Wall clock time and date at job start Wed Apr 1 2020 03:45:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42900 * 1 3 3 C 1.42902 * 114.00291 * 2 1 4 4 H 1.08997 * 110.88932 * 32.42432 * 3 2 1 5 5 C 1.55160 * 111.03976 * 156.33181 * 3 2 1 6 6 C 1.54327 * 103.02269 * 153.39098 * 5 3 2 7 7 H 1.09000 * 109.77921 * 97.49345 * 6 5 3 8 8 C 1.50699 * 109.99383 * 218.66403 * 6 5 3 9 9 N 1.30714 * 125.52448 * 74.01687 * 8 6 5 10 10 N 1.40447 * 106.78999 * 179.86279 * 9 8 6 11 11 H 0.96993 * 126.81945 * 180.15911 * 10 9 8 12 12 C 1.34426 * 106.35073 * 0.39596 * 10 9 8 13 13 C 1.50702 * 125.95562 * 179.78395 * 12 10 9 14 14 N 1.46495 * 109.47486 * 94.97600 * 13 12 10 15 15 C 1.34776 * 120.00394 * 179.97438 * 14 13 12 16 16 O 1.21285 * 119.99782 * 0.02562 * 15 14 13 17 17 C 1.50699 * 120.00360 * 179.97438 * 15 14 13 18 18 F 1.39899 * 109.46833 * 55.00051 * 17 15 14 19 19 F 1.39903 * 109.47065 * 175.00346 * 17 15 14 20 20 N 1.30822 * 108.08242 * 359.76103 * 12 10 9 21 21 N 1.47024 * 107.26502 * 338.14076 * 6 5 3 22 22 C 1.36938 * 125.64700 * 178.84775 * 21 6 5 23 23 H 1.07997 * 119.99880 * 342.81639 * 22 21 6 24 24 C 1.38809 * 120.00145 * 162.81840 * 22 21 6 25 25 N 1.31616 * 119.99651 * 332.06196 * 24 22 21 26 26 Si 1.86802 * 120.00319 * 152.06050 * 24 22 21 27 27 H 1.48494 * 109.47006 * 180.02562 * 26 24 22 28 28 H 1.48507 * 109.46780 * 300.00025 * 26 24 22 29 29 H 1.48492 * 109.46938 * 59.99733 * 26 24 22 30 30 C 1.47422 * 108.70507 * 358.58341 * 21 6 5 31 31 H 1.09000 * 109.47390 * 180.02562 * 1 2 3 32 32 H 1.09006 * 109.46862 * 300.00699 * 1 2 3 33 33 H 1.08999 * 109.46794 * 60.00043 * 1 2 3 34 34 H 1.09000 * 110.71871 * 271.95653 * 5 3 2 35 35 H 1.09002 * 110.71926 * 35.04581 * 5 3 2 36 36 H 1.09003 * 109.46685 * 214.97522 * 13 12 10 37 37 H 1.09002 * 109.47387 * 334.97211 * 13 12 10 38 38 H 0.97002 * 120.00011 * 359.97438 * 14 13 12 39 39 H 1.08995 * 109.47090 * 295.00371 * 17 15 14 40 40 H 0.96999 * 120.00323 * 353.95905 * 25 24 22 41 41 H 1.09003 * 110.36731 * 143.19430 * 30 21 6 42 42 H 1.08994 * 110.36754 * 265.51755 * 30 21 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0103 1.3054 0.0000 4 1 1.3832 2.0101 0.5460 5 6 3.4485 1.2748 0.5813 6 6 4.1244 2.4840 -0.0989 7 1 4.1024 3.3438 0.5707 8 6 5.5488 2.1448 -0.4555 9 7 5.9212 1.3650 -1.4362 10 7 7.3250 1.3264 -1.4132 11 1 7.9029 0.8347 -2.0173 12 6 7.7081 2.1020 -0.3843 13 6 9.1288 2.3675 0.0427 14 7 9.5982 3.6128 -0.5695 15 6 10.8487 4.0533 -0.3275 16 8 11.5857 3.4182 0.3968 17 6 11.3318 5.3341 -0.9578 18 9 10.4497 6.3721 -0.6391 19 9 12.6076 5.6405 -0.4723 20 7 6.6326 