Wall clock time and date at job start Wed Apr 1 2020 03:44:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42898 * 1 3 3 C 1.42898 * 114.00030 * 2 1 4 4 C 1.53008 * 109.47382 * 179.97438 * 3 2 1 5 5 N 1.46498 * 109.46810 * 64.99533 * 4 3 2 6 6 C 1.46506 * 120.00053 * 90.00160 * 5 4 3 7 7 C 1.50703 * 109.46928 * 83.60118 * 6 5 4 8 8 H 1.08004 * 119.99734 * 0.02562 * 7 6 5 9 9 C 1.37878 * 120.00096 * 180.02562 * 7 6 5 10 10 N 1.31515 * 119.99871 * 359.97438 * 9 7 6 11 11 Si 1.86800 * 119.99982 * 179.97438 * 9 7 6 12 12 H 1.48499 * 109.46750 * 60.00091 * 11 9 7 13 13 H 1.48501 * 109.46832 * 180.02562 * 11 9 7 14 14 H 1.48496 * 109.47046 * 300.00138 * 11 9 7 15 15 C 1.34773 * 120.00326 * 270.00368 * 5 4 3 16 16 O 1.21619 * 120.00075 * 5.19439 * 15 5 4 17 17 C 1.47326 * 120.00552 * 185.20164 * 15 5 4 18 18 C 1.40787 * 119.81299 * 53.17986 * 17 15 5 19 19 C 1.35579 * 120.91902 * 179.77626 * 18 17 15 20 20 C 1.40882 * 120.22769 * 0.48371 * 19 18 17 21 21 C 1.40482 * 120.92260 * 179.74078 * 20 19 18 22 22 C 1.36094 * 119.80371 * 180.02562 * 21 20 19 23 23 C 1.39739 * 120.92122 * 0.02562 * 22 21 20 24 24 O 1.35908 * 119.60787 * 179.97438 * 23 22 21 25 25 C 1.36651 * 120.78311 * 359.97438 * 23 22 21 26 26 C 1.40369 * 119.65141 * 359.97438 * 25 23 22 27 27 C 1.39241 * 119.81510 * 233.46332 * 17 15 5 28 28 O 1.35466 * 120.35670 * 359.97438 * 27 17 15 29 29 H 1.09003 * 109.46888 * 180.02562 * 1 2 3 30 30 H 1.08999 * 109.47174 * 300.00565 * 1 2 3 31 31 H 1.09005 * 109.46591 * 60.00620 * 1 2 3 32 32 H 1.08996 * 109.47745 * 59.99700 * 3 2 1 33 33 H 1.08998 * 109.46938 * 299.99129 * 3 2 1 34 34 H 1.09001 * 109.46810 * 305.00253 * 4 3 2 35 35 H 1.08993 * 109.47054 * 184.99704 * 4 3 2 36 36 H 1.09001 * 109.47158 * 203.59882 * 6 5 4 37 37 H 1.08997 * 109.46899 * 323.60172 * 6 5 4 38 38 H 0.96994 * 119.99758 * 179.97438 * 10 9 7 39 39 H 1.07996 * 119.54268 * 0.02562 * 18 17 15 40 40 H 1.08000 * 119.88140 * 180.26204 * 19 18 17 41 41 H 1.07996 * 120.09182 * 0.07245 * 21 20 19 42 42 H 1.08006 * 119.53904 * 180.02562 * 22 21 20 43 43 H 0.96703 * 114.00166 * 270.01784 * 24 23 22 44 44 H 1.08006 * 120.17955 * 180.02562 * 25 23 22 45 45 H 0.96703 * 114.00074 * 90.00487 * 28 27 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3054 0.0000 4 6 3.5355 1.1847 0.0006 5 7 3.9767 0.5639 -1.2508 6 6 4.2883 1.3997 -2.4131 7 6 5.7021 1.9091 -2.3008 8 1 6.3081 1.6372 -1.4492 9 6 6.2221 2.7224 -3.2854 10 7 5.4843 3.0531 -4.3226 11 14 7.9744 3.3544 -3.1459 12 1 8.9129 2.2046 -3.0976 13 1 8.2898 4.2025 -4.3234 14 1 8.1130 4.1590 -1.9055 15 6 4.0959 -0.7760 -1.3331 16 8 3.7478 -1.4758 -0.4013 17 6 4.6480 -1.3932 -2.5516 18 6 5.8936 -0.9662 -3.0498 19 6 6.4247 -1.5217 -4.1667 20 6 