Wall clock time and date at job start Wed Apr 1 2020 03:34:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42901 * 1 3 3 C 1.35653 * 117.00020 * 2 1 4 4 C 1.38708 * 120.15311 * 359.72949 * 3 2 1 5 5 C 1.38049 * 120.08584 * 179.71866 * 4 3 2 6 6 C 1.50696 * 119.80595 * 180.25149 * 5 4 3 7 7 O 1.42899 * 109.47152 * 270.29928 * 6 5 4 8 8 C 1.38549 * 120.38977 * 0.55752 * 5 4 3 9 9 C 1.37796 * 120.30073 * 359.71619 * 8 5 4 10 10 C 1.39701 * 119.90422 * 0.02562 * 9 8 5 11 11 C 1.47544 * 120.19000 * 179.97438 * 10 9 8 12 12 O 1.21589 * 119.99567 * 146.00756 * 11 10 9 13 13 N 1.34773 * 120.00029 * 326.01389 * 11 10 9 14 14 C 1.46504 * 119.99727 * 6.71333 * 13 11 10 15 15 C 1.50695 * 109.46834 * 103.67532 * 14 13 11 16 16 H 1.07997 * 120.00281 * 359.97438 * 15 14 13 17 17 C 1.37878 * 119.99951 * 180.02562 * 15 14 13 18 18 N 1.31513 * 120.00188 * 359.97438 * 17 15 14 19 19 Si 1.86803 * 120.00081 * 179.97438 * 17 15 14 20 20 H 1.48497 * 109.46965 * 359.97438 * 19 17 15 21 21 H 1.48506 * 109.47184 * 119.99269 * 19 17 15 22 22 H 1.48493 * 109.47026 * 239.99337 * 19 17 15 23 23 C 1.46499 * 119.99893 * 186.72217 * 13 11 10 24 24 C 1.50697 * 109.47581 * 85.07455 * 23 13 11 25 25 C 1.34506 * 125.79295 * 89.70890 * 24 23 13 26 26 C 1.41383 * 106.84128 * 179.89164 * 25 24 23 27 27 C 1.34514 * 106.84124 * 0.37390 * 26 25 24 28 28 O 1.34306 * 125.78313 * 270.02516 * 24 23 13 29 29 H 1.08998 * 109.47119 * 179.97438 * 1 2 3 30 30 H 1.09002 * 109.47059 * 59.99481 * 1 2 3 31 31 H 1.09000 * 109.47056 * 300.00306 * 1 2 3 32 32 H 1.07999 * 119.95155 * 359.97438 * 4 3 2 33 33 H 1.08997 * 109.47305 * 30.29749 * 6 5 4 34 34 H 1.09004 * 109.47248 * 150.30380 * 6 5 4 35 35 H 0.96705 * 113.99858 * 180.02562 * 7 6 5 36 36 H 1.07997 * 119.85072 * 179.70224 * 8 5 4 37 37 H 1.07992 * 120.04748 * 179.97438 * 9 8 5 38 38 H 1.09000 * 109.46780 * 223.67107 * 14 13 11 39 39 H 1.08996 * 109.47226 * 343.66809 * 14 13 11 40 40 H 0.96996 * 120.00462 * 179.97438 * 18 17 15 41 41 H 1.09007 * 109.46753 * 205.07371 * 23 13 11 42 42 H 1.08993 * 109.46877 * 325.06686 * 23 13 11 43 43 H 1.08002 * 126.58181 * 0.03191 * 25 24 23 44 44 H 1.08005 * 126.58050 * 180.16964 * 26 25 24 45 45 H 1.07994 * 125.78938 * 179.74992 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0449 1.2087 0.0000 4 6 1.2925 2.3740 -0.0057 5 6 1.9207 3.6033 0.0002 6 6 1.0971 4.8653 -0.0003 7 8 0.8369 5.2638 -1.3477 8 6 3.3038 3.6836 0.0001 9 6 4.0669 2.5362 0.0001 10 6 3.4442 1.2857 -0.0004 11 6 4.2551 0.0530 -0.0010 12 8 3.8598 -0.9349 0.5873 13 7 5.4339 0.0222 -0.6536 14 6 5.9805 1.2500 -1.2368 15 6 7.0961 1.7667 -0.3654 16 1 7.3702 1.2341 0.5333 17 6 7.7661 2.9199 -0.7148 18 7 7.4320 3.5688 -1.8088 19 14 9.1485 3.5608 0.3659 