2.5866 0.1814 21 7 3.3606 2.7811 -1.3195 22 6 3.6228 3.7993 -2.1969 23 1 4.2542 4.6222 -1.8961 24 6 3.0769 3.7737 -3.4729 25 7 2.7957 2.6224 -4.0454 26 14 2.7415 5.3732 -4.3777 27 1 2.1614 5.0750 -5.7117 28 1 1.7833 6.1936 -3.5939 29 1 4.0124 6.1225 -4.5461 30 6 2.2697 1.7976 -1.4458 31 1 -0.3634 -1.0276 0.0005 32 1 -0.3633 0.5140 0.8900 33 1 -0.3633 0.5138 -0.8900 34 1 3.4296 1.3992 1.6641 35 1 3.9545 0.3483 0.3099 36 1 9.1710 2.4578 1.1282 37 1 9.7649 1.5425 -0.2783 38 1 9.0089 4.1206 -1.1491 39 1 11.3743 5.2129 -2.0401 40 1 3.0495 1.7915 -3.6141 41 1 1.3760 2.2723 -1.8510 42 1 2.5795 0.9668 -2.0796 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001130251281.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:45:54 Heat of formation + Delta-G solvation = -86.611207 kcal Electronic energy + Delta-G solvation = -30345.794581 eV Core-core repulsion = 25612.733662 eV Total energy + Delta-G solvation = -4733.060918 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 345.140 amu Computer time = 0.70 seconds Orbital eigenvalues (eV) -50.21420 -48.25505 -43.26113 -40.83580 -40.08501 -37.77203 -36.45721 -34.75826 -33.56901 -32.76445 -30.89316 -30.17881 -29.30432 -27.53773 -27.24011 -26.07799 -23.84648 -22.33106 -22.15466 -22.08356 -21.04916 -19.94864 -19.35954 -19.01315 -18.81543 -18.52543 -17.73302 -17.30203 -16.95068 -16.42679 -16.34589 -16.10692 -16.05444 -15.63890 -15.61276 -15.17432 -15.07642 -14.93859 -14.67718 -14.57699 -14.33199 -14.16560 -14.07267 -13.64595 -13.22876 -13.05033 -12.97949 -12.66856 -12.53489 -12.45783 -12.29886 -11.93117 -11.74023 -11.67078 -11.38003 -11.13892 -11.09013 -10.65464 -10.58830 -10.54618 -10.48950 -9.10518 -8.30651 -5.34708 0.38006 0.90546 1.34808 1.56514 1.62643 1.66147 1.83099 1.89570 2.58766 2.65131 2.81576 2.84748 3.01468 3.23845 3.43055 3.52589 3.55296 3.68982 3.77875 3.79684 3.91761 4.02983 4.22140 4.37582 4.44024 4.51385 4.56479 4.57839 4.80273 4.83460 4.84325 4.95849 5.06843 5.08487 5.27867 5.30625 5.64195 5.89401 6.11591 6.21239 6.33296 6.56493 6.84391 7.06458 7.68463 8.22725 9.00806 Molecular weight = 345.14amu Principal moments of inertia in cm(-1) A = 0.011441 B = 0.003005 C = 0.002522 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2446.697737 B = 9314.224208 C =11098.666137 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.025 3.975 2 O -0.396 6.396 3 C 0.085 3.915 4 H 0.092 0.908 5 C -0.099 4.099 6 C 0.236 3.764 7 H 0.076 0.924 8 C 0.220 3.780 9 N -0.311 5.311 10 N -0.467 5.467 11 H 0.452 0.548 12 C 0.259 3.741 13 C 0.213 3.787 14 N -0.700 5.700 15 C 0.482 3.518 16 O -0.537 