Wall clock time and date at job start Wed Apr 1 2020 03:20:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 C 1.52997 * 109.47156 * 2 1 4 4 C 1.53002 * 109.46737 * 239.99693 * 2 1 3 5 5 O 1.45194 * 109.47103 * 120.00117 * 2 1 3 6 6 C 1.34639 * 117.00589 * 59.99473 * 5 2 1 7 7 O 1.21515 * 119.99318 * 0.02562 * 6 5 2 8 8 N 1.34770 * 120.00430 * 179.97438 * 6 5 2 9 9 C 1.46503 * 120.00216 * 180.02562 * 8 6 5 10 10 H 1.08997 * 112.84497 * 23.80942 * 9 8 6 11 11 C 1.53782 * 113.61392 * 155.00199 * 9 8 6 12 12 C 1.53779 * 87.08157 * 89.11846 * 11 9 8 13 13 H 1.09003 * 113.61329 * 270.80217 * 12 11 9 14 14 C 1.52998 * 113.61452 * 139.97845 * 12 11 9 15 15 O 1.45207 * 109.46757 * 175.00012 * 14 12 11 16 16 C 1.34227 * 116.99435 * 180.02562 * 15 14 12 17 17 O 1.20826 * 120.00314 * 359.97438 * 16 15 14 18 18 C 1.50703 * 119.99724 * 180.02562 * 16 15 14 19 19 S 1.81000 * 109.47038 * 179.97438 * 18 16 15 20 20 C 1.76209 * 99.99875 * 179.97438 * 19 18 16 21 21 H 1.07999 * 119.99972 * 359.97438 * 20 19 18 22 22 C 1.38798 * 119.99599 * 180.02562 * 20 19 18 23 23 N 1.31634 * 119.99397 * 180.02562 * 22 20 19 24 24 Si 1.86798 * 120.00627 * 359.97438 * 22 20 19 25 25 H 1.48493 * 109.47326 * 270.00578 * 24 22 20 26 26 H 1.48506 * 109.46545 * 30.00328 * 24 22 20 27 27 H 1.48498 * 109.47210 * 150.00039 * 24 22 20 28 28 C 1.53773 * 113.61500 * 252.50045 * 9 8 6 29 29 H 1.09004 * 109.46795 * 300.00012 * 1 2 3 30 30 H 1.08994 * 109.47183 * 60.00074 * 1 2 3 31 31 H 1.08997 * 109.47302 * 180.02562 * 1 2 3 32 32 H 1.09000 * 109.47355 * 180.02562 * 3 2 1 33 33 H 1.09007 * 109.46942 * 300.00259 * 3 2 1 34 34 H 1.09002 * 109.47028 * 59.99802 * 3 2 1 35 35 H 1.08997 * 109.47044 * 299.99938 * 4 2 1 36 36 H 1.09002 * 109.46954 * 60.00469 * 4 2 1 37 37 H 1.09000 * 109.46957 * 179.97438 * 4 2 1 38 38 H 0.97002 * 120.00028 * 0.02562 * 8 6 5 39 39 H 1.09001 * 113.61633 * 334.56643 * 11 9 8 40 40 H 1.09000 * 113.61375 * 203.66669 * 11 9 8 41 41 H 1.09000 * 109.46945 * 55.00184 * 14 12 11 42 42 H 1.08990 * 109.47435 * 294.99833 * 14 12 11 43 43 H 1.09000 * 109.47235 * 59.99344 * 18 16 15 44 44 H 1.09005 * 109.46867 * 299.99384 * 18 16 15 45 45 H 0.97005 * 119.99723 * 179.97438 * 23 22 20 46 46 H 1.08997 * 113.61563 * 156.33367 * 28 9 8 47 47 H 1.08997 * 113.61794 * 25.43256 * 28 9 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0400 -0.7213 -1.2492 5 8 2.0140 -0.6845 1.1855 6 6 1.6522 -1.9723 1.3384 7 8 0.9515 -2.5096 0.5036 8 7 2.0680 -2.6657 2.4167 9 6 1.6748 -4.0671 2.5827 10 1 1.4225 -4.5505 1.6390 11 6 2.6485 -4.8814 3.4509 12 6 1.8079 -4.4465 4.6630 13 1 2.1377 -3.5082 5.1090 14 6 1.6027 -5.5559 5.6964 15 8 0.9034 -5.0192 6.8502 16 6 0.6439 -5.8700 7.8554 17 8 0.9892 -7.0250 7.7738 18 6 -0.0792 -5.3849 9.0855 19 16 -0.2775 -6.7569 10.2492 20 