Wall clock time and date at job start Wed Apr 1 2020 03:22:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46505 * 1 3 3 N 1.28471 * 124.88609 * 2 1 4 4 C 1.31802 * 110.07361 * 179.97438 * 3 2 1 5 5 C 1.47716 * 126.51708 * 179.97438 * 4 3 2 6 6 O 1.21573 * 120.00017 * 180.02562 * 5 4 3 7 7 N 1.34777 * 119.99706 * 0.02562 * 5 4 3 8 8 C 1.46499 * 119.99665 * 179.72381 * 7 5 4 9 9 C 1.53004 * 109.47198 * 180.27868 * 8 7 5 10 10 N 1.46898 * 109.46947 * 180.02562 * 9 8 7 11 11 C 1.46904 * 110.99459 * 179.97438 * 10 9 8 12 12 C 1.50705 * 109.46807 * 179.97438 * 11 10 9 13 13 O 1.21290 * 120.00074 * 0.02562 * 12 11 10 14 14 N 1.34775 * 119.99911 * 179.97438 * 12 11 10 15 15 C 1.37094 * 120.00169 * 179.97438 * 14 12 11 16 16 H 1.07999 * 120.00091 * 0.02562 * 15 14 12 17 17 C 1.38953 * 120.00239 * 180.02562 * 15 14 12 18 18 N 1.31409 * 120.00067 * 0.02562 * 17 15 14 19 19 Si 1.86802 * 120.00103 * 180.02562 * 17 15 14 20 20 H 1.48505 * 109.46970 * 359.97438 * 19 17 15 21 21 H 1.48498 * 109.47040 * 119.99982 * 19 17 15 22 22 H 1.48497 * 109.47112 * 239.99867 * 19 17 15 23 23 C 1.41501 * 106.96561 * 0.22798 * 4 3 2 24 24 C 1.35033 * 124.88786 * 179.97438 * 2 1 3 25 25 C 1.50708 * 126.37970 * 0.03648 * 24 2 1 26 26 F 1.39898 * 109.47385 * 299.99462 * 25 24 2 27 27 F 1.39898 * 109.47144 * 59.99956 * 25 24 2 28 28 H 1.08994 * 109.46920 * 89.97538 * 1 2 3 29 29 H 1.09001 * 109.46590 * 209.98003 * 1 2 3 30 30 H 1.09006 * 109.46911 * 329.97806 * 1 2 3 31 31 H 0.97001 * 120.00485 * 0.02562 * 7 5 4 32 32 H 1.09009 * 109.47454 * 300.27637 * 8 7 5 33 33 H 1.08998 * 109.47492 * 60.27932 * 8 7 5 34 34 H 1.08995 * 109.46638 * 300.00121 * 9 8 7 35 35 H 1.09006 * 109.47139 * 60.00254 * 9 8 7 36 36 H 1.00894 * 111.00658 * 56.04933 * 10 9 8 37 37 H 1.08992 * 109.47591 * 299.99636 * 11 10 9 38 38 H 1.09001 * 109.47600 * 60.00212 * 11 10 9 39 39 H 0.97001 * 120.00445 * 0.02562 * 14 12 11 40 40 H 0.96999 * 120.00459 * 179.97438 * 18 17 15 41 41 H 1.07995 * 127.24572 * 179.75423 * 23 4 3 42 42 H 1.09000 * 109.46440 * 179.97438 * 25 24 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 7 2.1998 1.0538 0.0000 4 6 3.4741 0.7169 0.0006 5 6 4.6274 1.6399 0.0002 6 8 5.7598 1.1977 0.0003 7 7 4.4241 2.9722 -0.0002 8 6 5.5679 3.8876 0.0055 9 6 5.0647 5.3325 0.0107 10 7 6.2117 6.2504 0.0159 11 6 5.7657 7.6501 0.0204 12 6 6.9670 8.5600 0.0262 13 8 8.0847 8.0888 0.0262 14 7 6.7995 9.8973 0.0305 15 6 7.8923 10.7251 0.0364 16 1 8.8875 10.3056 0.0371 17 6 7.7195 12.1038 0.0413 18 7 6.5086 12.6143 0.0408 19 14 9.2086 13.2317 0.0486 20 1 10.4485 12.4145 0.0485 21 1 9.1828 