Wall clock time and date at job start Wed Apr 1 2020 03:20:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 C 1.52997 * 109.47156 * 2 1 4 4 C 1.53002 * 109.46737 * 239.99693 * 2 1 3 5 5 O 1.45194 * 109.47103 * 120.00117 * 2 1 3 6 6 C 1.34639 * 117.00589 * 59.99473 * 5 2 1 7 7 O 1.21515 * 119.99318 * 0.02562 * 6 5 2 8 8 N 1.34770 * 120.00430 * 179.97438 * 6 5 2 9 9 C 1.46503 * 120.00216 * 180.02562 * 8 6 5 10 10 H 1.08997 * 112.84497 * 23.80942 * 9 8 6 11 11 C 1.53782 * 113.61392 * 155.00199 * 9 8 6 12 12 C 1.53779 * 87.08157 * 89.11846 * 11 9 8 13 13 H 1.09003 * 113.61329 * 270.80217 * 12 11 9 14 14 C 1.52998 * 113.61452 * 139.97845 * 12 11 9 15 15 O 1.45207 * 109.46757 * 175.00012 * 14 12 11 16 16 C 1.34227 * 116.99435 * 180.02562 * 15 14 12 17 17 O 1.20826 * 120.00314 * 359.97438 * 16 15 14 18 18 C 1.50703 * 119.99724 * 180.02562 * 16 15 14 19 19 S 1.81000 * 109.47038 * 179.97438 * 18 16 15 20 20 C 1.76209 * 99.99875 * 179.97438 * 19 18 16 21 21 H 1.07999 * 119.99972 * 359.97438 * 20 19 18 22 22 C 1.38798 * 119.99599 * 180.02562 * 20 19 18 23 23 N 1.31634 * 119.99397 * 180.02562 * 22 20 19 24 24 Si 1.86798 * 120.00627 * 359.97438 * 22 20 19 25 25 H 1.48493 * 109.47326 * 270.00578 * 24 22 20 26 26 H 1.48506 * 109.46545 * 30.00328 * 24 22 20 27 27 H 1.48498 * 109.47210 * 150.00039 * 24 22 20 28 28 C 1.53773 * 113.61500 * 252.50045 * 9 8 6 29 29 H 1.09004 * 109.46795 * 300.00012 * 1 2 3 30 30 H 1.08994 * 109.47183 * 60.00074 * 1 2 3 31 31 H 1.08997 * 109.47302 * 180.02562 * 1 2 3 32 32 H 1.09000 * 109.47355 * 180.02562 * 3 2 1 33 33 H 1.09007 * 109.46942 * 300.00259 * 3 2 1 34 34 H 1.09002 * 109.47028 * 59.99802 * 3 2 1 35 35 H 1.08997 * 109.47044 * 299.99938 * 4 2 1 36 36 H 1.09002 * 109.46954 * 60.00469 * 4 2 1 37 37 H 1.09000 * 109.46957 * 179.97438 * 4 2 1 38 38 H 0.97002 * 120.00028 * 0.02562 * 8 6 5 39 39 H 1.09001 * 113.61633 * 334.56643 * 11 9 8 40 40 H 1.09000 * 113.61375 * 203.66669 * 11 9 8 41 41 H 1.09000 * 109.46945 * 55.00184 * 14 12 11 42 42 H 1.08990 * 109.47435 * 294.99833 * 14 12 11 43 43 H 1.09000 * 109.47235 * 59.99344 * 18 16 15 44 44 H 1.09005 * 109.46867 * 299.99384 * 18 16 15 45 45 H 0.97005 * 119.99723 * 179.97438 * 23 22 20 46 46 H 1.08997 * 113.61563 * 156.33367 * 28 9 8 47 47 H 1.08997 * 113.61794 * 25.43256 * 28 9 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0400 -0.7213 -1.2492 5 8 2.0140 -0.6845 1.1855 6 6 1.6522 -1.9723 1.3384 7 8 0.9515 -2.5096 0.5036 8 7 2.0680 -2.6657 2.4167 9 6 1.6748 -4.0671 2.5827 10 1 1.4225 -4.5505 1.6390 11 6 2.6485 -4.8814 3.4509 12 6 1.8079 -4.4465 4.6630 13 1 2.1377 -3.5082 5.1090 14 6 1.6027 -5.5559 5.6964 15 8 0.9034 -5.0192 6.8502 16 6 0.6439 -5.8700 7.8554 17 8 0.9892 -7.0250 7.7738 18 6 -0.0792 -5.3849 9.0855 19 16 -0.2775 -6.7569 10.2492 20 6 -1.1263 -5.9311 11.5540 