Wall clock time and date at job start Wed Apr 1 2020 03:06:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 H 1.08995 * 109.47446 * 2 1 4 4 O 1.45195 * 109.47057 * 120.00366 * 2 1 3 5 5 C 1.34226 * 116.99927 * 269.99438 * 4 2 1 6 6 O 1.20823 * 120.00320 * 0.02562 * 5 4 2 7 7 C 1.50708 * 120.00122 * 180.02562 * 5 4 2 8 8 C 1.50698 * 109.47192 * 180.02562 * 7 5 4 9 9 C 1.33994 * 124.92683 * 89.71863 * 8 7 5 10 10 C 1.46785 * 106.18525 * 179.89981 * 9 8 7 11 11 C 1.39400 * 134.36799 * 180.12354 * 10 9 8 12 12 C 1.36735 * 119.71669 * 180.26527 * 11 10 9 13 13 C 1.38740 * 120.41800 * 359.97438 * 12 11 10 14 14 C 1.37854 * 120.68694 * 0.02562 * 13 12 11 15 15 C 1.38940 * 119.81396 * 359.97438 * 14 13 12 16 16 O 1.34452 * 124.92161 * 270.02207 * 8 7 5 17 17 C 1.50702 * 109.46573 * 240.00234 * 2 1 3 18 18 O 1.21287 * 120.00026 * 248.56697 * 17 2 1 19 19 N 1.34777 * 120.00006 * 68.56890 * 17 2 1 20 20 C 1.46494 * 120.00251 * 4.58150 * 19 17 2 21 21 C 1.46502 * 119.99457 * 184.58146 * 19 17 2 22 22 C 1.50703 * 109.47152 * 90.00340 * 21 19 17 23 23 H 1.07993 * 119.99827 * 359.97438 * 22 21 19 24 24 C 1.37880 * 119.99900 * 179.97438 * 22 21 19 25 25 N 1.31512 * 119.99780 * 359.97438 * 24 22 21 26 26 Si 1.86802 * 119.99712 * 179.97438 * 24 22 21 27 27 H 1.48501 * 109.47107 * 60.00040 * 26 24 22 28 28 H 1.48497 * 109.46643 * 179.97438 * 26 24 22 29 29 H 1.48500 * 109.46825 * 299.99653 * 26 24 22 30 30 H 1.08994 * 109.47320 * 67.14708 * 1 2 3 31 31 H 1.08995 * 109.47043 * 187.15367 * 1 2 3 32 32 H 1.09001 * 109.46492 * 307.15208 * 1 2 3 33 33 H 1.08998 * 109.46798 * 300.00098 * 7 5 4 34 34 H 1.08998 * 109.46748 * 59.99715 * 7 5 4 35 35 H 1.07995 * 126.90484 * 0.02562 * 9 8 7 36 36 H 1.08000 * 120.14490 * 0.27446 * 11 10 9 37 37 H 1.08001 * 119.79506 * 179.97438 * 12 11 10 38 38 H 1.08003 * 119.66281 * 179.97438 * 13 12 11 39 39 H 1.07992 * 120.09477 * 180.02562 * 14 13 12 40 40 H 1.09003 * 109.47023 * 86.11538 * 20 19 17 41 41 H 1.08998 * 109.47309 * 206.11783 * 20 19 17 42 42 H 1.08999 * 109.46890 * 326.12304 * 20 19 17 43 43 H 1.09007 * 109.46486 * 210.00025 * 21 19 17 44 44 H 1.08991 * 109.47700 * 329.99871 * 21 19 17 45 45 H 0.97001 * 119.99582 * 179.97438 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 8 2.0140 -0.6845 1.1855 5 6 2.2172 0.0639 2.2810 6 8 1.9976 1.2516 2.2506 7 6 2.7194 -0.5772 3.5491 8 6 2.8613 0.4728 4.6208 9 6 1.8961 0.8272 5.4801 10 6 2.4731 1.8712 6.3354 11 6 1.9958 2.6318 7.4018 12 6 2.8126 3.5532 7.9962 13 6 4.1120 3.7348 7.5451 14 6 4.6014 2.9920 6.4920 15 6 3.7879 2.0503 5.8739 16 8 3.9728 1.1938 4.8496 17 6 2.0322 -0.7104 -1.2305 18 8 2.5962 -1.7791 -1.1261 19 7 1.8547 -0.1581 -2.4471 20 6 1.2644 1.1773 -2.5663 21 6 2.2522 -0.8935 -3.6503 