Wall clock time and date at job start Wed Apr 1 2020 03:03:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45198 * 1 3 3 C 1.34217 * 117.00638 * 2 1 4 4 O 1.20838 * 119.99839 * 359.97438 * 3 2 1 5 5 C 1.50699 * 120.00689 * 179.97438 * 3 2 1 6 6 H 1.09003 * 108.88813 * 336.78094 * 5 3 2 7 7 C 1.53333 * 109.01677 * 217.95764 * 5 3 2 8 8 C 1.55217 * 108.72932 * 209.69977 * 7 5 3 9 9 S 1.84030 * 101.28547 * 41.37370 * 8 7 5 10 10 O 1.42101 * 109.65508 * 211.72723 * 9 8 7 11 11 O 1.42096 * 109.65564 * 77.64757 * 9 8 7 12 12 C 1.52426 * 109.01670 * 95.60377 * 5 3 2 13 13 C 1.52235 * 117.01221 * 352.31490 * 12 5 3 14 14 N 1.47723 * 87.57818 * 217.06222 * 13 12 5 15 15 C 1.46896 * 111.00558 * 137.73164 * 14 13 12 16 16 H 1.09008 * 109.47066 * 56.33338 * 15 14 13 17 17 C 1.53007 * 109.46952 * 296.33814 * 15 14 13 18 18 C 1.52991 * 109.47498 * 176.33495 * 15 14 13 19 19 C 1.53001 * 109.46981 * 294.99666 * 18 15 14 20 20 C 1.50701 * 109.47193 * 179.97438 * 19 18 15 21 21 H 1.08005 * 119.99847 * 0.02562 * 20 19 18 22 22 C 1.37870 * 120.00335 * 180.02562 * 20 19 18 23 23 N 1.31517 * 120.00222 * 359.97438 * 22 20 19 24 24 Si 1.86803 * 120.00283 * 180.02562 * 22 20 19 25 25 H 1.48505 * 109.47211 * 89.99858 * 24 22 20 26 26 H 1.48498 * 109.47237 * 209.99825 * 24 22 20 27 27 H 1.48496 * 109.46900 * 329.99816 * 24 22 20 28 28 C 1.47724 * 88.16222 * 25.90629 * 14 13 12 29 29 H 1.09007 * 109.47129 * 180.02562 * 1 2 3 30 30 H 1.08995 * 109.47284 * 300.00455 * 1 2 3 31 31 H 1.08998 * 109.46968 * 60.00203 * 1 2 3 32 32 H 1.09001 * 109.64448 * 89.83644 * 7 5 3 33 33 H 1.09006 * 109.52834 * 329.48851 * 7 5 3 34 34 H 1.09001 * 111.05670 * 283.37656 * 8 7 5 35 35 H 1.09000 * 111.09804 * 159.39452 * 8 7 5 36 36 H 1.08997 * 113.53475 * 102.38303 * 13 12 5 37 37 H 1.09005 * 113.53671 * 331.73656 * 13 12 5 38 38 H 1.08997 * 109.46918 * 47.90404 * 17 15 14 39 39 H 1.08998 * 109.46774 * 167.90816 * 17 15 14 40 40 H 1.09005 * 109.46517 * 287.90730 * 17 15 14 41 41 H 1.08997 * 109.47238 * 54.99951 * 18 15 14 42 42 H 1.09009 * 109.47256 * 175.00156 * 18 15 14 43 43 H 1.08997 * 109.47368 * 300.00206 * 19 18 15 44 44 H 1.09003 * 109.46935 * 60.00559 * 19 18 15 45 45 H 0.96992 * 120.00583 * 179.97438 * 23 22 20 46 46 H 1.08997 * 113.53254 * 88.77139 * 28 14 13 47 47 H 1.08994 * 113.53574 * 219.42522 * 28 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4520 0.0000 0.0000 3 6 2.0614 1.1958 0.0000 4 8 1.4034 2.2093 -0.0005 5 6 3.5664 1.2747 0.0006 6 1 3.9682 0.3468 0.4075 7 6 4.0051 2.4425 0.8922 8 6 5.3473 3.0048 0.3523 9 16 5.0476 2.9713 -1.4632 10 8 6.2714 2.7344 -2.1454 11 8 4.2232 4.0683 -1.8318 12 6 4.0556 1.4409 -1.4334 13 6 3.0159 1.3122 -2.5380 14 7 4.0513 0.6384 -3.3480 15 6 3.4940 -0.5225 -4.0549 16 1 2.6495 -0.2045 -4.6665 17 6 3.0230 -1.5622 -3.0360 18 6 4.5698 -1.1382 -4.9517 19 