6 -1.1263 -5.9311 11.5540 21 1 -1.3613 -4.8807 11.4656 22 6 -1.4917 -6.6304 12.6960 23 7 -2.1262 -6.0135 13.6705 24 14 -1.0845 -8.4470 12.8493 25 1 -2.2031 -9.2532 12.2983 26 1 0.1581 -8.7413 12.0913 27 1 -0.8846 -8.7904 14.2801 28 6 0.6290 -4.2866 3.6885 29 1 -0.3633 0.5139 0.8900 30 1 -0.3633 0.5138 -0.8899 31 1 -0.3634 -1.0276 0.0005 32 1 3.1300 1.4425 -0.0005 33 1 1.6766 1.9563 -0.8900 34 1 1.6767 1.9563 0.8900 35 1 1.6766 -1.7490 -1.2492 36 1 1.6766 -0.2075 -2.1392 37 1 3.1300 -0.7210 -1.2495 38 1 2.6277 -2.2368 3.0828 39 1 3.6636 -4.4843 3.4584 40 1 2.6138 -5.9536 3.2576 41 1 2.5717 -5.9460 6.0078 42 1 1.0125 -6.3589 5.2550 43 1 -1.0605 -5.0034 8.8033 44 1 0.4983 -4.5893 9.5563 45 1 -2.3819 -6.5023 14.4684 46 1 0.0421 -5.1961 3.5602 47 1 0.0136 -3.4093 3.8879 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001123352307.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:20:44 Heat of formation + Delta-G solvation = -176.408454 kcal Electronic energy + Delta-G solvation = -27078.470277 eV Core-core repulsion = 22966.603436 eV Total energy + Delta-G solvation = -4111.866840 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 345.149 amu Computer time = 0.67 seconds Orbital eigenvalues (eV) -41.96902 -41.51158 -40.30813 -38.01515 -37.36734 -35.34665 -34.69211 -34.09282 -31.68989 -29.28546 -28.35365 -28.28558 -27.88242 -26.72874 -24.67811 -23.19348 -22.42753 -21.14539 -20.33499 -19.86451 -19.32580 -18.68131 -17.74021 -17.63365 -17.34065 -17.17697 -17.04762 -16.56014 -15.99192 -15.84405 -15.49584 -15.39194 -15.15407 -14.93656 -14.73227 -14.40746 -14.03815 -13.59768 -13.51097 -13.35903 -13.32537 -13.24481 -13.05373 -13.00276 -12.90308 -12.85575 -12.79900 -12.50093 -12.31814 -12.08603 -11.89609 -11.86099 -11.78215 -11.45039 -11.38064 -11.18843 -11.16526 -11.10784 -10.62932 -10.18372 -9.06612 -8.52705 -6.26389 0.79485 1.10061 1.13766 1.32111 1.37941 1.49953 1.73012 1.87224 2.23684 2.64412 2.85522 3.11993 3.39675 3.45767 3.64528 3.75737 3.76731 3.81993 3.95768 4.00440 4.10969 4.23876 4.38537 4.42379 4.45372 4.49657 4.62235 4.62804 4.74112 4.77065 4.77859 4.83929 4.89015 4.90200 4.98664 5.04403 5.07118 5.16738 5.28922 5.30511 5.35217 5.49141 5.62264 5.69363 6.11079 6.38992 6.66917 6.91261 7.33666 8.59576 Molecular weight = 345.15amu Principal moments of inertia in cm(-1) A = 0.025969 B = 0.001559 C = 0.001502 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1077.938654 B =17957.643703 C =18641.219282 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.181 4.181 2 C 0.125 3.875 3 C -0.137 4.137 4 C -0.179 4.179 5 O -0.369 6.369 6 C 0.647 3.353 7 O -0.592 6.592 8 N -0.684 5.684 9 C 0.137 3.863 10 H 0.102 0.898 11 C -0.117 4.117 12 C -0.106 4.106 13 H 0.110 0.890 14 C 0.068 3.932 15 O -0.350 6.350 16 C 0.490 