21 1 -1.3613 -4.8807 11.4656 22 6 -1.4917 -6.6304 12.6960 23 7 -2.1262 -6.0135 13.6705 24 14 -1.0845 -8.4470 12.8493 25 1 -2.2031 -9.2532 12.2983 26 1 0.1581 -8.7413 12.0913 27 1 -0.8846 -8.7904 14.2801 28 6 0.6290 -4.2866 3.6885 29 1 -0.3633 0.5139 0.8900 30 1 -0.3633 0.5138 -0.8899 31 1 -0.3634 -1.0276 0.0005 32 1 3.1300 1.4425 -0.0005 33 1 1.6766 1.9563 -0.8900 34 1 1.6767 1.9563 0.8900 35 1 1.6766 -1.7490 -1.2492 36 1 1.6766 -0.2075 -2.1392 37 1 3.1300 -0.7210 -1.2495 38 1 2.6277 -2.2368 3.0828 39 1 3.6636 -4.4843 3.4584 40 1 2.6138 -5.9536 3.2576 41 1 2.5717 -5.9460 6.0078 42 1 1.0125 -6.3589 5.2550 43 1 -1.0605 -5.0034 8.8033 44 1 0.4983 -4.5893 9.5563 45 1 -2.3819 -6.5023 14.4684 46 1 0.0421 -5.1961 3.5602 47 1 0.0136 -3.4093 3.8879 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001123352307.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:20:45 Heat of formation + Delta-G solvation = -155.556028 kcal Electronic energy + Delta-G solvation = -27077.566048 eV Core-core repulsion = 22966.603436 eV Total energy + Delta-G solvation = -4110.962611 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 345.149 amu Computer time = 0.68 seconds Orbital eigenvalues (eV) -41.27694 -40.33285 -39.51935 -37.26438 -36.13863 -34.68853 -33.43933 -32.50225 -30.27360 -28.31710 -27.83202 -27.78005 -26.16154 -25.69094 -23.93815 -22.47587 -21.13023 -20.50224 -19.64147 -18.64589 -17.93815 -17.29177 -16.97272 -16.59509 -16.43264 -16.09778 -15.83518 -15.13413 -15.02575 -14.83272 -14.60642 -14.32743 -14.11524 -13.90364 -13.61657 -13.10148 -12.92614 -12.90861 -12.81501 -12.59915 -12.37864 -12.33323 -12.31546 -12.12732 -11.85775 -11.72465 -11.41351 -11.28674 -11.09050 -11.06160 -10.92690 -10.76520 -10.71745 -10.40961 -10.37675 -10.14293 -9.88791 -9.53671 -9.06553 -8.62835 -7.03527 -6.34538 -4.08913 1.74493 2.40362 2.46059 2.52714 3.08462 3.28478 3.44415 3.50450 3.69174 3.99922 4.12577 4.26955 4.28807 4.33184 4.40104 4.41809 4.47816 4.71674 4.94929 5.04243 5.04400 5.05984 5.11917 5.12438 5.15461 5.26161 5.27139 5.31325 5.33718 5.36975 5.44052 5.45504 5.57169 5.63621 5.66710 5.68706 5.73910 5.87428 5.93479 5.94831 6.10096 6.19605 6.57804 7.01881 7.88277 8.01136 8.03693 8.36964 9.10546 10.74473 Molecular weight = 345.15amu Principal moments of inertia in cm(-1) A = 0.025969 B = 0.001559 C = 0.001502 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1077.938654 B =17957.643703 C =18641.219282 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.184 4.184 2 C 0.136 3.864 3 C -0.141 4.141 4 C -0.184 4.184 5 O -0.365 6.365 6 C 0.653 3.347 7 O -0.566 6.566 8 N -0.693 5.693 9 C 0.137 3.863 10 H 0.110 0.890 11 C -0.135 4.135 12 C -0.111 4.111 13 H 0.103 0.897 14 C 0.075 3.925 15 O -0.357 6.357 16 C 0.478 3.522 17 O -0.491 6.491 18 C -0.100 4.100 19 S -0.141 6.141 