51225 -14.29578 -13.62505 -13.39028 -13.35512 -13.23275 -12.69009 -12.46749 -12.22483 -12.19308 -11.83249 -11.63711 -11.61163 -11.33917 -11.27522 -11.05160 -10.88400 -10.72654 -10.63795 -10.46823 -10.31303 -10.10906 -9.81279 -9.56092 -9.33033 -8.97778 -8.64805 -8.19300 -7.70454 -7.46355 -6.25960 -4.33391 0.64018 1.09956 2.13766 2.96009 3.17000 3.23532 3.25674 3.61601 3.86597 4.12722 4.19649 4.27326 4.27998 4.47488 4.84773 5.02831 5.05756 5.26407 5.29653 5.38802 5.43217 5.46913 5.57147 5.61924 5.63860 5.66367 5.74906 5.83310 5.85830 6.04147 6.07212 6.21574 6.31979 6.36106 6.39926 6.49330 6.74176 6.77889 6.81275 6.95999 7.13350 7.19482 7.46044 7.59719 7.64370 7.67574 7.92872 7.97466 8.35059 8.71450 9.07815 9.33461 10.79963 Molecular weight = 345.15amu Principal moments of inertia in cm(-1) A = 0.007918 B = 0.005095 C = 0.003363 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3535.233284 B = 5494.146249 C = 8325.063298 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.032 3.968 2 O -0.365 6.365 3 C 0.044 3.956 4 C 0.125 3.875 5 N -0.592 5.592 6 C 0.237 3.763 7 C -0.541 4.541 8 H 0.063 0.937 9 C 0.070 3.930 10 N -0.884 5.884 11 Si 0.891 3.109 12 H -0.273 1.273 13 H -0.286 1.286 14 H -0.275 1.275 15 C 0.560 3.440 16 O -0.531 6.531 17 C -0.124 4.124 18 C -0.045 4.045 19 C -0.127 4.127 20 C -0.032 4.032 21 C -0.092 4.092 22 C -0.138 4.138 23 C 0.088 3.912 24 O -0.501 6.501 25 C -0.115 4.115 26 C -0.071 4.071 27 C 0.150 3.850 28 O -0.476 6.476 29 H 0.080 0.920 30 H 0.033 0.967 31 H 0.034 0.966 32 H 0.048 0.952 33 H 0.049 0.951 34 H 0.079 0.921 35 H 0.095 0.905 36 H 0.040 0.960 37 H 0.032 0.968 38 H 0.266 0.734 39 H 0.160 0.840 40 H 0.130 0.870 41 H 0.132 0.868 42 H 0.126 0.874 43 H 0.386 0.614 44 H 0.134 0.866 45 H 0.386 0.614 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.804 -6.438 -3.032 8.586 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.065 4.065 2 O -0.283 6.283 3 C -0.034 4.034 4 C 0.001 3.999 5 N -0.323 5.323 6 C 0.117 3.883 7 C -0.579 4.579 8 H 0.081 0.919 9 C -0.134 4.134 10 N -0.522 5.522 11 Si 0.718 3.282 12 H -0.199 1.199 13 H -0.211 1.211 14 H -0.201 1.201 15 C 0.347 3.653 16 O -0.409 6.409 17 C -0.127 4.127 18 C -0.063 4.063 19 C -0.145 4.145 20 C -0.032 4.032 21 C -0.110 4.110 22 C -0.157 4.157 23 C 0.044 3.956 24 O -0.311 6.311 25 C -0.134 4.134 26 C -0.072 4.072 27 C 0.104 3.896 28 O -0.286 6.286 29 H 0.098 0.902 30 H 0.051 0.949 31 H 0.052 0.948 32 H 0.066 0.934 33 H 0.067 0.933 34 H 0.097 0.903 35 H 0.113 0.887 36 H 0.058 0.942 37 H 0.050 0.950 38 H 0.076 0.924 39 H 0.178 0.822 40 H 0.148 0.852 41 H 0.150 0.850 42 H 0.144 0.856 43 H 0.241 0.759 44 H 0.151 0.849 45 H 0.242 0.758 Dipole moment (debyes) X Y Z Total from point charges -4.245 -7.621 -2.023 8.955 hybrid contribution 0.102 1.551 -0.816 1.755 sum -4.143 -6.070 -2.839 7.878 Atomic orbital electron populations 1.22669 0.82688 1.02097 0.99085 1.88169 1.18031 1.27013 1.95130 1.23049 0.95487 0.85163 0.99667 1.21303 0.91080 0.99423 0.88077 1.48040 1.64791 1.05598 1.13898 1.19441 0.96113 0.90043 0.82671 1.21419 0.98162 1.30961 1.07382 0.91868 1.24913 0.97855 0.95627 0.94982 1.69908 1.36715 1.35595 1.09949 0.86665 0.84571 0.79226 0.77739 1.19857 1.21139 1.20073 1.17926 0.78308 0.82358 0.86696 1.90757 1.48974 1.62014 1.39132 1.20367 0.97640 0.97001 0.97715 1.21498 0.93483 0.96199 0.95070 1.20868 1.00526 0.96659 