3.510 17 O -0.519 6.519 18 C -0.092 4.092 19 S -0.162 6.162 20 C -0.533 4.533 21 H 0.064 0.936 22 C 0.047 3.953 23 N -0.915 5.915 24 Si 0.915 3.085 25 H -0.261 1.261 26 H -0.234 1.234 27 H -0.258 1.258 28 C -0.149 4.149 29 H 0.059 0.941 30 H 0.089 0.911 31 H 0.062 0.938 32 H 0.071 0.929 33 H 0.101 0.899 34 H 0.067 0.933 35 H 0.063 0.937 36 H 0.089 0.911 37 H 0.063 0.937 38 H 0.417 0.583 39 H 0.099 0.901 40 H 0.116 0.884 41 H 0.077 0.923 42 H 0.074 0.926 43 H 0.123 0.877 44 H 0.125 0.875 45 H 0.278 0.722 46 H 0.099 0.901 47 H 0.065 0.935 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 12.226 12.122 -30.988 35.450 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.238 4.238 2 C 0.089 3.911 3 C -0.194 4.194 4 C -0.236 4.236 5 O -0.284 6.284 6 C 0.401 3.599 7 O -0.483 6.483 8 N -0.343 5.343 9 C 0.033 3.967 10 H 0.120 0.880 11 C -0.154 4.154 12 C -0.124 4.124 13 H 0.128 0.872 14 C -0.005 4.005 15 O -0.267 6.267 16 C 0.332 3.668 17 O -0.408 6.408 18 C -0.240 4.240 19 S 0.064 5.936 20 C -0.681 4.681 21 H 0.083 0.917 22 C -0.158 4.158 23 N -0.552 5.552 24 Si 0.736 3.264 25 H -0.186 1.186 26 H -0.158 1.158 27 H -0.183 1.183 28 C -0.188 4.188 29 H 0.078 0.922 30 H 0.108 0.892 31 H 0.081 0.919 32 H 0.090 0.910 33 H 0.119 0.881 34 H 0.086 0.914 35 H 0.082 0.918 36 H 0.107 0.893 37 H 0.082 0.918 38 H 0.254 0.746 39 H 0.117 0.883 40 H 0.134 0.866 41 H 0.095 0.905 42 H 0.092 0.908 43 H 0.141 0.859 44 H 0.143 0.857 45 H 0.087 0.913 46 H 0.117 0.883 47 H 0.083 0.917 Dipole moment (debyes) X Y Z Total from point charges 12.249 10.528 -31.429 35.336 hybrid contribution -0.587 0.819 1.035 1.444 sum 11.662 11.346 -30.394 34.475 Atomic orbital electron populations 1.22481 0.94200 1.03649 1.03483 1.22394 0.94400 0.92705 0.81572 1.21891 1.02510 0.90750 1.04241 1.22468 1.01699 1.02217 0.97226 1.86315 1.71533 1.23125 1.47430 1.18276 0.78537 0.80817 0.82296 1.90900 1.42094 1.70917 1.44392 1.44379 1.54826 1.11937 1.23171 1.21768 0.96481 0.79274 0.99194 0.88014 1.23322 0.98849 1.01853 0.91421 1.22712 0.98275 0.98745 0.92664 0.87211 1.23402 0.96693 0.97356 0.83062 1.86493 1.70474 1.42388 1.27382 1.22787 0.76255 0.83920 0.83823 1.90658 1.49917 1.20024 1.80166 1.22944 1.04703 1.02995 0.93352 1.84618 1.76445 1.16241 1.16292 1.22422 1.42720 0.99024 1.03895 0.91746 1.25564 0.93221 1.03048 0.94013 1.70018 1.38592 1.38901 1.07694 0.85868 0.81370 0.79632 0.79508 1.18609 1.15778 1.18272 1.23595 0.96836 1.03115 0.95248 0.92211 0.89206 0.91922 0.91044 0.88089 0.91383 0.91846 0.89269 0.91787 0.74597 0.88289 0.86591 0.90488 0.90767 0.85899 0.85695 0.91261 0.88302 0.91659 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -2.65 8.37 71.98 0.60 -2.04 16 2 C 0.13 1.74 1.13 -10.79 -0.01 1.73 16 3 C -0.14 -1.13 8.85 71.98 0.64 -0.49 16 4 C -0.18 -2.39 8.37 