Wall clock time and date at job start Wed Apr 1 2020 03:06:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 H 1.08995 * 109.47446 * 2 1 4 4 O 1.45195 * 109.47057 * 120.00366 * 2 1 3 5 5 C 1.34226 * 116.99927 * 269.99438 * 4 2 1 6 6 O 1.20823 * 120.00320 * 0.02562 * 5 4 2 7 7 C 1.50708 * 120.00122 * 180.02562 * 5 4 2 8 8 C 1.50698 * 109.47192 * 180.02562 * 7 5 4 9 9 C 1.33994 * 124.92683 * 89.71863 * 8 7 5 10 10 C 1.46785 * 106.18525 * 179.89981 * 9 8 7 11 11 C 1.39400 * 134.36799 * 180.12354 * 10 9 8 12 12 C 1.36735 * 119.71669 * 180.26527 * 11 10 9 13 13 C 1.38740 * 120.41800 * 359.97438 * 12 11 10 14 14 C 1.37854 * 120.68694 * 0.02562 * 13 12 11 15 15 C 1.38940 * 119.81396 * 359.97438 * 14 13 12 16 16 O 1.34452 * 124.92161 * 270.02207 * 8 7 5 17 17 C 1.50702 * 109.46573 * 240.00234 * 2 1 3 18 18 O 1.21287 * 120.00026 * 248.56697 * 17 2 1 19 19 N 1.34777 * 120.00006 * 68.56890 * 17 2 1 20 20 C 1.46494 * 120.00251 * 4.58150 * 19 17 2 21 21 C 1.46502 * 119.99457 * 184.58146 * 19 17 2 22 22 C 1.50703 * 109.47152 * 90.00340 * 21 19 17 23 23 H 1.07993 * 119.99827 * 359.97438 * 22 21 19 24 24 C 1.37880 * 119.99900 * 179.97438 * 22 21 19 25 25 N 1.31512 * 119.99780 * 359.97438 * 24 22 21 26 26 Si 1.86802 * 119.99712 * 179.97438 * 24 22 21 27 27 H 1.48501 * 109.47107 * 60.00040 * 26 24 22 28 28 H 1.48497 * 109.46643 * 179.97438 * 26 24 22 29 29 H 1.48500 * 109.46825 * 299.99653 * 26 24 22 30 30 H 1.08994 * 109.47320 * 67.14708 * 1 2 3 31 31 H 1.08995 * 109.47043 * 187.15367 * 1 2 3 32 32 H 1.09001 * 109.46492 * 307.15208 * 1 2 3 33 33 H 1.08998 * 109.46798 * 300.00098 * 7 5 4 34 34 H 1.08998 * 109.46748 * 59.99715 * 7 5 4 35 35 H 1.07995 * 126.90484 * 0.02562 * 9 8 7 36 36 H 1.08000 * 120.14490 * 0.27446 * 11 10 9 37 37 H 1.08001 * 119.79506 * 179.97438 * 12 11 10 38 38 H 1.08003 * 119.66281 * 179.97438 * 13 12 11 39 39 H 1.07992 * 120.09477 * 180.02562 * 14 13 12 40 40 H 1.09003 * 109.47023 * 86.11538 * 20 19 17 41 41 H 1.08998 * 109.47309 * 206.11783 * 20 19 17 42 42 H 1.08999 * 109.46890 * 326.12304 * 20 19 17 43 43 H 1.09007 * 109.46486 * 210.00025 * 21 19 17 44 44 H 1.08991 * 109.47700 * 329.99871 * 21 19 17 45 45 H 0.97001 * 119.99582 * 179.97438 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 8 2.0140 -0.6845 1.1855 5 6 2.2172 0.0639 2.2810 6 8 1.9976 1.2516 2.2506 7 6 2.7194 -0.5772 3.5491 8 6 2.8613 0.4728 4.6208 9 6 1.8961 0.8272 5.4801 10 6 2.4731 1.8712 6.3354 11 6 1.9958 2.6318 7.4018 12 6 2.8126 3.5532 7.9962 13 6 4.1120 3.7348 7.5451 14 6 4.6014 2.9920 6.4920 15 6 3.7879 2.0503 5.8739 16 8 3.9728 1.1938 4.8496 17 6 2.0322 -0.7104 -1.2305 18 8 2.5962 -1.7791 -1.1261 19 7 1.8547 -0.1581 -2.4471 20 6 1.2644 1.1773 -2.5663 21 