20 1 9.3269 2.6561 1.5298 21 1 10.4078 3.6118 -0.4196 22 1 8.8094 4.9242 0.8466 23 6 6.1685 -1.2389 -0.7797 24 6 5.6545 -2.0026 -1.9729 25 6 6.1209 -1.9037 -3.2306 26 6 5.3573 -2.7926 -4.0217 27 6 4.4644 -3.3754 -3.2015 28 8 4.6491 -2.8930 -1.9618 29 1 -0.3633 -1.0276 -0.0005 30 1 -0.3633 0.5139 -0.8900 31 1 -0.3633 0.5139 0.8900 32 1 0.2139 2.3194 -0.0105 33 1 0.1532 4.6834 0.5135 34 1 1.6439 5.6562 0.5133 35 1 0.3103 6.0713 -1.4243 36 1 3.7862 4.6499 -0.0001 37 1 5.1447 2.6036 -0.0004 38 1 6.3667 1.0379 -2.2338 39 1 5.1941 2.0016 -1.3042 40 1 7.9031 4.3803 -2.0544 41 1 7.2300 -1.0294 -0.9122 42 1 6.0256 -1.8344 0.1219 43 1 6.9258 -1.2690 -3.5706 44 1 5.4673 -2.9675 -5.0818 45 1 3.7244 -4.1067 -3.4910 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000900455418.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:34:20 Heat of formation + Delta-G solvation = -71.650089 kcal Electronic energy + Delta-G solvation = -30990.796458 eV Core-core repulsion = 26748.028330 eV Total energy + Delta-G solvation = -4242.768128 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 345.145 amu Computer time = 0.69 seconds Orbital eigenvalues (eV) -43.47193 -41.75459 -40.13012 -38.87822 -37.33994 -36.87295 -34.75636 -33.90081 -33.26221 -31.53011 -31.11208 -29.25878 -28.43598 -27.89427 -26.32672 -24.94601 -23.27068 -22.89236 -22.60432 -21.69080 -20.68872 -18.82544 -18.58759 -18.38255 -18.11968 -17.95811 -17.77483 -17.06726 -16.79299 -16.42844 -16.39841 -15.98105 -15.89188 -15.51045 -15.33099 -15.05894 -14.64490 -14.34379 -14.12438 -13.99292 -13.80443 -13.70802 -13.56408 -13.35111 -13.17054 -12.99034 -12.74517 -12.69632 -12.54749 -12.24685 -12.17112 -12.06183 -11.72142 -11.49116 -10.95082 -10.89238 -10.78915 -10.60339 -9.82729 -9.68269 -9.40815 -9.20509 -8.20609 -6.36846 -0.13042 0.42901 0.72327 1.43076 1.47212 1.57441 1.64447 1.78934 2.17584 2.32156 2.35966 2.45083 2.74765 3.08522 3.44411 3.68191 3.85294 3.87386 4.03456 4.10483 4.13630 4.15970 4.28271 4.30119 4.36065 4.37404 4.50304 4.55918 4.60415 4.65971 4.69783 4.84267 4.90817 4.98900 5.02019 5.12747 5.18142 5.23982 5.36492 5.53526 5.60654 5.65466 5.73604 5.80480 6.00538 6.24144 6.39234 6.52745 6.77913 6.96525 7.23630 7.36955 8.84603 Molecular weight = 345.15amu Principal moments of inertia in cm(-1) A = 0.006608 B = 0.005763 C = 0.003517 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 4235.978125 B = 4857.471539 C = 7960.532544 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.015 3.985 2 O -0.324 6.324 3 C 0.163 3.837 4 C -0.203 4.203 5 C -0.035 4.035 6 C 0.120 3.880 7 O -0.587 6.587 8 C -0.159 4.159 9 C -0.064 4.064 10 C -0.196 4.196 11 C 0.558 3.442 12 O -0.573 6.573 13 N -0.591 5.591 14 C 