22 6 1.0931 -1.7247 -4.1368 23 1 0.1545 -1.7074 -3.6029 24 6 1.2310 -2.5074 -5.2635 25 7 2.3739 -2.5281 -5.9139 26 14 -0.2055 -3.5383 -5.8661 27 1 -1.3528 -2.6507 -6.1841 28 1 0.1970 -4.2826 -7.0864 29 1 -0.6026 -4.5007 -4.8072 30 1 -0.3633 0.3991 -0.9469 31 1 -0.3633 -1.0196 0.1280 32 1 -0.3632 0.6207 0.8191 33 1 2.0106 -1.3374 3.8773 34 1 3.6885 -1.0402 3.3630 35 1 0.8957 0.4241 5.5339 36 1 0.9853 2.4937 7.7569 37 1 2.4440 4.1435 8.8222 38 1 4.7465 4.4664 8.0234 39 1 5.6145 3.1409 6.1489 40 1 2.0471 1.9302 -2.4732 41 1 0.7799 1.2750 -3.5378 42 1 0.5270 1.3203 -1.7764 43 1 2.5444 -0.1873 -4.4276 44 1 3.0938 -1.5452 -3.4164 45 1 2.4710 -3.0790 -6.7063 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000920657555.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:06:47 Heat of formation + Delta-G solvation = -78.205145 kcal Electronic energy + Delta-G solvation = -29058.562849 eV Core-core repulsion = 24815.510472 eV Total energy + Delta-G solvation = -4243.052377 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 345.145 amu Computer time = 0.61 seconds Orbital eigenvalues (eV) -42.79056 -40.75156 -39.01084 -38.19792 -36.53637 -34.94399 -33.75845 -32.91028 -32.09859 -31.35806 -30.73028 -28.05042 -27.70899 -26.18051 -24.53437 -23.48993 -22.90312 -22.17215 -21.59391 -20.68059 -18.91522 -18.11512 -17.67697 -17.29797 -16.70442 -16.55586 -16.35051 -16.32064 -15.69299 -15.68812 -14.99207 -14.71084 -14.52981 -14.29137 -14.06392 -13.86734 -13.42899 -13.37998 -13.11877 -12.79571 -12.59326 -12.57976 -12.46365 -12.20295 -12.08905 -12.08413 -11.65329 -11.38444 -11.26079 -11.23243 -10.93210 -10.78707 -10.71880 -10.57427 -10.40994 -10.19685 -9.69802 -8.96147 -8.93212 -8.49118 -8.47223 -7.75091 -6.08298 -4.13816 0.53636 1.04898 1.81327 2.01951 2.27386 2.65643 3.20261 3.29512 3.34232 3.37553 3.40323 3.84734 3.89938 4.32586 4.40292 4.54509 4.58531 4.68711 4.75830 4.78024 4.83499 4.91712 4.97723 5.06339 5.07586 5.11956 5.26158 5.36070 5.42711 5.52600 5.63185 5.70162 5.84521 5.86177 5.92490 6.03711 6.09123 6.10443 6.24561 6.32404 6.33805 6.86712 6.95869 7.37190 7.43340 7.58673 7.87282 8.17002 8.26088 8.80577 8.95604 9.51223 10.99756 Molecular weight = 345.15amu Principal moments of inertia in cm(-1) A = 0.030168 B = 0.001858 C = 0.001847 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 927.924788 B =15069.383893 C =15156.388933 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.171 4.171 2 C 0.072 3.928 3 H 0.104 0.896 4 O -0.322 6.322 5 C 0.462 3.538 6 O -0.500 6.500 7 C -0.039 4.039 8 C 0.047 3.953 9 C -0.184 4.184 10 C -0.130 4.130 11 C -0.070 4.070 12 C -0.138 4.138 13 C -0.094 4.094 14 C -0.107 4.107 15 C 0.059 3.941 16 O -0.187 6.187 17 C 0.509 3.491 18 O -0.520 