6 4.9514 -0.1416 -6.0482 20 6 6.0116 -0.7478 -6.9312 21 1 6.3763 -1.7444 -6.7306 22 6 6.5158 -0.0303 -7.9950 23 7 6.0713 1.1831 -8.2395 24 14 7.8294 -0.7820 -9.0899 25 1 7.1823 -1.5118 -10.2097 26 1 8.6948 0.2945 -9.6353 27 1 8.6553 -1.7262 -8.2953 28 6 4.7028 0.2279 -2.0874 29 1 -0.3634 -1.0277 0.0005 30 1 -0.3633 0.5139 0.8899 31 1 -0.3633 0.5138 -0.8900 32 1 4.1399 2.0918 1.9154 33 1 3.2451 3.2236 0.8697 34 1 6.1808 2.3569 0.6236 35 1 5.5154 4.0231 0.7028 36 1 2.6966 2.2699 -2.9489 37 1 2.1793 0.6647 -2.2750 38 1 2.4232 -1.0729 -2.2685 39 1 2.4214 -2.3184 -3.5403 40 1 3.8890 -2.0357 -2.5734 41 1 5.4497 -1.3749 -4.3536 42 1 4.1844 -2.0502 -5.4078 43 1 4.0715 0.0951 -6.6463 44 1 5.3369 0.7703 -5.5921 45 1 6.4263 1.6881 -8.9877 46 1 4.3380 -0.7227 -1.6984 47 1 5.7909 0.2812 -2.1224 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001172497399.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:03:04 Heat of formation + Delta-G solvation = -104.524239 kcal Electronic energy + Delta-G solvation = -30515.459860 eV Core-core repulsion = 26406.710153 eV Total energy + Delta-G solvation = -4108.749707 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 345.149 amu Computer time = 0.72 seconds Orbital eigenvalues (eV) -41.75465 -40.21412 -37.37506 -36.97044 -36.08264 -35.81454 -34.23965 -32.47165 -30.05042 -29.28068 -27.94477 -26.72466 -26.11402 -25.04643 -23.26634 -22.45804 -20.90833 -20.36291 -19.26200 -18.49172 -18.14209 -17.37524 -17.06614 -16.72502 -16.53003 -16.07805 -15.99833 -15.41064 -14.74844 -14.61896 -14.27555 -14.20333 -14.03363 -13.67827 -13.52039 -13.43066 -12.84624 -12.80084 -12.55379 -12.45604 -12.32231 -12.15447 -12.01133 -11.90884 -11.77453 -11.66915 -11.31488 -11.21452 -11.16335 -10.98380 -10.81774 -10.69827 -10.67303 -10.42368 -10.30067 -10.16113 -9.65975 -9.26651 -8.88492 -8.55797 -8.16171 -5.82892 -3.84723 -0.09849 1.72041 2.16820 2.45116 3.33745 3.41101 3.42312 3.47285 3.50473 3.84121 3.90194 4.03307 4.29809 4.34869 4.40913 4.58336 4.64598 4.74903 4.80954 4.83699 4.89449 5.07584 5.08872 5.16440 5.19166 5.25333 5.28546 5.42646 5.45735 5.50102 5.52629 5.61883 5.71665 5.83889 5.96057 6.12298 6.24296 6.42117 6.59177 6.90936 7.14294 7.31173 7.32878 7.87587 8.09433 8.25960 8.60397 9.23718 9.77821 11.28312 Molecular weight = 345.15amu Principal moments of inertia in cm(-1) A = 0.014176 B = 0.003588 C = 0.003081 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1974.633863 B = 7802.440074 C = 9086.713930 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.033 3.967 2 O -0.355 6.355 3 C 0.471 3.529 4 O -0.491 6.491 5 C -0.060 4.060 6 H 0.125 0.875 7 C -0.117 4.117 8 C -0.586 4.586 9 S 2.421 3.579 10 O -0.901 6.901 11 O -0.915 6.915 12 C -0.569 4.569 13 C 0.031 3.969 14 N -0.445 5.445 15 C 0.045 3.955 16 H 0.083 0.917 17 C -0.186 4.186 18 C -0.096 4.096 19 C 0.025 3.975 20 C -0.519 4.519 21 H 0.051 0.949 22 C 0.057 3.943 23 N -0.893 5.893 24 Si 0.888 3.112 25 H -0.283 1.283 26 H -0.287 1.287 27 H -0.275 1.275 28 C 0.035 3.965 29 H 0.103 0.897 30 H 0.064 0.936 31 H 0.066 0.934 32 H 0.104 0.896 33 H 0.105 0.895 34 H 0.142 0.858 35 H 0.141 0.859 36 H 0.105 0.895 37 H 0.086 0.914 38 H 0.056 0.944 39 H 0.063 0.937 40 H 0.063 0.937 41 H 0.050 0.950 42 H 0.050 0.950 43 H 0.009 0.991 44 H 0.034 0.966 45 H 0.259 0.741 46 H 0.104 0.896 47 H 0.111 0.889 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.879 -1.701 25.003 26.587 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.061 4.061 2 O -0.271 6.271 3 C 0.313 3.687 4 O -0.377 6.377 5 C -0.081 4.081 6 H 0.143 0.857 7 C -0.155 4.155 8 C -0.715 4.715 9 S 2.598 3.402 10 O -0.898 6.898 11 O -0.912 6.912 12 C -0.657 4.657 13 C -0.099 4.099 14 N -0.167 5.167 15 C -0.063 4.063 16 H 0.101 0.899 17 C -0.244 4.244 18 C -0.133 4.133 19 C -0.012 4.012 20 C -0.558 4.558 21 H 0.069 0.931 22 C -0.144 4.144 23 N -0.532 5.532 24 Si 0.716 3.284 25 H -0.209 1.209 26 H -0.213 1.213 27 H -0.200 1.200 28 C -0.094 4.094 29 H 0.122 0.878 30 H 0.083 0.917 31 H 0.085 0.915 32 H 0.122 0.878 33 H 0.123 0.877 34 H 0.160 0.840 35 H 0.159 0.841 36 H 0.123 0.877 37 H 0.104 0.896 38 H 0.075 0.925 39 H 0.082 0.918 40 H 0.082 0.918 41 H 0.068 0.932 42 H 0.069 0.931 43 H 0.027 0.973 44 H 0.052 0.948 45 H 0.068 0.932 46 H 0.122 0.878 47 H 0.129 0.871 Dipole moment (debyes) X Y Z Total from point charges -8.463 -0.324 23.564 25.039 hybrid contribution -0.335 -1.425 0.594 1.579 sum -8.798 -1.748 24.158 25.769 Atomic orbital electron populations 1.23341 0.75876 1.04001 1.02867 1.86525 1.23746 1.32973 1.83883 1.23227 0.91336 0.81796 0.72366 1.90718 1.66659 1.36089 1.44264 1.20877 0.89325 1.03866 0.93993 0.85678 1.22110 0.95487 0.97235 1.00689 1.30685 1.04531 1.10512 1.25747 1.08636 0.76453 0.76601 0.78481 1.93674 1.41406 1.84766 1.69957 1.93635 1.69172 1.47610 1.80779 1.31288 1.14302 1.21980 0.98100 1.23511 0.93914 1.02682 0.89760 1.69462 1.14373 1.20430 1.12459 1.22355 0.99157 0.89341 0.95488 0.89872 1.22572 1.01432 1.00403 1.00026 1.21608 0.95315 0.99155 0.97272 1.19053 0.95878 0.94704 0.91602 1.21281 1.21646 1.00963 1.11894 0.93083 1.24999 0.96806 0.94873 0.97706 1.69975 1.43221 1.10460 1.29541 0.86673 0.82041 0.78810 0.80888 1.20917 1.21300 1.20007 1.23701 1.02364 0.93771 0.89538 0.87850 0.91711 0.91517 0.87763 0.87692 0.83988 0.84051 0.87721 0.89600 0.92525 0.91825 0.91795 0.93170 0.93084 0.97270 0.94775 0.93170 0.87840 0.87130 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.22 10.56 101.05 1.07 1.29 16 2 O -0.35 -3.16 10.06 -39.22 -0.39 -3.56 16 3 C 0.47 4.76 4.84 36.00 0.17 4.93 16 4 O -0.49 -6.22 15.57 -18.76 -0.29 -6.51 16 5 C -0.06 -0.49 2.92 -91.89 -0.27 -0.76 16 6 H 0.13 