Wall clock time and date at job start Wed Apr 1 2020 03:22:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46505 * 1 3 3 N 1.28471 * 124.88609 * 2 1 4 4 C 1.31802 * 110.07361 * 179.97438 * 3 2 1 5 5 C 1.47716 * 126.51708 * 179.97438 * 4 3 2 6 6 O 1.21573 * 120.00017 * 180.02562 * 5 4 3 7 7 N 1.34777 * 119.99706 * 0.02562 * 5 4 3 8 8 C 1.46499 * 119.99665 * 179.72381 * 7 5 4 9 9 C 1.53004 * 109.47198 * 180.27868 * 8 7 5 10 10 N 1.46898 * 109.46947 * 180.02562 * 9 8 7 11 11 C 1.46904 * 110.99459 * 179.97438 * 10 9 8 12 12 C 1.50705 * 109.46807 * 179.97438 * 11 10 9 13 13 O 1.21290 * 120.00074 * 0.02562 * 12 11 10 14 14 N 1.34775 * 119.99911 * 179.97438 * 12 11 10 15 15 C 1.37094 * 120.00169 * 179.97438 * 14 12 11 16 16 H 1.07999 * 120.00091 * 0.02562 * 15 14 12 17 17 C 1.38953 * 120.00239 * 180.02562 * 15 14 12 18 18 N 1.31409 * 120.00067 * 0.02562 * 17 15 14 19 19 Si 1.86802 * 120.00103 * 180.02562 * 17 15 14 20 20 H 1.48505 * 109.46970 * 359.97438 * 19 17 15 21 21 H 1.48498 * 109.47040 * 119.99982 * 19 17 15 22 22 H 1.48497 * 109.47112 * 239.99867 * 19 17 15 23 23 C 1.41501 * 106.96561 * 0.22798 * 4 3 2 24 24 C 1.35033 * 124.88786 * 179.97438 * 2 1 3 25 25 C 1.50708 * 126.37970 * 0.03648 * 24 2 1 26 26 F 1.39898 * 109.47385 * 299.99462 * 25 24 2 27 27 F 1.39898 * 109.47144 * 59.99956 * 25 24 2 28 28 H 1.08994 * 109.46920 * 89.97538 * 1 2 3 29 29 H 1.09001 * 109.46590 * 209.98003 * 1 2 3 30 30 H 1.09006 * 109.46911 * 329.97806 * 1 2 3 31 31 H 0.97001 * 120.00485 * 0.02562 * 7 5 4 32 32 H 1.09009 * 109.47454 * 300.27637 * 8 7 5 33 33 H 1.08998 * 109.47492 * 60.27932 * 8 7 5 34 34 H 1.08995 * 109.46638 * 300.00121 * 9 8 7 35 35 H 1.09006 * 109.47139 * 60.00254 * 9 8 7 36 36 H 1.00894 * 111.00658 * 56.04933 * 10 9 8 37 37 H 1.08992 * 109.47591 * 299.99636 * 11 10 9 38 38 H 1.09001 * 109.47600 * 60.00212 * 11 10 9 39 39 H 0.97001 * 120.00445 * 0.02562 * 14 12 11 40 40 H 0.96999 * 120.00459 * 179.97438 * 18 17 15 41 41 H 1.07995 * 127.24572 * 179.75423 * 23 4 3 42 42 H 1.09000 * 109.46440 * 179.97438 * 25 24 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 7 2.1998 1.0538 0.0000 4 6 3.4741 0.7169 0.0006 5 6 4.6274 1.6399 0.0002 6 8 5.7598 1.1977 0.0003 7 7 4.4241 2.9722 -0.0002 8 6 5.5679 3.8876 0.0055 9 6 5.0647 5.3325 0.0107 10 7 6.2117 6.2504 0.0159 11 6 5.7657 7.6501 0.0204 12 6 6.9670 8.5600 0.0262 13 8 8.0847 8.0888 0.0262 14 7 6.7995 9.8973 0.0305 15 6 7.8923 10.7251 0.0364 16 1 8.8875 10.3056 0.0371 17 6 7.7195 12.1038 0.0413 18 7 6.5086 12.6143 0.0408 19 14 9.2086 13.2317 0.0486 20 1 10.4485 12.4145 0.0485 21 1 9.1828 14.0932 -1.1607 22 1 