6 2.2522 -0.8935 -3.6503 22 6 1.0931 -1.7247 -4.1368 23 1 0.1545 -1.7074 -3.6029 24 6 1.2310 -2.5074 -5.2635 25 7 2.3739 -2.5281 -5.9139 26 14 -0.2055 -3.5383 -5.8661 27 1 -1.3528 -2.6507 -6.1841 28 1 0.1970 -4.2826 -7.0864 29 1 -0.6026 -4.5007 -4.8072 30 1 -0.3633 0.3991 -0.9469 31 1 -0.3633 -1.0196 0.1280 32 1 -0.3632 0.6207 0.8191 33 1 2.0106 -1.3374 3.8773 34 1 3.6885 -1.0402 3.3630 35 1 0.8957 0.4241 5.5339 36 1 0.9853 2.4937 7.7569 37 1 2.4440 4.1435 8.8222 38 1 4.7465 4.4664 8.0234 39 1 5.6145 3.1409 6.1489 40 1 2.0471 1.9302 -2.4732 41 1 0.7799 1.2750 -3.5378 42 1 0.5270 1.3203 -1.7764 43 1 2.5444 -0.1873 -4.4276 44 1 3.0938 -1.5452 -3.4164 45 1 2.4710 -3.0790 -6.7063 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000920657555.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:06:46 Heat of formation + Delta-G solvation = -99.422101 kcal Electronic energy + Delta-G solvation = -29059.482885 eV Core-core repulsion = 24815.510472 eV Total energy + Delta-G solvation = -4243.972413 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 345.145 amu Computer time = 0.68 seconds Orbital eigenvalues (eV) -43.53406 -41.96282 -40.57366 -38.85282 -37.76495 -36.72233 -34.91009 -34.52115 -33.24205 -32.37123 -31.37041 -29.67307 -28.72269 -27.67043 -26.02319 -24.75508 -23.95203 -23.07899 -22.47448 -21.63633 -20.47673 -19.21719 -18.69353 -18.38066 -18.33866 -17.69166 -17.55008 -17.41245 -17.08857 -16.62222 -16.36970 -16.26437 -15.85805 -15.22683 -14.99828 -14.73695 -14.67625 -14.38950 -14.15652 -14.07857 -13.85892 -13.68080 -13.61977 -13.35509 -13.24054 -13.22828 -13.06820 -12.86430 -12.68955 -12.60623 -12.39878 -12.18977 -11.98453 -11.87563 -11.83539 -11.71969 -11.13631 -10.65265 -10.64188 -9.61925 -9.53813 -9.18317 -8.23080 -6.38139 -0.14602 0.38164 0.92184 1.00450 1.38167 1.42548 1.47853 1.49980 1.57783 1.72038 2.32548 2.44300 2.76225 3.07056 3.17878 3.35859 3.52154 3.68462 3.76595 3.80871 3.98601 4.05460 4.11305 4.18365 4.21647 4.34707 4.43788 4.52841 4.55899 4.57341 4.63166 4.72168 4.83617 4.91087 4.93178 5.11539 5.16836 5.19711 5.26036 5.33046 5.44638 5.50176 5.50476 5.72896 5.77060 6.02495 6.15533 6.45399 6.59640 6.70452 7.17882 7.34978 8.84305 Molecular weight = 345.15amu Principal moments of inertia in cm(-1) A = 0.030168 B = 0.001858 C = 0.001847 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 927.924788 B =15069.383893 C =15156.388933 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.164 4.164 2 C 0.081 3.919 3 H 0.117 0.883 4 O -0.337 6.337 5 C 0.464 3.536 6 O -0.524 6.524 7 C -0.031 4.031 8 C 0.024 3.976 9 C -0.182 4.182 10 C -0.156 4.156 11 C -0.078 4.078 12 C -0.136 4.136 13 C -0.087 4.087 14 C -0.126 4.126 15 C 