6.520 19 N -0.595 5.595 20 C 0.067 3.933 21 C 0.246 3.754 22 C -0.531 4.531 23 H 0.058 0.942 24 C 0.062 3.938 25 N -0.893 5.893 26 Si 0.900 3.100 27 H -0.277 1.277 28 H -0.286 1.286 29 H -0.276 1.276 30 H 0.093 0.907 31 H 0.076 0.924 32 H 0.069 0.931 33 H 0.143 0.857 34 H 0.132 0.868 35 H 0.160 0.840 36 H 0.127 0.873 37 H 0.129 0.871 38 H 0.135 0.865 39 H 0.133 0.867 40 H 0.047 0.953 41 H 0.080 0.920 42 H 0.065 0.935 43 H 0.036 0.964 44 H 0.046 0.954 45 H 0.265 0.735 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.757 11.705 26.374 28.865 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.228 4.228 2 C 0.013 3.987 3 H 0.122 0.878 4 O -0.237 6.237 5 C 0.303 3.697 6 O -0.387 6.387 7 C -0.076 4.076 8 C 0.000 4.000 9 C -0.203 4.203 10 C -0.131 4.131 11 C -0.088 4.088 12 C -0.156 4.156 13 C -0.112 4.112 14 C -0.125 4.125 15 C 0.012 3.988 16 O -0.088 6.088 17 C 0.293 3.707 18 O -0.396 6.396 19 N -0.329 5.329 20 C -0.077 4.077 21 C 0.127 3.873 22 C -0.569 4.569 23 H 0.076 0.924 24 C -0.141 4.141 25 N -0.532 5.532 26 Si 0.727 3.273 27 H -0.202 1.202 28 H -0.211 1.211 29 H -0.201 1.201 30 H 0.111 0.889 31 H 0.095 0.905 32 H 0.088 0.912 33 H 0.161 0.839 34 H 0.150 0.850 35 H 0.178 0.822 36 H 0.145 0.855 37 H 0.147 0.853 38 H 0.153 0.847 39 H 0.150 0.850 40 H 0.066 0.934 41 H 0.099 0.901 42 H 0.083 0.917 43 H 0.054 0.946 44 H 0.064 0.936 45 H 0.074 0.926 Dipole moment (debyes) X Y Z Total from point charges -0.179 11.378 26.029 28.407 hybrid contribution -0.979 -0.357 -0.516 1.163 sum -1.158 11.020 25.513 27.815 Atomic orbital electron populations 1.22305 0.92115 1.04229 1.04139 1.22677 0.96007 0.97433 0.82565 0.87835 1.86606 1.76415 1.41220 1.19431 1.23303 0.74856 0.85975 0.85517 1.90700 1.47512 1.16375 1.84150 1.19771 1.06601 0.94787 0.86476 1.21309 0.85156 0.95677 0.97906 1.22225 1.00141 1.00032 0.97942 1.19922 0.94199 0.99769 0.99164 1.20300 0.99931 0.94616 0.93921 1.20782 0.94214 0.99456 1.01181 1.20939 0.95974 0.98732 0.95602 1.19982 0.99766 0.95549 0.97228 1.19614 0.95446 0.94106 0.89678 1.83937 1.36665 1.43508 1.44707 1.19748 0.80938 0.86152 0.83815 1.90702 1.41684 1.21465 1.85760 1.48063 1.60729 1.17250 1.06841 1.21982 0.97894 0.84185 1.03624 1.19369 0.96805 0.91644 0.79449 1.21380 0.98401 1.26490 1.10657 0.92391 1.24942 0.96114 0.96592 0.96421 1.69922 1.24114 1.40175 1.18967 0.86537 0.82261 0.80373 0.78125 1.20228 1.21139 1.20129 0.88889 0.90543 0.91244 0.83921 0.85039 0.82215 0.85463 0.85325 0.84747 0.84954 0.93404 0.90081 0.91681 0.94622 0.93568 0.92575 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -2.34 9.14 37.16 0.34 -2.00 16 2 C 0.07 1.18 2.16 -27.88 -0.06 1.12 16 3 H 0.10 1.59 6.73 -51.93 -0.35 1.24 16 4 O -0.32 -5.12 9.43 -45.85 -0.43 -5.56 