5.7281 -2.5343 -4.8553 21 6 6.2622 -3.1162 -6.0170 22 6 5.5695 -4.0924 -6.6645 23 6 4.3289 -4.5274 -6.1907 24 8 3.6598 -5.5037 -6.8587 25 6 3.7806 -3.9827 -5.0638 26 6 4.4711 -2.9747 -4.3729 27 6 3.9321 -2.3913 -3.2075 28 8 2.7311 -2.7982 -2.7308 29 1 -0.3633 -1.0277 0.0005 30 1 -0.3633 0.5139 0.8899 31 1 -0.3633 0.5138 -0.8901 32 1 1.6886 1.8464 0.8899 33 1 1.6887 1.8463 -0.8901 34 1 3.8508 0.5685 0.8427 35 1 3.9784 2.1765 0.0902 36 1 4.1862 0.8088 -3.3233 37 1 3.5996 2.2438 -2.4486 38 1 5.8500 3.6255 -5.0150 39 1 6.4355 -0.1881 -2.5328 40 1 7.3835 -1.1843 -4.5317 41 1 7.2201 -2.7903 -6.3946 42 1 5.9844 -4.5371 -7.5570 43 1 3.0634 -5.1733 -7.5445 44 1 2.8213 -4.3266 -4.7060 45 1 1.9794 -2.3037 -3.0850 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000896633745.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:44:13 Heat of formation + Delta-G solvation = -134.958803 kcal Electronic energy + Delta-G solvation = -31058.116466 eV Core-core repulsion = 26812.603067 eV Total energy + Delta-G solvation = -4245.513400 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 345.145 amu Computer time = 0.74 seconds Orbital eigenvalues (eV) -41.88727 -40.61791 -39.26319 -38.50177 -38.06930 -36.67776 -35.84841 -34.52941 -32.75046 -31.87293 -30.44375 -29.47158 -28.79099 -27.19499 -25.47488 -24.88643 -24.01902 -23.44487 -22.85931 -20.66204 -19.76586 -19.41612 -18.52750 -18.25446 -17.70362 -17.47029 -17.23800 -17.03761 -16.59733 -16.51866 -16.06899 -15.89744 -15.86513 -15.56598 -14.88888 -14.82446 -14.72912 -14.47066 -14.19628 -14.02280 -13.60499 -13.47128 -13.35161 -13.04883 -12.95959 -12.88126 -12.64430 -12.55138 -12.51927 -12.09686 -11.97455 -11.85571 -11.71548 -11.59292 -11.45614 -10.77180 -10.71040 -10.54601 -10.48705 -9.49721 -9.39726 -8.72215 -8.14614 -6.27446 -0.60646 -0.13683 0.89843 1.46474 1.48743 1.54826 1.63443 2.09072 2.31580 2.48947 2.90987 2.98868 3.14531 3.16358 3.24925 3.64827 3.81288 4.01091 4.03818 4.16670 4.23511 4.29256 4.31878 4.39493 4.44825 4.53704 4.54905 4.64399 4.68214 4.82720 4.87330 4.90803 4.97475 5.02278 5.13105 5.13953 5.24302 5.36095 5.44743 5.60821 5.70500 5.71558 5.86832 5.88070 6.09463 6.36200 6.60068 6.67147 6.84619 6.85929 7.35324 7.47263 8.90848 Molecular weight = 345.15amu Principal moments of inertia in cm(-1) A = 0.007918 B = 0.005095 C = 0.003363 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3535.233284 B = 5494.146249 C = 8325.063298 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.028 3.972 2 O -0.401 6.401 3 C 0.051 3.949 4 C 0.118 3.882 5 N -0.591 5.591 6 C 0.257 3.743 7 C -0.537 4.537 8 H 0.058 0.942 9 C 0.033 3.967 10 N -0.915 5.915 11 Si 0.946 3.054 12 H -0.266 1.266 13 H -0.286 1.286 14 H -0.274 