Wall clock time and date at job start Wed Apr 1 2020 03:45:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42900 * 1 3 3 C 1.42902 * 114.00291 * 2 1 4 4 H 1.08997 * 110.88932 * 32.42432 * 3 2 1 5 5 C 1.55160 * 111.03976 * 156.33181 * 3 2 1 6 6 C 1.54327 * 103.02269 * 153.39098 * 5 3 2 7 7 H 1.09000 * 109.77921 * 97.49345 * 6 5 3 8 8 C 1.50699 * 109.99383 * 218.66403 * 6 5 3 9 9 N 1.30714 * 125.52448 * 74.01687 * 8 6 5 10 10 N 1.40447 * 106.78999 * 179.86279 * 9 8 6 11 11 H 0.96993 * 126.81945 * 180.15911 * 10 9 8 12 12 C 1.34426 * 106.35073 * 0.39596 * 10 9 8 13 13 C 1.50702 * 125.95562 * 179.78395 * 12 10 9 14 14 N 1.46495 * 109.47486 * 94.97600 * 13 12 10 15 15 C 1.34776 * 120.00394 * 179.97438 * 14 13 12 16 16 O 1.21285 * 119.99782 * 0.02562 * 15 14 13 17 17 C 1.50699 * 120.00360 * 179.97438 * 15 14 13 18 18 F 1.39899 * 109.46833 * 55.00051 * 17 15 14 19 19 F 1.39903 * 109.47065 * 175.00346 * 17 15 14 20 20 N 1.30822 * 108.08242 * 359.76103 * 12 10 9 21 21 N 1.47024 * 107.26502 * 338.14076 * 6 5 3 22 22 C 1.36938 * 125.64700 * 178.84775 * 21 6 5 23 23 H 1.07997 * 119.99880 * 342.81639 * 22 21 6 24 24 C 1.38809 * 120.00145 * 162.81840 * 22 21 6 25 25 N 1.31616 * 119.99651 * 332.06196 * 24 22 21 26 26 Si 1.86802 * 120.00319 * 152.06050 * 24 22 21 27 27 H 1.48494 * 109.47006 * 180.02562 * 26 24 22 28 28 H 1.48507 * 109.46780 * 300.00025 * 26 24 22 29 29 H 1.48492 * 109.46938 * 59.99733 * 26 24 22 30 30 C 1.47422 * 108.70507 * 358.58341 * 21 6 5 31 31 H 1.09000 * 109.47390 * 180.02562 * 1 2 3 32 32 H 1.09006 * 109.46862 * 300.00699 * 1 2 3 33 33 H 1.08999 * 109.46794 * 60.00043 * 1 2 3 34 34 H 1.09000 * 110.71871 * 271.95653 * 5 3 2 35 35 H 1.09002 * 110.71926 * 35.04581 * 5 3 2 36 36 H 1.09003 * 109.46685 * 214.97522 * 13 12 10 37 37 H 1.09002 * 109.47387 * 334.97211 * 13 12 10 38 38 H 0.97002 * 120.00011 * 359.97438 * 14 13 12 39 39 H 1.08995 * 109.47090 * 295.00371 * 17 15 14 40 40 H 0.96999 * 120.00323 * 353.95905 * 25 24 22 41 41 H 1.09003 * 110.36731 * 143.19430 * 30 21 6 42 42 H 1.08994 * 110.36754 * 265.51755 * 30 21 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0103 1.3054 0.0000 4 1 1.3832 2.0101 0.5460 5 6 3.4485 1.2748 0.5813 6 6 4.1244 2.4840 -0.0989 7 1 4.1024 3.3438 0.5707 8 6 5.5488 2.1448 -0.4555 9 7 5.9212 1.3650 -1.4362 10 7 7.3250 1.3264 -1.4132 11 1 7.9029 0.8347 -2.0173 12 6 7.7081 2.1020 -0.3843 13 6 9.1288 2.3675 0.0427 14 7 9.5982 3.6128 -0.5695 15 6 10.8487 4.0533 -0.3275 16 8 11.5857 3.4182 0.3968 17 6 11.3318 5.3341 -0.9578 18 9 10.4497 6.3721 -0.6391 19 9 12.6076 5.6405 -0.4723 20 7 6.6326 2.5866 0.1814 21 7 3.3606 2.7811 -1.3195 22 6 3.6228 3.7993 -2.1969 23 1 4.2542 4.6222 -1.8961 24 6 3.0769 3.7737 -3.4729 25 7 2.7957 2.6224 -4.0454 26 14 2.7415 5.3732 -4.3777 27 1 2.1614 5.0750 -5.7117 28 1 1.7833 6.1936 -3.5939 29 1 4.0124 6.1225 -4.5461 30 6 2.2697 1.7976 -1.4458 31 1 -0.3634 -1.0276 0.0005 32 1 -0.3633 0.5140 0.8900 33 1 -0.3633 0.5138 -0.8900 34 1 3.4296 1.3992 1.6641 35 1 3.9545 0.3483 0.3099 36 1 9.1710 2.4578 1.1282 37 1 9.7649 1.5425 -0.2783 38 1 9.0089 4.1206 -1.1491 39 1 11.3743 5.2129 -2.0401 40 1 3.0495 1.7915 -3.6141 41 1 1.3760 2.2723 -1.8510 42 1 2.5795 0.9668 -2.0796 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001130251281.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:45:54 Heat of formation + Delta-G solvation = -58.714104 kcal Electronic energy + Delta-G solvation = -30344.584872 eV Core-core repulsion = 25612.733662 eV Total energy + Delta-G solvation = -4731.851209 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 345.140 amu Computer time = 0.78 seconds Orbital eigenvalues (eV) -49.50728 -47.53296 -41.91969 -39.96848 -38.54041 -36.27872 -35.51005 -32.95508 -32.11404 -31.54752 -29.25495 -29.01712 -27.84038 -26.31661 -26.20110 -24.28626 -22.29384 -21.50918 -20.92566 -20.48349 -19.44602 -19.02948 -18.19487 -18.01000 -17.55164 -17.45119 -16.42906 -16.30825 -15.57506 -15.46699 -15.18093 -14.92992 -14.60510 -14.32724 -14.18939 -13.85598 -13.85346 -13.76232 -13.66898 -13.50345 -13.31216 -12.99094 -12.52488 -12.38710 -12.00744 -11.67243 -11.44109 -11.20650 -10.97455 -10.74614 -10.70924 -10.52309 -10.24067 -10.08284 -9.84100 -9.76963 -9.69257 -9.67583 -9.24168 -9.03591 -8.49182 -7.10930 -6.15517 -3.23476 1.51780 1.71326 2.33070 2.81327 3.19281 3.43901 3.47227 3.48670 3.66376 3.69995 3.86353 4.08214 4.15486 4.29611 4.50569 4.64882 4.89638 5.12910 5.17698 5.23813 5.31027 5.42956 5.49817 5.55835 5.61856 5.64358 5.72728 5.85293 5.95358 6.10994 6.28246 6.54005 6.63191 6.68066 6.78281 6.83163 6.94473 7.20199 7.34775 7.56491 7.71098 8.41124 8.42792 8.93119 9.73105 10.22472 11.16775 Molecular weight = 345.14amu Principal moments of inertia in cm(-1) A = 0.011441 B = 0.003005 C = 0.002522 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2446.697737 B = 9314.224208 C =11098.666137 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.033 3.967 2 O -0.382 6.382 3 C 0.068 3.932 4 H 0.070 0.930 5 C -0.112 4.112 6 C 0.242 3.758 7 H 0.073 0.927 8 C 0.232 3.768 9 N -0.262 5.262 10 N -0.481 5.481 11 H 0.435 0.565 12 C 0.232 3.768 13 C 0.209 3.791 14 N -0.706 5.706 15 C 0.477 3.523 16 O -0.502 6.502 17 C 0.260 3.740 18 F -0.183 7.183 19 F -0.175 7.175 20 N -0.516 