6.537 17 C 0.262 3.738 18 F -0.194 7.194 19 F -0.189 7.189 20 N -0.540 5.540 21 N -0.589 5.589 22 C -0.333 4.333 23 H 0.056 0.944 24 C -0.069 4.069 25 N -0.940 5.940 26 Si 1.112 2.888 27 H -0.294 1.294 28 H -0.277 1.277 29 H -0.278 1.278 30 C 0.139 3.861 31 H 0.104 0.896 32 H 0.062 0.938 33 H 0.032 0.968 34 H 0.112 0.888 35 H 0.063 0.937 36 H 0.112 0.888 37 H 0.126 0.874 38 H 0.418 0.582 39 H 0.191 0.809 40 H 0.256 0.744 41 H 0.028 0.972 42 H 0.001 0.999 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.980 -0.200 7.578 13.342 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.071 4.071 2 O -0.315 6.315 3 C 0.026 3.974 4 H 0.110 0.890 5 C -0.138 4.138 6 C 0.126 3.874 7 H 0.093 0.907 8 C -0.065 4.065 9 N -0.139 5.139 10 N -0.188 5.188 11 H 0.300 0.700 12 C -0.021 4.021 13 C 0.088 3.912 14 N -0.354 5.354 15 C 0.264 3.736 16 O -0.413 6.413 17 C 0.206 3.794 18 F -0.175 7.175 19 F -0.171 7.171 20 N -0.270 5.270 21 N -0.314 5.314 22 C -0.461 4.461 23 H 0.074 0.926 24 C -0.266 4.266 25 N -0.582 5.582 26 Si 0.936 3.064 27 H -0.220 1.220 28 H -0.203 1.203 29 H -0.204 1.204 30 C 0.013 3.987 31 H 0.123 0.877 32 H 0.080 0.920 33 H 0.051 0.949 34 H 0.130 0.870 35 H 0.082 0.918 36 H 0.130 0.870 37 H 0.144 0.856 38 H 0.255 0.745 39 H 0.208 0.792 40 H 0.067 0.933 41 H 0.046 0.954 42 H 0.019 0.981 Dipole moment (debyes) X Y Z Total from point charges 10.418 -0.200 6.507 12.285 hybrid contribution 0.775 -0.609 0.340 1.043 sum 11.193 -0.809 6.847 13.146 Atomic orbital electron populations 1.22985 0.79454 1.03990 1.00623 1.87836 1.21633 1.27101 1.94897 1.23246 0.94610 0.84675 0.94903 0.88988 1.22540 0.93591 0.96612 1.01080 1.19728 0.81611 0.96519 0.89579 0.90651 1.25498 0.97888 0.92833 0.90281 1.78220 0.88680 1.24538 1.22490 1.48061 1.05586 1.38996 1.26142 0.70019 1.24371 0.97155 0.92662 0.87873 1.19766 0.83050 0.87937 1.00473 1.45788 1.13848 1.25440 1.50358 1.21376 0.82203 0.87975 0.82006 1.90828 1.55410 1.58298 1.36764 1.21965 0.73387 0.81611 1.02479 1.93081 1.68859 1.60569 1.94998 1.93042 1.39843 1.93262 1.90904 1.70323 0.96898 1.28081 1.31710 1.44687 1.28803 1.32762 1.25192 1.19780 1.33921 0.97692 0.94734 0.92592 1.27015 0.99878 1.05413 0.94309 1.70858 1.50182 0.98420 1.38762 0.82910 0.77062 0.71700 0.74693 1.22020 1.20350 1.20362 1.21779 0.90522 0.91067 0.95359 0.87727 0.91977 0.94928 0.86999 0.91793 0.86974 0.85599 0.74526 0.79225 0.93324 0.95353 0.98075 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.66 10.89 113.37 1.23 1.89 16 2 O -0.40 -13.70 10.52 -148.98 -1.57 -15.27 16 3 C 0.08 3.09 3.49 31.99 0.11 3.20 16 4 H 0.09 2.97 7.90 -2.39 -0.02 2.95 16 5 C -0.10 -3.48 6.21 31.78 0.20 -3.28 16 6 C 0.24 9.77 3.66 44.60 0.16 9.93 16 7 H 0.08 3.04 8.14 -2.39 -0.02 3.02 16 8 C 0.22 8.94 6.56 138.63 0.91 9.85 16 9 N -0.31 -12.81 12.78 -51.33 -0.66 -13.47 16 10 N -0.47 -13.26 7.45 -50.71 -0.38 -13.64 16 11 H 0.45 9.14 8.96 -213.10 -1.91 7.23 16 12 C 0.26 6.78 7.60 138.23 1.05 7.84 16 13 C 0.21 3.71 6.30 85.63 0.54 4.24 16 14 N -0.70 -11.45 5.55 -466.79 -2.59 -14.04 16 15 C 0.48 8.57 7.63 87.66 0.67 9.24 16 16 O -0.54 -13.37 16.62 -3.04 -0.05 -13.43 16 17 C 0.26 3.54 5.72 71.24 0.41 3.94 16 18 F -0.19 -3.41 17.32 44.97 0.78 -2.63 16 19 F -0.19 -3.60 16.95 44.97 0.76 -2.83 16 20 N -0.54 -18.69 11.19 -179.73 -2.01 -20.70 16 21 N -0.59 -29.29 3.00 -672.38 -2.02 -31.31 16 22 C -0.33 -18.37 9.70 84.03 0.81 -17.55 16 23 H 0.06 3.13 7.97 -2.91 -0.02 3.11 16 24 C -0.07 -3.90 5.09 84.86 0.43 -3.47 16 25 N -0.94 -57.58 12.93 21.65 0.28 -57.30 16 26 Si 1.11 50.38 30.00 68.60 2.06 52.44 16 27 H -0.29 -13.65 7.11 99.48 0.71 -12.94 16 28 H -0.28 -11.80 7.11 99.48 0.71 -11.09 16 29 H -0.28 -11.70 7.11 99.48 0.71 -10.99 16 30 C 0.14 6.63 5.03 86.86 0.44 7.06 16 31 H 0.10 2.19 8.14 -2.39 -0.02 2.17 16 32 H 0.06 1.32 8.11 -2.38 -0.02 1.30 16 33 H 0.03 0.91 8.14 -2.39 -0.02 0.89 16 34 H 0.11 3.09 8.14 -2.39 -0.02 3.07 16 35 H 0.06 2.40 7.84 -2.39 -0.02 2.38 16 36 H 0.11 2.02 8.14 -2.39 -0.02 2.00 16 37 H 0.13 1.50 8.14 -2.39 -0.02 1.48 16 38 H 0.42 6.59 8.46 -92.71 -0.78 5.81 16 39 H 0.19 0.65 8.14 -2.39 -0.02 0.63 16 40 H 0.26 16.28 6.05 -92.71 -0.56 15.72 16 41 H 0.03 1.46 7.95 -2.39 -0.02 1.44 16 42 H 0.00 0.08 6.81 -2.39 -0.02 0.06 16 Total: -1.00 -81.23 370.55 0.19 -81.03 By element: Atomic # 1 Polarization: 19.63 SS G_CDS: -1.39 Total: 18.24 kcal Atomic # 6 Polarization: 25.93 SS G_CDS: 6.97 Total: 32.89 kcal Atomic # 7 Polarization: -143.09 SS G_CDS: -7.37 Total: -150.46 kcal Atomic # 8 Polarization: -27.07 SS G_CDS: -1.62 Total: -28.69 kcal Atomic # 9 Polarization: -7.00 SS G_CDS: 1.54 Total: -5.46 kcal Atomic # 14 Polarization: 50.38 SS G_CDS: 2.06 Total: 52.44 kcal Total: -81.23 0.19 -81.03 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001130251281.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -5.578 kcal (2) G-P(sol) polarization free energy of solvation -81.225 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -86.803 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.192 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -81.034 kcal (6) G-S(sol) free energy of system = (1) + (5) -86.611 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.70 seconds