0.025 3.975 16 O -0.212 6.212 17 C 0.500 3.500 18 O -0.577 6.577 19 N -0.600 5.600 20 C 0.061 3.939 21 C 0.259 3.741 22 C -0.545 4.545 23 H 0.059 0.941 24 C 0.007 3.993 25 N -0.928 5.928 26 Si 0.970 3.030 27 H -0.259 1.259 28 H -0.280 1.280 29 H -0.276 1.276 30 H 0.101 0.899 31 H 0.069 0.931 32 H 0.094 0.906 33 H 0.181 0.819 34 H 0.144 0.856 35 H 0.183 0.817 36 H 0.148 0.852 37 H 0.161 0.839 38 H 0.167 0.833 39 H 0.142 0.858 40 H 0.070 0.930 41 H 0.080 0.920 42 H 0.097 0.903 43 H 0.029 0.971 44 H 0.000 1.000 45 H 0.267 0.733 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.955 13.048 28.471 31.458 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.220 4.220 2 C 0.023 3.977 3 H 0.135 0.865 4 O -0.253 6.253 5 C 0.308 3.692 6 O -0.413 6.413 7 C -0.068 4.068 8 C -0.023 4.023 9 C -0.201 4.201 10 C -0.156 4.156 11 C -0.096 4.096 12 C -0.154 4.154 13 C -0.105 4.105 14 C -0.145 4.145 15 C -0.022 4.022 16 O -0.115 6.115 17 C 0.287 3.713 18 O -0.457 6.457 19 N -0.332 5.332 20 C -0.081 4.081 21 C 0.138 3.862 22 C -0.583 4.583 23 H 0.078 0.922 24 C -0.192 4.192 25 N -0.567 5.567 26 Si 0.794 3.206 27 H -0.183 1.183 28 H -0.206 1.206 29 H -0.202 1.202 30 H 0.119 0.881 31 H 0.088 0.912 32 H 0.113 0.887 33 H 0.198 0.802 34 H 0.162 0.838 35 H 0.201 0.799 36 H 0.166 0.834 37 H 0.179 0.821 38 H 0.184 0.816 39 H 0.159 0.841 40 H 0.089 0.911 41 H 0.099 0.901 42 H 0.116 0.884 43 H 0.047 0.953 44 H 0.018 0.982 45 H 0.076 0.924 Dipole moment (debyes) X Y Z Total from point charges -2.399 12.776 28.143 31.000 hybrid contribution -0.217 -0.657 -1.054 1.261 sum -2.616 12.118 27.089 29.791 Atomic orbital electron populations 1.22299 0.89650 1.04526 1.05564 1.22518 0.97576 0.96800 0.80799 0.86520 1.86619 1.76831 1.41994 1.19826 1.24056 0.73839 0.85708 0.85641 1.90681 1.48735 1.17448 1.84445 1.19963 1.08028 0.94744 0.84040 1.21620 0.85245 0.96554 0.98923 1.22607 1.00807 0.99431 0.97243 1.20289 0.94239 1.00772 1.00349 1.20672 1.01215 0.94435 0.93295 1.21237 0.93914 0.98851 1.01414 1.21400 0.96509 0.98203 0.94402 1.20349 1.00335 0.95737 0.98060 1.20144 0.96739 0.95032 0.90238 1.83885 1.37767 1.44288 1.45565 1.20642 0.79818 0.85703 0.85143 1.90662 1.44126 1.24130 1.86755 1.48046 1.60645 1.18825 1.05675 1.22294 0.99253 0.81623 1.04920 1.18868 0.95070 0.91175 0.81111 1.21667 0.98755 1.27017 1.10900 0.92239 1.25891 0.98965 0.97772 0.96594 1.70051 1.26227 1.41028 1.19443 0.85434 0.79094 0.78644 0.77450 1.18321 1.20556 1.20152 0.88112 0.91164 0.88713 0.80222 0.83810 0.79931 0.83393 0.82150 0.81591 0.84065 0.91146 0.90111 0.88450 0.95292 0.98183 0.92372 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -4.14 9.14 71.98 0.66 -3.48 16 2 C 0.08 2.60 2.16 29.85 0.06 2.67 