5.516 21 N -0.573 5.573 22 C -0.337 4.337 23 H 0.065 0.935 24 C -0.018 4.018 25 N -0.910 5.910 26 Si 1.063 2.937 27 H -0.285 1.285 28 H -0.292 1.292 29 H -0.294 1.294 30 C 0.129 3.871 31 H 0.080 0.920 32 H 0.037 0.963 33 H 0.043 0.957 34 H 0.075 0.925 35 H 0.076 0.924 36 H 0.110 0.890 37 H 0.095 0.905 38 H 0.415 0.585 39 H 0.140 0.860 40 H 0.274 0.726 41 H 0.056 0.944 42 H 0.040 0.960 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.013 -0.783 6.543 11.987 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.064 4.064 2 O -0.300 6.300 3 C 0.010 3.990 4 H 0.088 0.912 5 C -0.151 4.151 6 C 0.131 3.869 7 H 0.090 0.910 8 C -0.053 4.053 9 N -0.089 5.089 10 N -0.200 5.200 11 H 0.279 0.721 12 C -0.048 4.048 13 C 0.083 3.917 14 N -0.361 5.361 15 C 0.258 3.742 16 O -0.375 6.375 17 C 0.203 3.797 18 F -0.165 7.165 19 F -0.156 7.156 20 N -0.246 5.246 21 N -0.298 5.298 22 C -0.465 4.465 23 H 0.083 0.917 24 C -0.221 4.221 25 N -0.549 5.549 26 Si 0.893 3.107 27 H -0.211 1.211 28 H -0.219 1.219 29 H -0.222 1.222 30 C 0.003 3.997 31 H 0.098 0.902 32 H 0.056 0.944 33 H 0.062 0.938 34 H 0.094 0.906 35 H 0.095 0.905 36 H 0.128 0.872 37 H 0.113 0.887 38 H 0.251 0.749 39 H 0.157 0.843 40 H 0.085 0.915 41 H 0.074 0.926 42 H 0.058 0.942 Dipole moment (debyes) X Y Z Total from point charges 9.428 -0.778 5.451 10.919 hybrid contribution 0.985 -0.369 0.591 1.206 sum 10.413 -1.147 6.042 12.094 Atomic orbital electron populations 1.22718 0.81569 1.02076 0.99988 1.87849 1.19283 1.27821 1.95028 1.23461 0.93609 0.83776 0.98183 0.91154 1.22581 0.94693 0.98475 0.99331 1.19658 0.80995 0.95203 0.91060 0.90969 1.25855 0.97557 0.92127 0.89726 1.78327 0.85749 1.23285 1.21569 1.48248 1.07130 1.38955 1.25690 0.72090 1.23791 0.96365 0.95014 0.89586 1.19588 0.85300 0.86525 1.00238 1.45868 1.13902 1.25697 1.50638 1.21055 0.82729 0.87607 0.82760 1.90836 1.54542 1.56985 1.35181 1.21579 0.74564 0.83275 1.00270 1.93100 1.68477 1.60172 1.94724 1.93070 1.38834 1.93262 1.90469 1.70363 0.96633 1.26825 1.30768 1.44612 1.27361 1.32861 1.24954 1.19656 1.34982 0.97364 0.94461 0.91702 1.25731 0.99647 1.03601 0.93106 1.70740 1.47649 0.98377 1.38151 0.83561 0.76345 0.74706 0.76123 1.21093 1.21889 1.22167 1.21977 0.92086 0.92771 0.92862 0.90160 0.94444 0.93805 0.90647 0.90523 0.87249 0.88681 0.74934 0.84332 0.91469 0.92598 0.94244 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 19. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.46 10.89 101.05 1.10 1.56 16 2 O -0.38 -6.74 10.52 -35.23 -0.37 -7.11 16 3 C 0.07 1.26 3.49 -24.58 -0.09 1.18 16 4 H 0.07 1.20 7.90 -51.93 -0.41 0.78 16 5 C -0.11 -2.00 6.21 -24.89 -0.15 -2.16 16 6 C 0.24 5.01 3.66 -68.10 -0.25 4.76 16 7 H 0.07 1.47 8.14 -51.93 -0.42 1.05 16 8 C 0.23 4.72 6.56 -156.85 -1.03 3.69 16 9 N -0.26 -5.35 12.78 32.42 0.41 -4.94 16 10 N -0.48 -7.08 7.45 32.62 0.24 -6.84 16 11 H 0.43 4.72 8.96 -182.34 -1.63 3.09 16 12 C 0.23 3.23 7.60 -155.70 -1.18 2.05 16 13 C 0.21 2.08 6.30 -5.20 -0.03 2.05 16 14 N -0.71 -6.63 5.55 -61.47 -0.34 -6.97 16 15 C 0.48 4.78 7.63 -10.99 -0.08 4.69 16 16 O -0.50 -6.69 16.62 5.55 0.09 -6.59 16 17 C 0.26 2.08 5.72 36.01 0.21 2.29 16 18 F -0.18 -1.80 17.32 2.25 0.04 -1.76 16 19 F -0.18 -1.82 16.95 2.25 0.04 -1.78 16 20 N -0.52 -9.18 11.19 -8.16 -0.09 -9.27 16 21 N -0.57 -13.90 3.00 -163.88 -0.49 -14.39 16 22 C -0.34 -9.11 9.70 -15.06 -0.15 -9.26 16 23 H 0.07 1.79 7.97 -52.49 -0.42 1.37 16 24 C -0.02 -0.49 5.09 -17.43 -0.09 -0.58 16 25 N -0.91 -26.79 12.93 55.49 0.72 -26.07 16 26 Si 1.06 24.70 30.00 -169.99 -5.10 19.60 16 27 H -0.29 -6.75 7.11 56.52 0.40 -6.35 16 28 H -0.29 -6.53 7.11 56.52 0.40 -6.13 16 29 H -0.29 -6.58 7.11 56.52 0.40 -6.17 16 30 C 0.13 2.95 5.03 -2.53 -0.01 2.94 16 31 H 0.08 0.92 8.14 -51.93 -0.42 0.49 16 32 H 0.04 0.44 8.11 -51.93 -0.42 0.02 16 33 H 0.04 0.62 8.14 -51.93 -0.42 0.19 16 34 H 0.07 1.14 8.14 -51.93 -0.42 0.72 16 35 H 0.08 1.45 7.84 -51.93 -0.41 1.04 16 36 H 0.11 1.12 8.14 -51.93 -0.42 0.70 16 37 H 0.10 0.73 8.14 -51.93 -0.42 0.31 16 38 H 0.41 3.76 8.46 -40.82 -0.35 3.41 16 39 H 0.14 0.51 8.14 -51.93 -0.42 0.08 16 40 H 0.27 8.22 6.05 -40.82 -0.25 7.97 16 41 H 0.06 1.37 7.95 -51.93 -0.41 0.96 16 42 H 0.04 1.01 6.81 -51.93 -0.35 0.66 16 LS Contribution 370.55 15.07 5.58 5.58 Total: -1.00 -35.68 370.55 -7.43 -43.11 By element: Atomic # 1 Polarization: 10.61 SS G_CDS: -6.40 Total: 4.20 kcal Atomic # 6 Polarization: 14.98 SS G_CDS: -1.76 Total: 13.22 kcal Atomic # 7 Polarization: -68.94 SS G_CDS: 0.45 Total: -68.49 kcal Atomic # 8 Polarization: -13.42 SS G_CDS: -0.28 Total: -13.70 kcal Atomic # 9 Polarization: -3.61 SS G_CDS: 0.08 Total: -3.54 kcal Atomic # 14 Polarization: 24.70 SS G_CDS: -5.10 Total: 19.60 kcal Total LS contribution 5.58 Total: 5.58 kcal Total: -35.68 -7.43 -43.11 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001130251281.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -15.600 kcal (2) G-P(sol) polarization free energy of solvation -35.682 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -51.282 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.432 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.115 kcal (6) G-S(sol) free energy of system = (1) + (5) -58.714 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.78 seconds