0.96402 1.18104 0.93326 0.96498 0.95252 1.20925 0.99844 0.95910 0.94325 1.21060 0.95506 0.98009 1.01096 1.18019 0.92555 0.91192 0.93796 1.84843 1.60612 1.32086 1.53547 1.21120 1.00749 0.95681 0.95819 1.18018 0.95544 0.98386 0.95244 1.18323 0.87584 0.92645 0.91094 1.84740 1.13714 1.60886 1.69251 0.90161 0.94862 0.94764 0.93359 0.93299 0.90298 0.88684 0.94227 0.95037 0.92390 0.82231 0.85222 0.84997 0.85644 0.75944 0.84857 0.75793 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.42 11.01 101.05 1.11 1.53 16 2 O -0.37 -6.49 9.27 -48.35 -0.45 -6.94 16 3 C 0.04 0.71 6.28 37.16 0.23 0.95 16 4 C 0.12 2.26 5.86 -4.04 -0.02 2.24 16 5 N -0.59 -12.27 2.44 -176.36 -0.43 -12.70 16 6 C 0.24 5.36 4.67 -5.19 -0.02 5.33 16 7 C -0.54 -12.85 6.70 -34.44 -0.23 -13.08 16 8 H 0.06 1.51 7.64 -52.48 -0.40 1.11 16 9 C 0.07 1.72 5.46 -17.82 -0.10 1.62 16 10 N -0.88 -22.92 13.29 55.43 0.74 -22.18 16 11 Si 0.89 19.14 29.54 -169.99 -5.02 14.12 16 12 H -0.27 -5.76 7.11 56.52 0.40 -5.36 16 13 H -0.29 -6.19 7.11 56.52 0.40 -5.79 16 14 H -0.28 -5.93 7.11 56.52 0.40 -5.53 16 15 C 0.56 12.20 6.47 -12.57 -0.08 12.12 16 16 O -0.53 -12.79 15.26 -15.29 -0.23 -13.02 16 17 C -0.12 -2.52 4.51 -104.87 -0.47 -2.99 16 18 C -0.04 -0.88 7.73 -39.57 -0.31 -1.18 16 19 C -0.13 -2.20 9.72 -39.53 -0.38 -2.58 16 20 C -0.03 -0.52 5.75 -106.75 -0.61 -1.13 16 21 C -0.09 -1.25 9.75 -39.51 -0.39 -1.64 16 22 C -0.14 -1.75 9.88 -39.79 -0.39 -2.15 16 23 C 0.09 1.19 6.65 -39.59 -0.26 0.93 16 24 O -0.50 -5.78 13.47 -19.45 -0.26 -6.05 16 25 C -0.12 -1.72 9.47 -39.35 -0.37 -2.09 16 26 C -0.07 -1.21 5.75 -106.73 -0.61 -1.83 16 27 C 0.15 2.79 6.71 -38.15 -0.26 2.54 16 28 O -0.48 -8.32 11.84 -23.85 -0.28 -8.61 16 29 H 0.08 0.98 8.14 -51.93 -0.42 0.55 16 30 H 0.03 0.38 8.14 -51.93 -0.42 -0.05 16 31 H 0.03 0.41 8.14 -51.93 -0.42 -0.01 16 32 H 0.05 0.65 8.14 -51.93 -0.42 0.23 16 33 H 0.05 0.79 8.14 -51.93 -0.42 0.37 16 34 H 0.08 1.47 7.50 -51.93 -0.39 1.08 16 35 H 0.10 1.60 8.07 -51.93 -0.42 1.18 16 36 H 0.04 0.96 6.26 -51.93 -0.32 0.63 16 37 H 0.03 0.75 8.12 -51.93 -0.42 0.33 16 38 H 0.27 6.64 8.31 -40.82 -0.34 6.30 16 39 H 0.16 3.35 5.42 -52.49 -0.28 3.06 16 40 H 0.13 1.97 8.06 -52.49 -0.42 1.55 16 41 H 0.13 1.46 8.06 -52.49 -0.42 1.04 16 42 H 0.13 1.28 8.06 -52.48 -0.42 0.86 16 43 H 0.39 2.52 9.06 45.56 0.41 2.93 16 44 H 0.13 1.84 7.61 -52.48 -0.40 1.44 16 45 H 0.39 5.14 9.06 45.56 0.41 5.55 16 LS Contribution 380.71 15.07 5.74 5.74 Total: -1.00 -31.87 380.71 -7.71 -39.57 By element: Atomic # 1 Polarization: 15.82 SS G_CDS: -4.33 Total: 11.49 kcal Atomic # 6 Polarization: 1.76 SS G_CDS: -3.17 Total: -1.41 kcal Atomic # 7 Polarization: -35.19 SS G_CDS: 0.31 Total: -34.88 kcal Atomic # 8 Polarization: -33.39 SS G_CDS: -1.23 Total: -34.62 kcal Atomic # 14 Polarization: 19.14 SS G_CDS: -5.02 Total: 14.12 kcal Total LS contribution 5.74 Total: 5.74 kcal Total: -31.87 -7.71 -39.57 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000896633745.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -73.498 kcal (2) G-P(sol) polarization free energy of solvation -31.868 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -105.366 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.706 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.575 kcal (6) G-S(sol) free energy of system = (1) + (5) -113.073 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.61 seconds