14.0932 -1.1607 22 1 9.1780 14.0840 1.2642 23 6 3.5272 -0.6971 -0.0045 24 6 2.2374 -1.1076 0.0005 25 6 1.7534 -2.5349 0.0004 26 9 0.9786 -2.7647 1.1423 27 9 0.9797 -2.7648 -1.1423 28 1 -0.3633 0.0004 -1.0276 29 1 -0.3632 -0.8902 0.5135 30 1 -0.3633 0.8898 0.5142 31 1 3.5206 3.3251 0.0000 32 1 6.1712 3.7098 0.8959 33 1 6.1742 3.7172 -0.8841 34 1 4.4615 5.5103 -0.8795 35 1 4.4585 5.5030 0.9005 36 1 6.8237 6.0688 -0.7654 37 1 5.1673 7.8436 -0.8698 38 1 5.1644 7.8371 0.9101 39 1 5.9056 10.2741 0.0302 40 1 6.3879 13.5767 0.0447 41 1 4.4109 -1.3180 -0.0091 42 1 2.6100 -3.2089 0.0004 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001131355424.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:22:26 Heat of formation + Delta-G solvation = -117.459090 kcal Electronic energy + Delta-G solvation = -28102.927903 eV Core-core repulsion = 23368.529320 eV Total energy + Delta-G solvation = -4734.398583 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 345.140 amu Computer time = 0.57 seconds Orbital eigenvalues (eV) -50.14609 -48.13185 -43.90739 -40.60202 -40.13307 -37.50405 -36.00807 -35.30021 -34.62672 -33.27750 -33.16551 -30.77387 -28.75144 -27.68690 -26.99806 -25.70518 -24.21926 -23.01403 -22.46638 -21.10615 -21.02593 -19.92096 -19.33384 -18.49214 -18.30303 -17.92080 -17.56084 -17.40438 -17.24760 -17.06859 -16.53673 -16.44635 -16.19092 -15.89275 -15.31581 -15.21429 -15.04303 -14.95169 -14.85596 -14.49323 -14.38677 -14.05230 -13.86311 -13.71303 -13.53105 -13.52020 -13.32102 -12.94069 -12.80284 -12.59962 -12.43744 -12.39450 -12.11115 -12.00613 -11.51300 -11.46189 -10.64614 -10.39211 -10.36276 -10.12411 -10.01232 -9.38993 -8.46774 -5.95344 0.29355 0.66258 1.23384 1.37067 1.42637 1.56758 1.88118 2.05433 2.20315 2.30148 2.43525 2.96870 3.06230 3.12376 3.20735 3.52837 3.60140 3.81908 3.87233 3.95978 4.10831 4.21649 4.23653 4.28281 4.32114 4.45752 4.48291 4.51000 4.53321 4.61427 4.87908 4.92397 5.07419 5.24593 5.41692 5.43322 5.83764 6.06736 6.29057 6.32876 6.60317 6.63180 7.04306 7.13059 7.56432 8.12021 8.70770 Molecular weight = 345.14amu Principal moments of inertia in cm(-1) A = 0.038169 B = 0.001340 C = 0.001306 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 733.411002 B =20896.014605 C =21431.656642 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.067 3.933 2 N -0.256 5.256 3 N -0.245 5.245 4 C -0.043 4.043 5 C 0.603 3.397 6 O -0.566 6.566 7 N -0.702 5.702 8 C 0.127 3.873 9 C 0.058 3.942 10 N -0.684 5.684 11 C 0.068 3.932 12 C 0.436 3.564 13 O -0.624 6.624 14 N -0.572 5.572 15 C -0.335 4.335 16 H 0.078 0.922 17 C -0.012 4.012 