16 5 C 0.46 6.25 7.92 36.01 0.29 6.54 16 6 O -0.50 -7.92 15.25 -18.75 -0.29 -8.20 16 7 C -0.04 -0.37 6.32 -29.03 -0.18 -0.55 16 8 C 0.05 0.53 5.73 -35.80 -0.20 0.32 16 9 C -0.18 -1.91 11.01 -37.62 -0.41 -2.32 16 10 C -0.13 -1.42 6.40 -105.16 -0.67 -2.09 16 11 C -0.07 -0.60 10.05 -39.69 -0.40 -1.00 16 12 C -0.14 -1.00 9.98 -39.94 -0.40 -1.40 16 13 C -0.09 -0.69 10.01 -39.54 -0.40 -1.08 16 14 C -0.11 -0.99 10.07 -39.46 -0.40 -1.38 16 15 C 0.06 0.69 7.42 -38.47 -0.29 0.41 16 16 O -0.19 -2.39 10.58 3.92 0.04 -2.35 16 17 C 0.51 10.83 7.03 -10.98 -0.08 10.75 16 18 O -0.52 -13.34 16.08 -13.95 -0.22 -13.57 16 19 N -0.60 -12.58 2.86 -182.95 -0.52 -13.10 16 20 C 0.07 1.05 9.80 59.84 0.59 1.63 16 21 C 0.25 6.38 5.18 -5.19 -0.03 6.35 16 22 C -0.53 -14.78 9.39 -34.44 -0.32 -15.11 16 23 H 0.06 1.59 7.81 -52.49 -0.41 1.18 16 24 C 0.06 1.74 5.46 -17.82 -0.10 1.64 16 25 N -0.89 -26.27 13.29 55.43 0.74 -25.54 16 26 Si 0.90 21.54 29.54 -169.99 -5.02 16.52 16 27 H -0.28 -6.41 7.11 56.52 0.40 -6.01 16 28 H -0.29 -6.75 7.11 56.52 0.40 -6.35 16 29 H -0.28 -6.62 7.11 56.52 0.40 -6.22 16 30 H 0.09 1.22 5.46 -51.93 -0.28 0.93 16 31 H 0.08 1.08 8.14 -51.93 -0.42 0.66 16 32 H 0.07 0.82 8.14 -51.93 -0.42 0.40 16 33 H 0.14 0.85 8.14 -51.93 -0.42 0.43 16 34 H 0.13 1.04 8.14 -51.93 -0.42 0.61 16 35 H 0.16 1.23 8.06 -52.49 -0.42 0.81 16 36 H 0.13 0.81 8.06 -52.49 -0.42 0.39 16 37 H 0.13 0.59 8.06 -52.49 -0.42 0.17 16 38 H 0.13 0.59 8.06 -52.48 -0.42 0.17 16 39 H 0.13 0.98 8.06 -52.49 -0.42 0.55 16 40 H 0.05 0.66 8.14 -51.93 -0.42 0.24 16 41 H 0.08 1.27 8.04 -51.93 -0.42 0.86 16 42 H 0.06 0.85 4.31 -51.93 -0.22 0.62 16 43 H 0.04 0.93 8.07 -51.93 -0.42 0.51 16 44 H 0.05 1.35 7.36 -51.93 -0.38 0.97 16 45 H 0.26 7.36 8.31 -40.82 -0.34 7.02 16 LS Contribution 388.49 15.07 5.85 5.85 Total: -1.00 -36.51 388.49 -8.43 -44.94 By element: Atomic # 1 Polarization: 5.03 SS G_CDS: -5.85 Total: -0.82 kcal Atomic # 6 Polarization: 4.55 SS G_CDS: -2.72 Total: 1.83 kcal Atomic # 7 Polarization: -38.85 SS G_CDS: 0.21 Total: -38.64 kcal Atomic # 8 Polarization: -28.78 SS G_CDS: -0.90 Total: -29.68 kcal Atomic # 14 Polarization: 21.54 SS G_CDS: -5.02 Total: 16.52 kcal Total LS contribution 5.85 Total: 5.85 kcal Total: -36.51 -8.43 -44.94 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000920657555.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -33.270 kcal (2) G-P(sol) polarization free energy of solvation -36.508 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -69.777 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.428 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.936 kcal (6) G-S(sol) free energy of system = (1) + (5) -78.205 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.61 seconds