0.225 3.775 15 C -0.549 4.549 16 H 0.058 0.942 17 C 0.033 3.967 18 N -0.908 5.908 19 Si 0.956 3.044 20 H -0.271 1.271 21 H -0.278 1.278 22 H -0.275 1.275 23 C 0.198 3.802 24 C -0.045 4.045 25 C -0.205 4.205 26 C -0.222 4.222 27 C -0.045 4.045 28 O -0.191 6.191 29 H 0.114 0.886 30 H 0.068 0.932 31 H 0.074 0.926 32 H 0.164 0.836 33 H 0.085 0.915 34 H 0.075 0.925 35 H 0.402 0.598 36 H 0.136 0.864 37 H 0.169 0.831 38 H 0.010 0.990 39 H 0.063 0.937 40 H 0.271 0.729 41 H 0.121 0.879 42 H 0.081 0.919 43 H 0.149 0.851 44 H 0.175 0.825 45 H 0.239 0.761 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.313 -0.612 -0.239 13.329 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.079 4.079 2 O -0.236 6.236 3 C 0.116 3.884 4 C -0.221 4.221 5 C -0.035 4.035 6 C 0.042 3.958 7 O -0.397 6.397 8 C -0.177 4.177 9 C -0.081 4.081 10 C -0.200 4.200 11 C 0.348 3.652 12 O -0.454 6.454 13 N -0.320 5.320 14 C 0.105 3.895 15 C -0.587 4.587 16 H 0.076 0.924 17 C -0.170 4.170 18 N -0.546 5.546 19 Si 0.781 3.219 20 H -0.196 1.196 21 H -0.204 1.204 22 H -0.200 1.200 23 C 0.075 3.925 24 C -0.096 4.096 25 C -0.225 4.225 26 C -0.241 4.241 27 C -0.112 4.112 28 O -0.087 6.087 29 H 0.132 0.868 30 H 0.087 0.913 31 H 0.092 0.908 32 H 0.182 0.818 33 H 0.103 0.897 34 H 0.093 0.907 35 H 0.252 0.748 36 H 0.154 0.846 37 H 0.186 0.814 38 H 0.028 0.972 39 H 0.081 0.919 40 H 0.080 0.920 41 H 0.139 0.861 42 H 0.099 0.901 43 H 0.167 0.833 44 H 0.193 0.807 45 H 0.256 0.744 Dipole moment (debyes) X Y Z Total from point charges -13.202 -1.769 0.086 13.320 hybrid contribution 0.745 0.905 0.134 1.180 sum -12.456 -0.863 0.220 12.488 Atomic orbital electron populations 1.23429 0.76321 1.05541 1.02653 1.86230 1.23608 1.26318 1.87455 1.19092 0.90411 0.85614 0.93329 1.21219 1.01034 0.90281 1.09613 1.20005 0.93473 0.95146 0.94901 1.21070 0.98316 0.92207 0.84161 1.86548 1.77348 1.49399 1.26409 1.21115 0.93577 0.98525 1.04514 1.22497 1.03602 0.90609 0.91418 1.19409 0.91646 0.94198 1.14714 1.18416 0.80929 0.87555 0.78264 1.90659 1.71930 1.37264 1.45573 1.48113 1.19976 1.10028 1.53933 1.20011 0.94846 0.81575 0.93060 1.21561 1.17822 1.09915 1.09425 0.92353 1.25604 0.98920 0.96337 0.96104 1.70034 1.42007 1.18070 1.24471 0.85538 0.79075 0.78396 0.78910 1.19568 1.20399 1.20001 1.19680 0.96297 0.83195 0.93320 1.23067 0.92147 0.95785 0.98590 1.21882 1.04562 1.03614 0.92487 1.22140 0.99044 1.00754 1.02127 1.24886 1.03055 1.02558 0.80744 1.84095 1.44833 1.46593 1.33225 0.86774 0.91329 0.90774 0.81849 0.89704 0.90731 0.74756 0.84642 0.81437 0.97158 0.91941 0.92020 0.86067 0.90052 0.83330 0.80715 0.74444 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.01 0.34 9.81 113.37 1.11 1.45 16 2 O -0.32 -12.16 9.10 -72.34 -0.66 -12.82 16 3 C 0.16 6.32 6.67 22.84 0.15 6.47 16 4 C -0.20 -6.20 8.67 22.34 0.19 -6.00 16 5 C -0.03 -1.05 5.51 -19.84 -0.11 -1.16 16 6 C 0.12 2.44 7.16 71.23 0.51 2.95 16 7 O -0.59 -12.84 13.64 -148.98 -2.03 -14.88 16 8 C -0.16 -5.79 9.67 22.24 0.22 -5.57 16 9 C -0.06 -2.76 7.42 22.52 0.17 -2.59 16 10 C -0.20 -8.82 5.52 -20.01 -0.11 -8.93 16 11 C 0.56 27.44 7.24 86.70 0.63 28.07 16 12 O -0.57 -30.11 15.52 13.34 0.21 -29.90 16 13 N -0.59 -27.95 2.49 -834.28 -2.07 -30.03 16 14 C 0.22 11.26 4.66 85.63 0.40 11.65 16 15 C -0.55 -28.20 7.54 25.60 0.19 -28.01 16 16 H 0.06 3.04 7.81 -2.91 -0.02 3.02 16 17 C 0.03 1.66 5.45 84.66 0.46 2.12 16 18 N -0.91 -48.37 13.29 21.45 0.28 -48.09 16 19 Si 0.96 40.57 29.54 68.60 2.03 42.60 16 20 H -0.27 -11.47 7.11 99.48 0.71 -10.76 16 21 H -0.28 -11.63 7.11 99.48 0.71 -10.92 16 22 H -0.27 -11.33 7.11 99.48 0.71 -10.62 16 23 C 0.20 8.38 5.89 85.63 0.50 8.89 16 24 C -0.04 -1.80 6.86 24.83 0.17 -1.63 16 25 C -0.21 -7.43 10.81 22.19 0.24 -7.19 16 26 C -0.22 -6.58 10.91 22.19 0.24 -6.34 16 27 C -0.05 -1.33 12.09 66.97 0.81 -0.52 16 28 O -0.19 -7.52 10.65 -2.56 -0.03 -7.55 16 29 H 0.11 2.18 8.14 -2.39 -0.02 2.16 16 30 H 0.07 1.34 7.65 -2.39 -0.02 1.32 16 31 H 0.07 1.38 7.67 -2.39 -0.02 1.36 16 32 H 0.16 3.65 6.30 -2.91 -0.02 3.64 16 33 H 0.08 1.20 8.08 -2.39 -0.02 1.18 16 34 H 0.07 1.29 8.08 -2.38 -0.02 1.27 16 35 H 0.40 4.09 9.12 -74.05 -0.68 3.42 16 36 H 0.14 4.55 8.06 -2.91 -0.02 4.53 16 37 H 0.17 8.16 3.85 -2.91 -0.01 8.15 16 38 H 0.01 0.55 8.14 -2.39 -0.02 0.54 16 39 H 0.06 3.27 3.82 -2.58 -0.01 3.26 16 40 H 0.27 13.58 8.31 -92.71 -0.77 12.81 16 41 H 0.12 4.80 7.94 -2.38 -0.02 4.78 16 42 H 0.08 3.46 7.49 -2.39 -0.02 3.44 16 43 H 0.15 5.23 8.06 -2.91 -0.02 5.20 16 44 H 0.18 3.93 8.06 -2.91 -0.02 3.90 16 45 H 0.24 4.49 8.06 -2.91 -0.02 4.46 16 Total: -1.00 -74.76 382.06 3.87 -70.89 By element: Atomic # 1 Polarization: 35.76 SS G_CDS: 0.37 Total: 36.13 kcal Atomic # 6 Polarization: -12.13 SS G_CDS: 5.78 Total: -6.36 kcal Atomic # 7 Polarization: -76.33 SS G_CDS: -1.79 Total: -78.12 kcal Atomic # 8 Polarization: -62.63 SS G_CDS: -2.51 Total: -65.14 kcal Atomic # 14 Polarization: 40.57 SS G_CDS: 2.03 Total: 42.60 kcal Total: -74.76 3.87 -70.89 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000900455418.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -0.764 kcal (2) G-P(sol) polarization free energy of solvation -74.758 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -75.522 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.872 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.886 kcal (6) G-S(sol) free energy of system = (1) + (5) -71.650 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.69 seconds