71.98 0.60 -1.78 16 5 O -0.37 -6.40 9.94 -55.49 -0.55 -6.96 16 6 C 0.65 12.39 8.06 129.79 1.05 13.44 16 7 O -0.59 -14.31 11.48 19.79 0.23 -14.09 16 8 N -0.68 -9.40 5.27 -567.62 -2.99 -12.39 16 9 C 0.14 1.76 4.32 45.51 0.20 1.96 16 10 H 0.10 1.54 7.46 -2.39 -0.02 1.53 16 11 C -0.12 -1.02 7.39 31.12 0.23 -0.79 16 12 C -0.11 -1.40 3.90 -10.27 -0.04 -1.44 16 13 H 0.11 1.37 8.14 -2.39 -0.02 1.35 16 14 C 0.07 1.35 5.30 71.98 0.38 1.73 16 15 O -0.35 -9.46 10.22 -51.39 -0.53 -9.99 16 16 C 0.49 16.72 7.97 71.24 0.57 17.29 16 17 O -0.52 -20.48 15.61 21.96 0.34 -20.13 16 18 C -0.09 -3.44 6.27 71.24 0.45 -2.99 16 19 S -0.16 -7.92 18.55 -56.49 -1.05 -8.97 16 20 C -0.53 -30.43 10.04 67.95 0.68 -29.75 16 21 H 0.06 3.90 8.03 -2.91 -0.02 3.87 16 22 C 0.05 2.73 5.50 84.86 0.47 3.19 16 23 N -0.91 -54.86 13.97 21.65 0.30 -54.56 16 24 Si 0.91 43.68 27.74 68.60 1.90 45.59 16 25 H -0.26 -12.19 7.11 99.48 0.71 -11.48 16 26 H -0.23 -11.03 6.74 99.48 0.67 -10.36 16 27 H -0.26 -11.60 7.11 99.48 0.71 -10.90 16 28 C -0.15 -2.19 7.43 31.12 0.23 -1.96 16 29 H 0.06 0.86 8.14 -2.39 -0.02 0.84 16 30 H 0.09 0.92 8.14 -2.39 -0.02 0.90 16 31 H 0.06 1.27 5.88 -2.39 -0.01 1.25 16 32 H 0.07 0.54 8.14 -2.39 -0.02 0.52 16 33 H 0.10 0.43 8.14 -2.38 -0.02 0.41 16 34 H 0.07 0.58 8.14 -2.39 -0.02 0.56 16 35 H 0.06 1.19 5.88 -2.39 -0.01 1.18 16 36 H 0.09 0.82 8.14 -2.39 -0.02 0.80 16 37 H 0.06 0.78 8.14 -2.39 -0.02 0.76 16 38 H 0.42 4.00 8.81 -92.71 -0.82 3.18 16 39 H 0.10 0.60 8.14 -2.39 -0.02 0.58 16 40 H 0.12 0.81 8.10 -2.39 -0.02 0.79 16 41 H 0.08 1.48 8.13 -2.39 -0.02 1.46 16 42 H 0.07 1.47 7.84 -2.39 -0.02 1.45 16 43 H 0.12 4.30 8.14 -2.40 -0.02 4.28 16 44 H 0.12 4.33 8.14 -2.39 -0.02 4.31 16 45 H 0.28 15.39 8.31 -92.70 -0.77 14.62 16 46 H 0.10 1.42 7.90 -2.39 -0.02 1.40 16 47 H 0.06 1.13 8.14 -2.39 -0.02 1.12 16 Total: -1.00 -72.79 400.68 3.82 -68.98 By element: Atomic # 1 Polarization: 14.31 SS G_CDS: 0.12 Total: 14.43 kcal Atomic # 6 Polarization: -7.95 SS G_CDS: 6.04 Total: -1.91 kcal Atomic # 7 Polarization: -64.26 SS G_CDS: -2.69 Total: -66.95 kcal Atomic # 8 Polarization: -50.66 SS G_CDS: -0.51 Total: -51.16 kcal Atomic # 14 Polarization: 43.68 SS G_CDS: 1.90 Total: 45.59 kcal Atomic # 16 Polarization: -7.92 SS G_CDS: -1.05 Total: -8.97 kcal Total: -72.79 3.82 -68.98 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001123352307.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -107.433 kcal (2) G-P(sol) polarization free energy of solvation -72.794 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -180.227 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.819 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.976 kcal (6) G-S(sol) free energy of system = (1) + (5) -176.408 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.67 seconds