16 3 H 0.12 3.43 6.73 -2.39 -0.02 3.41 16 4 O -0.34 -10.59 9.43 -45.07 -0.42 -11.01 16 5 C 0.46 12.18 7.92 71.24 0.56 12.75 16 6 O -0.52 -16.17 15.25 21.97 0.34 -15.84 16 7 C -0.03 -0.56 6.32 29.10 0.18 -0.37 16 8 C 0.02 0.52 5.73 24.72 0.14 0.66 16 9 C -0.18 -3.60 11.01 23.54 0.26 -3.34 16 10 C -0.16 -3.31 6.40 -20.21 -0.13 -3.43 16 11 C -0.08 -1.20 10.05 22.20 0.22 -0.98 16 12 C -0.14 -1.60 9.98 22.04 0.22 -1.38 16 13 C -0.09 -1.08 10.01 22.30 0.22 -0.86 16 14 C -0.13 -2.28 10.07 22.35 0.23 -2.05 16 15 C 0.03 0.60 7.42 22.99 0.17 0.77 16 16 O -0.21 -5.61 10.58 -8.90 -0.09 -5.71 16 17 C 0.50 21.67 7.03 87.66 0.62 22.29 16 18 O -0.58 -30.94 16.08 15.59 0.25 -30.69 16 19 N -0.60 -25.69 2.86 -851.13 -2.43 -28.12 16 20 C 0.06 1.82 9.80 127.77 1.25 3.07 16 21 C 0.26 13.95 5.18 85.63 0.44 14.39 16 22 C -0.54 -30.91 9.39 25.60 0.24 -30.67 16 23 H 0.06 3.28 7.81 -2.91 -0.02 3.25 16 24 C 0.01 0.40 5.46 84.66 0.46 0.86 16 25 N -0.93 -55.85 13.29 21.45 0.28 -55.56 16 26 Si 0.97 44.20 29.54 68.60 2.03 46.22 16 27 H -0.26 -10.99 7.11 99.48 0.71 -10.29 16 28 H -0.28 -12.43 7.11 99.48 0.71 -11.73 16 29 H -0.28 -12.52 7.11 99.48 0.71 -11.82 16 30 H 0.10 2.37 5.46 -2.39 -0.01 2.35 16 31 H 0.07 1.88 8.14 -2.39 -0.02 1.86 16 32 H 0.09 1.95 8.14 -2.39 -0.02 1.93 16 33 H 0.18 1.74 8.14 -2.39 -0.02 1.72 16 34 H 0.14 2.19 8.14 -2.39 -0.02 2.17 16 35 H 0.18 2.47 8.06 -2.91 -0.02 2.44 16 36 H 0.15 1.52 8.06 -2.91 -0.02 1.49 16 37 H 0.16 0.82 8.06 -2.91 -0.02 0.79 16 38 H 0.17 0.91 8.06 -2.91 -0.02 0.88 16 39 H 0.14 2.09 8.06 -2.91 -0.02 2.06 16 40 H 0.07 1.81 8.14 -2.39 -0.02 1.79 16 41 H 0.08 2.44 8.04 -2.39 -0.02 2.42 16 42 H 0.10 2.28 4.31 -2.39 -0.01 2.27 16 43 H 0.03 1.58 8.07 -2.38 -0.02 1.56 16 44 H 0.00 0.00 7.36 -2.39 -0.02 -0.02 16 45 H 0.27 15.13 8.31 -92.71 -0.77 14.35 16 Total: -1.00 -83.67 388.49 6.78 -76.89 By element: Atomic # 1 Polarization: 11.92 SS G_CDS: 1.02 Total: 12.94 kcal Atomic # 6 Polarization: 5.07 SS G_CDS: 5.82 Total: 10.89 kcal Atomic # 7 Polarization: -81.54 SS G_CDS: -2.15 Total: -83.69 kcal Atomic # 8 Polarization: -63.31 SS G_CDS: 0.07 Total: -63.25 kcal Atomic # 14 Polarization: 44.20 SS G_CDS: 2.03 Total: 46.22 kcal Total: -83.67 6.78 -76.89 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000920657555.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -22.534 kcal (2) G-P(sol) polarization free energy of solvation -83.671 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -106.204 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.782 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -76.888 kcal (6) G-S(sol) free energy of system = (1) + (5) -99.422 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.68 seconds