18 N -0.919 5.919 19 Si 0.993 3.007 20 H -0.274 1.274 21 H -0.270 1.270 22 H -0.271 1.271 23 C -0.138 4.138 24 C -0.074 4.074 25 C 0.351 3.649 26 F -0.200 7.200 27 F -0.200 7.200 28 H 0.107 0.893 29 H 0.110 0.890 30 H 0.117 0.883 31 H 0.417 0.583 32 H 0.066 0.934 33 H 0.064 0.936 34 H 0.056 0.944 35 H 0.092 0.908 36 H 0.347 0.653 37 H 0.073 0.927 38 H 0.109 0.891 39 H 0.397 0.603 40 H 0.278 0.722 41 H 0.187 0.813 42 H 0.183 0.817 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -20.139 -30.340 -1.072 36.431 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.071 4.071 2 N -0.045 5.045 3 N -0.084 5.084 4 C -0.200 4.200 5 C 0.388 3.612 6 O -0.443 6.443 7 N -0.354 5.354 8 C 0.003 3.997 9 C -0.071 4.071 10 N -0.317 5.317 11 C -0.065 4.065 12 C 0.223 3.777 13 O -0.511 6.511 14 N -0.210 5.210 15 C -0.465 4.465 16 H 0.096 0.904 17 C -0.211 4.211 18 N -0.560 5.560 19 Si 0.816 3.184 20 H -0.199 1.199 21 H -0.195 1.195 22 H -0.196 1.196 23 C -0.166 4.166 24 C -0.199 4.199 25 C 0.297 3.703 26 F -0.182 7.182 27 F -0.182 7.182 28 H 0.125 0.875 29 H 0.129 0.871 30 H 0.135 0.865 31 H 0.254 0.746 32 H 0.084 0.916 33 H 0.083 0.917 34 H 0.074 0.926 35 H 0.110 0.890 36 H 0.166 0.834 37 H 0.091 0.909 38 H 0.127 0.873 39 H 0.231 0.769 40 H 0.087 0.913 41 H 0.204 0.796 42 H 0.199 0.801 Dipole moment (debyes) X Y Z Total from point charges -19.469 -29.845 -0.393 35.636 hybrid contribution -0.023 0.688 -0.861 1.102 sum -19.492 -29.157 -1.254 35.094 Atomic orbital electron populations 1.22749 0.70312 1.07450 1.06579 1.45747 1.09274 1.01807 1.47697 1.73521 1.02794 1.14319 1.17741 1.21781 0.90704 0.94516 1.12967 1.16992 0.86421 0.81876 0.75868 1.90811 1.23896 1.77689 1.51885 1.45595 1.11160 1.04859 1.73777 1.21161 0.87993 0.87914 1.02594 1.22054 0.92392 0.89802 1.02827 1.59903 1.18154 1.01822 1.51802 1.21530 0.93880 0.87461 1.03600 1.20915 0.91388 0.83139 0.82230 1.90503 1.27928 1.76021 1.56633 1.41919 1.09276 1.04751 1.65024 1.19713 0.88523 0.88307 1.49921 0.90394 1.26021 1.00743 0.98149 0.96237 1.69668 1.22115 1.13909 1.50347 0.84875 0.77529 0.77620 0.78331 1.19896 1.19541 1.19616 1.21831 0.97091 0.93416 1.04254 1.22171 0.92003 0.91651 1.14078 1.20226 0.89162 0.90124 0.70833 1.93031 1.78343 1.95256 1.51536 1.93043 1.78407 1.95284 1.51421 0.87488 0.87113 0.86465 0.74599 0.91562 0.91722 0.92608 0.88963 0.83416 0.90939 0.87338 0.76865 0.91286 0.79565 0.80051 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.07 0.35 11.04 127.77 1.41 1.76 16 2 N -0.26 -3.33 3.70 -355.91 -1.32 -4.64 16 3 N -0.24 -4.28 11.67 -48.17 -0.56 -4.84 16 4 C -0.04 -0.86 7.13 