1.274 15 C 0.560 3.440 16 O -0.563 6.563 17 C -0.156 4.156 18 C -0.069 4.069 19 C -0.122 4.122 20 C -0.045 4.045 21 C -0.091 4.091 22 C -0.129 4.129 23 C 0.106 3.894 24 O -0.505 6.505 25 C -0.133 4.133 26 C -0.082 4.082 27 C 0.148 3.852 28 O -0.486 6.486 29 H 0.086 0.914 30 H 0.054 0.946 31 H 0.042 0.958 32 H 0.080 0.920 33 H 0.045 0.955 34 H 0.070 0.930 35 H 0.104 0.896 36 H 0.022 0.978 37 H 0.017 0.983 38 H 0.267 0.733 39 H 0.139 0.861 40 H 0.150 0.850 41 H 0.162 0.838 42 H 0.160 0.840 43 H 0.411 0.589 44 H 0.138 0.862 45 H 0.401 0.599 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.328 -7.380 -4.821 9.820 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.069 4.069 2 O -0.320 6.320 3 C -0.027 4.027 4 C -0.005 4.005 5 N -0.321 5.321 6 C 0.137 3.863 7 C -0.576 4.576 8 H 0.076 0.924 9 C -0.168 4.168 10 N -0.554 5.554 11 Si 0.772 3.228 12 H -0.191 1.191 13 H -0.211 1.211 14 H -0.200 1.200 15 C 0.348 3.652 16 O -0.443 6.443 17 C -0.160 4.160 18 C -0.087 4.087 19 C -0.139 4.139 20 C -0.046 4.046 21 C -0.108 4.108 22 C -0.147 4.147 23 C 0.061 3.939 24 O -0.319 6.319 25 C -0.152 4.152 26 C -0.083 4.083 27 C 0.101 3.899 28 O -0.298 6.298 29 H 0.105 0.895 30 H 0.072 0.928 31 H 0.061 0.939 32 H 0.098 0.902 33 H 0.063 0.937 34 H 0.088 0.912 35 H 0.122 0.878 36 H 0.040 0.960 37 H 0.035 0.965 38 H 0.076 0.924 39 H 0.157 0.843 40 H 0.167 0.833 41 H 0.179 0.821 42 H 0.177 0.823 43 H 0.271 0.729 44 H 0.156 0.844 45 H 0.259 0.741 Dipole moment (debyes) X Y Z Total from point charges -3.799 -8.547 -3.818 10.102 hybrid contribution -0.142 1.679 -0.383 1.728 sum -3.941 -6.868 -4.201 8.964 Atomic orbital electron populations 1.22846 0.80483 1.03046 1.00485 1.88120 1.20580 1.27866 1.95417 1.22974 0.93733 0.85041 1.00951 1.21502 0.93045 0.99374 0.86602 1.48041 1.64515 1.05392 1.14190 1.19059 0.95348 0.89148 0.82774 1.21494 0.98483 1.30530 1.07068 0.92416 1.25507 1.00968 0.95768 0.94590 1.70007 1.38232 1.36461 1.10677 0.85782 0.80795 0.78756 0.77477 1.19054 1.21112 1.19969 1.18192 0.77689 0.82370 0.86904 1.90713 1.50703 1.62522 1.40352 1.20363 0.98677 0.98721 0.98194 1.21274 0.93774 0.97135 0.96502 1.21097 1.01115 0.96350 0.95371 1.18347 0.93206 0.96597 0.96423 1.21237 1.00950 0.95669 0.92991 1.21436 0.94674 0.96979 1.01615 1.18135 0.92748 0.89997 0.92977 1.84778 1.61147 1.31631 1.54296 1.21192 1.01262 0.96006 0.96734 1.18171 0.96165 0.99051 0.94933 1.18476 0.87739 0.92155 0.91494 1.84675 1.14100 1.61217 1.69811 0.89541 0.92780 0.93922 0.90193 0.93650 0.91195 0.87778 0.95977 0.96505 0.92422 0.84321 0.83261 0.82085 0.82254 0.72944 0.84381 0.74083 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.71 11.01 113.37 1.25 1.96 16 2 O -0.40 -14.39 9.27 -136.44 -1.27 -15.65 16 3 C 0.05 1.63 6.28 71.98 0.45 2.08 16 4 C 0.12 4.39 5.86 86.38 0.51 4.89 16 5 N -0.59 -25.61 2.44 -830.13 -2.03 -27.64 16 6 C 0.26 12.11 4.67 85.63 0.40 12.51 16 7 C -0.54 -26.20 6.70 25.60 0.17 -26.03 16 8 H 0.06 2.84 7.64 -2.91 -0.02 2.82 16 9 C 0.03 1.62 5.46 84.65 0.46 2.08 16 10 N -0.92 -48.03 13.29 21.45 0.28 -47.75 16 11 Si 0.95 39.22 29.54 68.60 2.03 41.25 16 12 H -0.27 -10.62 7.11 99.48 0.71 -9.91 16 13 H -0.29 -11.77 7.11 99.48 0.71 -11.06 16 14 H -0.27 -11.27 7.11 99.48 0.71 -10.56 16 15 C 0.56 25.64 6.47 86.63 0.56 26.20 16 16 O -0.56 -28.36 15.26 15.56 0.24 -28.12 16 17 C -0.16 -6.67 4.51 -20.02 -0.09 -6.76 16 18 C -0.07 -2.81 7.73 22.28 0.17 -2.64 16 19 C -0.12 -4.22 9.72 22.30 0.22 -4.00 16 20 C -0.05 -1.45 5.75 -21.24 -0.12 -1.57 16 21 C -0.09 -2.18 9.75 22.32 0.22 -1.96 16 22 C -0.13 -2.74 9.88 22.13 0.22 -2.52 16 23 C 0.11 2.52 6.65 22.26 0.15 2.67 16 24 O -0.51 -9.73 13.47 -92.51 -1.25 -10.98 16 25 C -0.13 -3.79 9.47 22.42 0.21 -3.58 16 26 C -0.08 -2.79 5.75 -21.23 -0.12 -2.91 16 27 C 0.15 5.69 6.71 23.20 0.16 5.84 16 28 O -0.49 -17.55 11.84 -82.13 -0.97 -18.52 16 29 H 0.09 2.07 8.14 -2.39 -0.02 2.05 16 30 H 0.05 1.15 8.14 -2.39 -0.02 1.13 16 31 H 0.04 1.00 8.14 -2.38 -0.02 0.98 16 32 H 0.08 2.05 8.14 -2.39 -0.02 2.03 16 33 H 0.05 1.48 8.14 -2.39 -0.02 1.46 16 34 H 0.07 2.72 7.50 -2.39 -0.02 2.70 16 35 H 0.10 3.60 8.07 -2.39 -0.02 3.58 16 36 H 0.02 1.13 6.26 -2.39 -0.01 1.11 16 37 H 0.02 0.84 8.12 -2.39 -0.02 0.82 16 38 H 0.27 13.38 8.31 -92.71 -0.77 12.61 16 39 H 0.14 6.13 5.42 -2.91 -0.02 6.12 16 40 H 0.15 4.39 8.06 -2.91 -0.02 4.37 16 41 H 0.16 2.89 8.06 -2.91 -0.02 2.86 16 42 H 0.16 2.36 8.06 -2.91 -0.02 2.34 16 43 H 0.41 3.69 9.06 -74.06 -0.67 3.01 16 44 H 0.14 3.68 7.61 -2.91 -0.02 3.66 16 45 H 0.40 11.15 9.06 -74.06 -0.67 10.48 16 Total: -1.00 -70.10 380.71 1.55 -68.54 By element: Atomic # 1 Polarization: 32.88 SS G_CDS: -0.29 Total: 32.59 kcal Atomic # 6 Polarization: 1.47 SS G_CDS: 4.81 Total: 6.28 kcal Atomic # 7 Polarization: -73.64 SS G_CDS: -1.74 Total: -75.39 kcal Atomic # 8 Polarization: -70.03 SS G_CDS: -3.25 Total: -73.27 kcal Atomic # 14 Polarization: 39.22 SS G_CDS: 2.03 Total: 41.25 kcal Total: -70.10 1.55 -68.54 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000896633745.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -66.415 kcal (2) G-P(sol) polarization free energy of solvation -70.097 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -136.512 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.553 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.544 kcal (6) G-S(sol) free energy of system = (1) + (5) -134.959 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.74 seconds