0.67 7.93 -51.93 -0.41 0.26 16 7 C -0.12 -0.80 5.83 -25.38 -0.15 -0.95 16 8 C -0.59 -4.15 7.47 38.33 0.29 -3.86 16 9 S 2.42 31.75 5.73 -107.50 -0.62 31.13 16 10 O -0.90 -15.43 17.20 -57.67 -0.99 -16.42 16 11 O -0.91 -15.09 17.72 -57.67 -1.02 -16.11 16 12 C -0.57 -6.58 1.38 -91.70 -0.13 -6.71 16 13 C 0.03 0.42 5.98 -6.78 -0.04 0.38 16 14 N -0.45 -7.36 5.79 -236.71 -1.37 -8.73 16 15 C 0.05 0.74 2.40 -67.72 -0.16 0.58 16 16 H 0.08 1.42 8.14 -51.92 -0.42 1.00 16 17 C -0.19 -2.26 7.70 37.16 0.29 -1.98 16 18 C -0.10 -1.96 4.74 -26.74 -0.13 -2.09 16 19 C 0.02 0.66 4.86 -27.88 -0.14 0.53 16 20 C -0.52 -15.26 9.11 -34.44 -0.31 -15.58 16 21 H 0.05 1.45 7.74 -52.48 -0.41 1.04 16 22 C 0.06 1.71 5.46 -17.82 -0.10 1.61 16 23 N -0.89 -28.16 13.29 55.43 0.74 -27.43 16 24 Si 0.89 22.50 29.54 -169.99 -5.02 17.48 16 25 H -0.28 -7.02 7.11 56.52 0.40 -6.62 16 26 H -0.29 -7.23 7.11 56.52 0.40 -6.83 16 27 H -0.28 -6.80 7.11 56.52 0.40 -6.40 16 28 C 0.04 0.45 6.36 -6.77 -0.04 0.40 16 29 H 0.10 0.45 8.14 -51.92 -0.42 0.02 16 30 H 0.06 0.40 8.13 -51.93 -0.42 -0.02 16 31 H 0.07 0.49 8.13 -51.93 -0.42 0.07 16 32 H 0.10 0.42 8.14 -51.93 -0.42 0.00 16 33 H 0.10 0.85 6.93 -51.93 -0.36 0.49 16 34 H 0.14 0.67 8.14 -51.93 -0.42 0.24 16 35 H 0.14 0.77 8.14 -51.93 -0.42 0.35 16 36 H 0.10 1.58 7.76 -51.93 -0.40 1.18 16 37 H 0.09 1.04 4.45 -51.93 -0.23 0.81 16 38 H 0.06 0.61 5.67 -51.93 -0.29 0.31 16 39 H 0.06 0.73 8.14 -51.93 -0.42 0.31 16 40 H 0.06 0.73 6.64 -51.93 -0.34 0.38 16 41 H 0.05 1.01 8.08 -51.93 -0.42 0.59 16 42 H 0.05 1.01 8.14 -51.92 -0.42 0.59 16 43 H 0.01 0.26 8.14 -51.93 -0.42 -0.17 16 44 H 0.03 1.00 7.75 -51.93 -0.40 0.60 16 45 H 0.26 7.71 8.31 -40.82 -0.34 7.37 16 46 H 0.10 1.05 4.83 -51.93 -0.25 0.80 16 47 H 0.11 1.44 7.50 -51.93 -0.39 1.05 16 LS Contribution 380.81 15.07 5.74 5.74 Total: -1.00 -39.04 380.81 -10.16 -49.20 By element: Atomic # 1 Polarization: 4.69 SS G_CDS: -7.28 Total: -2.58 kcal Atomic # 6 Polarization: -22.55 SS G_CDS: 0.35 Total: -22.19 kcal Atomic # 7 Polarization: -35.52 SS G_CDS: -0.63 Total: -36.16 kcal Atomic # 8 Polarization: -39.91 SS G_CDS: -2.70 Total: -42.61 kcal Atomic # 14 Polarization: 22.50 SS G_CDS: -5.02 Total: 17.48 kcal Atomic # 16 Polarization: 31.75 SS G_CDS: -0.62 Total: 31.13 kcal Total LS contribution 5.74 Total: 5.74 kcal Total: -39.04 -10.16 -49.20 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001172497399.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -55.328 kcal (2) G-P(sol) polarization free energy of solvation -39.041 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -94.369 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.155 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -49.197 kcal (6) G-S(sol) free energy of system = (1) + (5) -104.524 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.72 seconds