42.46 0.30 -0.56 16 5 C 0.60 14.78 7.83 86.75 0.68 15.45 16 6 O -0.57 -17.76 16.93 -3.95 -0.07 -17.83 16 7 N -0.70 -14.30 5.55 -466.08 -2.59 -16.89 16 8 C 0.13 2.92 5.93 86.38 0.51 3.43 16 9 C 0.06 1.24 5.80 86.30 0.50 1.74 16 10 N -0.68 -20.96 6.13 -517.92 -3.17 -24.14 16 11 C 0.07 2.22 6.17 85.56 0.53 2.75 16 12 C 0.44 20.67 7.82 87.66 0.69 21.35 16 13 O -0.62 -34.95 15.78 -3.06 -0.05 -35.00 16 14 N -0.57 -29.27 5.29 -306.98 -1.62 -30.90 16 15 C -0.34 -19.13 9.68 84.04 0.81 -18.32 16 16 H 0.08 4.77 7.16 -2.91 -0.02 4.75 16 17 C -0.01 -0.62 5.50 84.93 0.47 -0.16 16 18 N -0.92 -49.40 13.05 21.66 0.28 -49.11 16 19 Si 0.99 43.07 29.55 68.60 2.03 45.10 16 20 H -0.27 -12.10 7.11 99.48 0.71 -11.39 16 21 H -0.27 -11.18 7.11 99.48 0.71 -10.47 16 22 H -0.27 -11.25 7.11 99.48 0.71 -10.55 16 23 C -0.14 -2.13 10.71 22.41 0.24 -1.89 16 24 C -0.07 -0.88 6.35 41.40 0.26 -0.61 16 25 C 0.35 2.14 5.27 71.24 0.38 2.52 16 26 F -0.20 -1.75 16.30 44.97 0.73 -1.02 16 27 F -0.20 -1.77 17.25 44.97 0.78 -1.00 16 28 H 0.11 0.29 8.14 -2.39 -0.02 0.27 16 29 H 0.11 0.33 6.83 -2.39 -0.02 0.32 16 30 H 0.12 0.34 8.14 -2.38 -0.02 0.32 16 31 H 0.42 6.60 8.20 -92.71 -0.76 5.84 16 32 H 0.07 1.77 8.14 -2.38 -0.02 1.75 16 33 H 0.06 1.59 8.14 -2.39 -0.02 1.57 16 34 H 0.06 0.99 8.14 -2.39 -0.02 0.97 16 35 H 0.09 1.75 8.14 -2.38 -0.02 1.73 16 36 H 0.35 11.28 8.43 -89.70 -0.76 10.52 16 37 H 0.07 2.03 8.14 -2.39 -0.02 2.01 16 38 H 0.11 3.16 8.14 -2.39 -0.02 3.14 16 39 H 0.40 19.11 7.90 -92.71 -0.73 18.38 16 40 H 0.28 13.91 8.31 -92.71 -0.77 13.14 16 41 H 0.19 2.18 8.06 -2.91 -0.02 2.16 16 42 H 0.18 -0.28 8.11 -2.39 -0.02 -0.30 16 Total: -1.00 -78.72 379.88 0.09 -78.63 By element: Atomic # 1 Polarization: 35.29 SS G_CDS: -1.13 Total: 34.16 kcal Atomic # 6 Polarization: 20.69 SS G_CDS: 6.78 Total: 27.47 kcal Atomic # 7 Polarization: -121.54 SS G_CDS: -8.98 Total: -130.52 kcal Atomic # 8 Polarization: -52.71 SS G_CDS: -0.12 Total: -52.83 kcal Atomic # 9 Polarization: -3.52 SS G_CDS: 1.51 Total: -2.01 kcal Atomic # 14 Polarization: 43.07 SS G_CDS: 2.03 Total: 45.10 kcal Total: -78.72 0.09 -78.63 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001131355424.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -38.827 kcal (2) G-P(sol) polarization free energy of solvation -78.718 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -117.545 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.086 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -78.632 kcal (6) G-S(sol) free energy of system = (1) + (5) -117.459 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.57 seconds