20 C -0.523 4.523 21 H 0.091 0.909 22 C 0.097 3.903 23 N -0.877 5.877 24 Si 0.856 3.144 25 H -0.266 1.266 26 H -0.236 1.236 27 H -0.273 1.273 28 C -0.146 4.146 29 H 0.060 0.940 30 H 0.070 0.930 31 H 0.088 0.912 32 H 0.066 0.934 33 H 0.081 0.919 34 H 0.067 0.933 35 H 0.088 0.912 36 H 0.070 0.930 37 H 0.059 0.941 38 H 0.407 0.593 39 H 0.081 0.919 40 H 0.104 0.896 41 H 0.071 0.929 42 H 0.072 0.928 43 H 0.110 0.890 44 H 0.110 0.890 45 H 0.272 0.728 46 H 0.097 0.903 47 H 0.078 0.922 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.774 11.926 -29.548 33.636 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.242 4.242 2 C 0.100 3.900 3 C -0.199 4.199 4 C -0.241 4.241 5 O -0.280 6.280 6 C 0.407 3.593 7 O -0.455 6.455 8 N -0.351 5.351 9 C 0.032 3.968 10 H 0.128 0.872 11 C -0.173 4.173 12 C -0.130 4.130 13 H 0.121 0.879 14 C 0.001 3.999 15 O -0.275 6.275 16 C 0.319 3.681 17 O -0.377 6.377 18 C -0.248 4.248 19 S 0.086 5.914 20 C -0.670 4.670 21 H 0.109 0.891 22 C -0.112 4.112 23 N -0.513 5.513 24 Si 0.681 3.319 25 H -0.191 1.191 26 H -0.160 1.160 27 H -0.198 1.198 28 C -0.185 4.185 29 H 0.079 0.921 30 H 0.089 0.911 31 H 0.107 0.893 32 H 0.085 0.915 33 H 0.099 0.901 34 H 0.086 0.914 35 H 0.106 0.894 36 H 0.089 0.911 37 H 0.078 0.922 38 H 0.242 0.758 39 H 0.100 0.900 40 H 0.122 0.878 41 H 0.090 0.910 42 H 0.090 0.910 43 H 0.128 0.872 44 H 0.128 0.872 45 H 0.082 0.918 46 H 0.115 0.885 47 H 0.096 0.904 Dipole moment (debyes) X Y Z Total from point charges 10.781 10.301 -29.988 33.491 hybrid contribution -0.130 0.735 0.735 1.047 sum 10.651 11.036 -29.253 33.030 Atomic orbital electron populations 1.22524 0.93849 1.05153 1.02632 1.22093 0.94476 0.91511 0.81932 1.21871 1.02253 0.92470 1.03264 1.22521 1.01527 1.03519 0.96507 1.86305 1.71520 1.23514 1.46626 1.18049 0.78667 0.80555 0.82071 1.90908 1.40906 1.70368 1.43342 1.44384 1.55259 1.11895 1.23606 1.21795 0.96060 0.79289 0.99638 0.87191 1.23364 0.98649 1.01339 0.93958 1.22685 0.97718 0.99386 0.93184 0.87856 1.23011 0.96884 0.95993 0.83996 1.86512 1.70574 1.43220 1.27219 1.23254 0.76875 0.84270 0.83653 1.90664 1.48617 1.18907 1.79535 1.23007 1.03176 1.05006 0.93589 1.84798 1.77054 1.13582 1.16013 1.22266 1.42525 0.99837 1.02403 0.89057 1.24696 0.93366 0.98824 0.94285 1.69936 1.37433 1.37007 1.06912 0.86742 0.81509 0.84799 0.78832 1.19126 1.15980 1.19783 1.23567 0.96676 1.03547 0.94692 0.92052 0.91071 0.89340 0.91456 0.90066 0.91355 0.89370 0.91077 0.92184 0.75755 0.90027 0.87801 0.91046 0.90951 0.87224 0.87193 0.91817 0.88452 0.90366 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -1.39 8.37 37.16 0.31 -1.08 16 2 C 0.14 1.01 1.13 -90.62 -0.10 0.91 16 3 C -0.14 -0.72 8.85 37.16 0.33 -0.39 16 4 C -0.18 -1.30 8.37 37.16 0.31 -0.99 16 5 O -0.36 -3.28 9.94 -40.32 -0.40 -3.68 16 6 C 0.65 6.35 8.06 54.05 