9.1780 14.0840 1.2642 23 6 3.5272 -0.6971 -0.0045 24 6 2.2374 -1.1076 0.0005 25 6 1.7534 -2.5349 0.0004 26 9 0.9786 -2.7647 1.1423 27 9 0.9797 -2.7648 -1.1423 28 1 -0.3633 0.0004 -1.0276 29 1 -0.3632 -0.8902 0.5135 30 1 -0.3633 0.8898 0.5142 31 1 3.5206 3.3251 0.0000 32 1 6.1712 3.7098 0.8959 33 1 6.1742 3.7172 -0.8841 34 1 4.4615 5.5103 -0.8795 35 1 4.4585 5.5030 0.9005 36 1 6.8237 6.0688 -0.7654 37 1 5.1673 7.8436 -0.8698 38 1 5.1644 7.8371 0.9101 39 1 5.9056 10.2741 0.0302 40 1 6.3879 13.5767 0.0447 41 1 4.4109 -1.3180 -0.0091 42 1 2.6100 -3.2089 0.0004 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001131355424.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:22:27 Heat of formation + Delta-G solvation = -88.060546 kcal Electronic energy + Delta-G solvation = -28101.653086 eV Core-core repulsion = 23368.529320 eV Total energy + Delta-G solvation = -4733.123767 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 345.140 amu Computer time = 0.56 seconds Orbital eigenvalues (eV) -49.78110 -47.76146 -43.31648 -39.64413 -38.30996 -36.31111 -34.43351 -34.10776 -33.73082 -32.62725 -31.23507 -29.67136 -28.08557 -26.75846 -25.96448 -24.23504 -23.26532 -22.05327 -21.85938 -20.28896 -19.28608 -18.72805 -18.10289 -17.96814 -17.89544 -17.04379 -16.81598 -16.37852 -16.15060 -15.89042 -15.71195 -15.13871 -14.68664 -14.57883 -14.51298 -14.37085 -14.11868 -13.95651 -13.89968 -13.54552 -13.45672 -13.30171 -13.21882 -13.06465 -12.41145 -12.34904 -11.91999 -11.52197 -11.49705 -11.42816 -11.41199 -11.04662 -10.47335 -10.33649 -10.22203 -10.03672 -9.72879 -9.52045 -9.25702 -8.49836 -8.12326 -7.96359 -6.41856 -3.82583 0.94241 1.31428 1.70076 2.63119 2.95277 3.05616 3.16903 3.27622 3.35217 3.37052 3.61024 3.90044 3.91291 4.12753 4.20441 4.32503 4.43914 4.45517 4.69047 4.74258 4.79969 4.91569 4.99966 5.06041 5.18578 5.26407 5.40572 5.66889 5.73485 5.82905 5.90044 5.92669 5.95440 6.15567 6.25897 7.04151 7.11471 7.34188 7.55718 7.58043 7.92232 8.06449 8.61000 9.18021 9.53993 10.05317 10.75951 Molecular weight = 345.14amu Principal moments of inertia in cm(-1) A = 0.038169 B = 0.001340 C = 0.001306 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 733.411002 B =20896.014605 C =21431.656642 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.077 3.923 2 N -0.257 5.257 3 N -0.237 5.237 4 C -0.015 4.015 5 C 0.605 3.395 6 O -0.526 6.526 7 N -0.714 5.714 8 C 0.120 3.880 9 C 0.049 3.951 10 N -0.665 5.665 11 C 0.052 3.948 12 C 0.440 3.560 13 O -0.582 6.582 14 N -0.564 5.564 15 C -0.299 4.299 16 H 0.104 0.896 17 C 0.022 3.978 18 N -0.902 5.902 19 Si 0.930 3.070 20 H -0.268 1.268 21 H -0.282 1.282 22 H -0.281 1.281 23 C -0.128 4.128 24 C -0.078 4.078 25 C 0.348 3.652 26 F -0.195 7.195 27 F -0.194 7.194 28 H 0.093 0.907 29 H 0.099 0.901 30 H 0.105 0.895 31 H 0.406 0.594 32 H 0.084 0.916 33 H 0.072 0.928 34 H 0.034 0.966 35 H 0.078 0.922 36 H 0.353 0.647 37 H 0.045 0.955 38 H 0.087 0.913 39 H 0.392 0.608 40 H 0.271 0.729 41 H 0.174 0.826 42 H 0.144 0.856 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -18.206 -29.699 -0.971 34.849 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.063 4.063 2 N -0.046 5.046 3 N -0.074 5.074 4 C -0.174 4.174 5 C 0.388 3.612 6 O -0.400 6.400 7 N -0.365 5.365 8 C -0.004 4.004 9 C -0.081 4.081 10 N -0.298 5.298 11 C -0.080 4.080 12 C 0.226 3.774 13 O -0.466 6.466 14 N -0.200 5.200 15 C -0.429 4.429 16 H 0.122 0.878 17 C -0.179 4.179 18 N -0.543 5.543 19 Si 0.757 3.243 20 H -0.192 1.192 21 H -0.208 1.208 22 H -0.207 1.207 23 C -0.156 4.156 24 C -0.202 4.202 25 C 0.293 3.707 26 F -0.176 7.176 27 F -0.175 7.175 28 H 0.112 0.888 29 H 0.117 0.883 30 H 0.124 0.876 31 H 0.241 0.759 32 H 0.102 0.898 33 H 0.090 0.910 34 H 0.052 0.948 35 H 0.096 0.904 36 H 0.172 0.828 37 H 0.063 0.937 38 H 0.106 0.894 39 H 0.225 0.775 40 H 0.081 0.919 41 H 0.192 0.808 42 H 0.161 0.839 Dipole moment (debyes) X Y Z Total from point charges -17.459 -29.217 -0.294 34.037 hybrid contribution -0.519 0.559 -0.894 1.175 sum -17.978 -28.658 -1.188 33.851 Atomic orbital electron populations 1.22415 0.72292 1.06254 1.05294 1.45322 1.08097 1.01999 1.49178 1.73588 1.03089 1.13366 1.17396 1.21957 0.90798 0.93909 1.10689 1.16711 0.86330 0.81415 0.76726 1.90842 1.22267 1.76999 1.49886 1.45731 1.10950 1.05355 1.74502 1.21358 0.87784 0.87450 1.03773 1.22077 0.93643 0.91226 1.01164 1.59938 1.16305 1.01953 1.51621 1.21672 0.96865 0.88145 1.01365 1.19779 0.89953 0.83135 0.84576 1.90534 1.25427 1.75313 1.55287 1.41860 1.09711 1.04085 1.64379 1.19771 0.88580 0.87075 1.47441 0.87811 1.25264 0.97912 0.97462 0.97311 1.69617 1.20815 1.13196 1.50718 0.85793 0.81180 0.79655 0.77682 1.19178 1.20784 1.20748 1.21587 0.95843 0.94068 1.04143 1.21775 0.92444 0.90552 1.15454 1.19855 0.88355 0.91043 0.71459 1.93042 1.78015 1.95371 1.51140 1.93055 1.78073 1.95397 1.51005 0.88849 0.88255 0.87622 0.75898 0.89782 0.90956 0.94820 0.90363 0.82779 0.93687 0.89445 0.77461 0.91933 0.80834 0.83913 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.08 0.28 11.04 59.85 0.66 0.94 16 2 N -0.26 -1.87 3.70 -63.85 -0.24 -2.11 16 3 N -0.24 -2.19 11.67 33.42 0.39 -1.80 16 4 C -0.01 -0.15 7.13 -82.77 -0.59 -0.74 16 5 C 0.60 7.33 7.83 -12.39 -0.10 7.23 16 6 O -0.53 -8.00 16.93 5.30 0.09 -7.91 16 7 N -0.71 -7.45 5.55 -61.29 -0.34 -7.79 16 8 C 0.12 1.39 5.93 -4.04 -0.02 1.37 16 9 C 0.05 0.57 5.80 -3.82 -0.02 0.55 16 10 N -0.66 -10.53 6.13 -115.05 -0.70 -11.23 16 11 C 0.05 0.90 6.17 -4.97 -0.03 0.87 16 12 C 0.44 10.38 7.82 -10.98 -0.09 10.30 16 13 O -0.58 -15.88 15.78 5.55 0.09 -15.79 16 14 N -0.56 -14.27 5.29 -10.96 -0.06 -14.33 16 15 C -0.30 -8.37 9.68 -14.93 -0.14 -8.52 16 16 H 0.10 3.06 7.16 -52.49 -0.38 2.68 16 17 C 0.02 0.59 5.50 -17.47 -0.10 0.49 16 18 N -0.90 -24.51 13.05 55.50 0.72 -23.79 16 19 Si 0.93 21.09 29.55 -169.99 -5.02 16.07 16 20 H -0.27 -6.08 7.11 56.52 0.40 -5.68 16 21 H -0.28 -6.28 7.11 56.52 0.40 -5.88 16 22 H -0.28 -6.29 7.11 56.52 0.40 -5.89 16 23 C -0.13 -1.04 10.71 -39.37 -0.42 -1.47 16 24 C -0.08 -0.53 6.35 -82.21 -0.52 -1.05 16 25 C 0.35 1.47 5.27 36.01 0.19 1.66 16 26 F -0.19 -1.06 16.30 2.25 0.04 -1.02 16 27 F -0.19 -1.07 17.25 2.25 0.04 -1.03 16 28 H 0.09 0.23 8.14 -51.93 -0.42 -0.19 16 29 H 0.10 0.26 6.83 -51.93 -0.35 -0.10 16 30 H 0.11 0.26 8.14 -51.93 -0.42 -0.16 16 31 H 0.41 3.47 8.20 -40.82 -0.33 3.13 16 32 H 0.08 1.10 8.14 -51.92 -0.42 0.68 16 33 H 0.07 0.88 8.14 -51.93 -0.42 0.46 16 34 H 0.03 0.35 8.14 -51.93 -0.42 -0.07 16 35 H 0.08 0.85 8.14 -51.93 -0.42 0.42 16 36 H 0.35 5.76 8.43 -39.29 -0.33 5.43 16 37 H 0.05 0.69 8.14 -51.93 -0.42 0.27 16 38 H 0.09 1.38 8.14 -51.93 -0.42 0.96 16 39 H 0.39 9.44 7.90 -40.82 -0.32 9.12 16 40 H 0.27 6.94 8.31 -40.82 -0.34 6.60 16 41 H 0.17 1.08 8.06 -52.49 -0.42 0.66 16 42 H 0.14 0.11 8.11 -51.93 -0.42 -0.31 16 LS Contribution 379.88 15.07 5.72 5.72 Total: -1.00 -35.73 379.88 -5.53 -41.27 By element: Atomic # 1 Polarization: 17.20 SS G_CDS: -5.08 Total: 12.12 kcal Atomic # 6 Polarization: 12.82 SS G_CDS: -1.18 Total: 11.63 kcal Atomic # 7 Polarization: -60.83 SS G_CDS: -0.22 Total: -61.05 kcal Atomic # 8 Polarization: -23.88 SS G_CDS: 0.18 Total: -23.71 kcal Atomic # 9 Polarization: -2.13 SS G_CDS: 0.08 Total: -2.06 kcal Atomic # 14 Polarization: 21.09 SS G_CDS: -5.02 Total: 16.07 kcal Total LS contribution 5.72 Total: 5.72 kcal Total: -35.73 -5.53 -41.27 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001131355424.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -46.793 kcal (2) G-P(sol) polarization free energy of solvation -35.733 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -82.526 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.535 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.268 kcal (6) G-S(sol) free energy of system = (1) + (5) -88.061 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.56 seconds