0.44 6.78 16 7 O -0.57 -6.71 11.48 -19.28 -0.22 -6.93 16 8 N -0.69 -5.15 5.27 -57.94 -0.31 -5.45 16 9 C 0.14 0.97 4.32 -67.12 -0.29 0.68 16 10 H 0.11 0.87 7.46 -51.93 -0.39 0.49 16 11 C -0.13 -0.77 7.39 -25.92 -0.19 -0.96 16 12 C -0.11 -0.86 3.90 -89.81 -0.35 -1.21 16 13 H 0.10 0.78 8.14 -51.93 -0.42 0.35 16 14 C 0.08 0.83 5.30 37.16 0.20 1.02 16 15 O -0.36 -5.17 10.22 -39.25 -0.40 -5.57 16 16 C 0.48 8.53 7.97 36.01 0.29 8.82 16 17 O -0.49 -10.02 15.61 -18.75 -0.29 -10.31 16 18 C -0.10 -1.93 6.27 36.01 0.23 -1.70 16 19 S -0.14 -3.47 18.55 -107.50 -1.99 -5.47 16 20 C -0.52 -14.79 10.04 30.94 0.31 -14.48 16 21 H 0.09 2.69 8.03 -52.49 -0.42 2.27 16 22 C 0.10 2.80 5.50 -17.43 -0.10 2.70 16 23 N -0.88 -26.04 13.97 55.49 0.78 -25.27 16 24 Si 0.86 21.29 27.74 -169.99 -4.72 16.57 16 25 H -0.27 -6.55 7.11 56.52 0.40 -6.14 16 26 H -0.24 -5.82 6.74 56.52 0.38 -5.44 16 27 H -0.27 -6.53 7.11 56.52 0.40 -6.13 16 28 C -0.15 -1.16 7.43 -25.92 -0.19 -1.35 16 29 H 0.06 0.45 8.14 -51.93 -0.42 0.03 16 30 H 0.07 0.41 8.14 -51.93 -0.42 -0.01 16 31 H 0.09 0.87 5.88 -51.93 -0.31 0.56 16 32 H 0.07 0.32 8.14 -51.93 -0.42 -0.10 16 33 H 0.08 0.28 8.14 -51.92 -0.42 -0.14 16 34 H 0.07 0.35 8.14 -51.93 -0.42 -0.08 16 35 H 0.09 0.82 5.88 -51.93 -0.31 0.51 16 36 H 0.07 0.38 8.14 -51.93 -0.42 -0.04 16 37 H 0.06 0.40 8.14 -51.93 -0.42 -0.03 16 38 H 0.41 2.30 8.81 -40.82 -0.36 1.94 16 39 H 0.08 0.39 8.14 -51.93 -0.42 -0.03 16 40 H 0.10 0.52 8.10 -51.93 -0.42 0.10 16 41 H 0.07 0.77 8.13 -51.93 -0.42 0.35 16 42 H 0.07 0.79 7.84 -51.93 -0.41 0.38 16 43 H 0.11 1.98 8.14 -51.92 -0.42 1.56 16 44 H 0.11 1.98 8.14 -51.91 -0.42 1.56 16 45 H 0.27 7.49 8.31 -40.82 -0.34 7.15 16 46 H 0.10 0.75 7.90 -51.93 -0.41 0.34 16 47 H 0.08 0.70 8.14 -51.93 -0.42 0.28 16 LS Contribution 400.68 15.07 6.04 6.04 Total: -1.00 -33.59 400.68 -8.00 -41.59 By element: Atomic # 1 Polarization: 7.39 SS G_CDS: -7.67 Total: -0.28 kcal Atomic # 6 Polarization: -2.42 SS G_CDS: 1.18 Total: -1.24 kcal Atomic # 7 Polarization: -31.19 SS G_CDS: 0.47 Total: -30.72 kcal Atomic # 8 Polarization: -25.18 SS G_CDS: -1.32 Total: -26.50 kcal Atomic # 14 Polarization: 21.29 SS G_CDS: -4.72 Total: 16.57 kcal Atomic # 16 Polarization: -3.47 SS G_CDS: -1.99 Total: -5.47 kcal Total LS contribution 6.04 Total: 6.04 kcal Total: -33.59 -8.00 -41.59 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001123352307.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -113.963 kcal (2) G-P(sol) polarization free energy of solvation -33.593 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -147.556 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.000 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.593 kcal (6) G-S(sol) free energy of system = (1) + (5) -155.556 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.68 seconds