Wall clock time and date at job start Wed Apr 1 2020 03:03:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45198 * 1 3 3 C 1.34217 * 117.00638 * 2 1 4 4 O 1.20838 * 119.99839 * 359.97438 * 3 2 1 5 5 C 1.50699 * 120.00689 * 179.97438 * 3 2 1 6 6 H 1.09003 * 108.88813 * 336.78094 * 5 3 2 7 7 C 1.53333 * 109.01677 * 217.95764 * 5 3 2 8 8 C 1.55217 * 108.72932 * 209.69977 * 7 5 3 9 9 S 1.84030 * 101.28547 * 41.37370 * 8 7 5 10 10 O 1.42101 * 109.65508 * 211.72723 * 9 8 7 11 11 O 1.42096 * 109.65564 * 77.64757 * 9 8 7 12 12 C 1.52426 * 109.01670 * 95.60377 * 5 3 2 13 13 C 1.52235 * 117.01221 * 352.31490 * 12 5 3 14 14 N 1.47723 * 87.57818 * 217.06222 * 13 12 5 15 15 C 1.46896 * 111.00558 * 137.73164 * 14 13 12 16 16 H 1.09008 * 109.47066 * 56.33338 * 15 14 13 17 17 C 1.53007 * 109.46952 * 296.33814 * 15 14 13 18 18 C 1.52991 * 109.47498 * 176.33495 * 15 14 13 19 19 C 1.53001 * 109.46981 * 294.99666 * 18 15 14 20 20 C 1.50701 * 109.47193 * 179.97438 * 19 18 15 21 21 H 1.08005 * 119.99847 * 0.02562 * 20 19 18 22 22 C 1.37870 * 120.00335 * 180.02562 * 20 19 18 23 23 N 1.31517 * 120.00222 * 359.97438 * 22 20 19 24 24 Si 1.86803 * 120.00283 * 180.02562 * 22 20 19 25 25 H 1.48505 * 109.47211 * 89.99858 * 24 22 20 26 26 H 1.48498 * 109.47237 * 209.99825 * 24 22 20 27 27 H 1.48496 * 109.46900 * 329.99816 * 24 22 20 28 28 C 1.47724 * 88.16222 * 25.90629 * 14 13 12 29 29 H 1.09007 * 109.47129 * 180.02562 * 1 2 3 30 30 H 1.08995 * 109.47284 * 300.00455 * 1 2 3 31 31 H 1.08998 * 109.46968 * 60.00203 * 1 2 3 32 32 H 1.09001 * 109.64448 * 89.83644 * 7 5 3 33 33 H 1.09006 * 109.52834 * 329.48851 * 7 5 3 34 34 H 1.09001 * 111.05670 * 283.37656 * 8 7 5 35 35 H 1.09000 * 111.09804 * 159.39452 * 8 7 5 36 36 H 1.08997 * 113.53475 * 102.38303 * 13 12 5 37 37 H 1.09005 * 113.53671 * 331.73656 * 13 12 5 38 38 H 1.08997 * 109.46918 * 47.90404 * 17 15 14 39 39 H 1.08998 * 109.46774 * 167.90816 * 17 15 14 40 40 H 1.09005 * 109.46517 * 287.90730 * 17 15 14 41 41 H 1.08997 * 109.47238 * 54.99951 * 18 15 14 42 42 H 1.09009 * 109.47256 * 175.00156 * 18 15 14 43 43 H 1.08997 * 109.47368 * 300.00206 * 19 18 15 44 44 H 1.09003 * 109.46935 * 60.00559 * 19 18 15 45 45 H 0.96992 * 120.00583 * 179.97438 * 23 22 20 46 46 H 1.08997 * 113.53254 * 88.77139 * 28 14 13 47 47 H 1.08994 * 113.53574 * 219.42522 * 28 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4520 0.0000 0.0000 3 6 2.0614 1.1958 0.0000 4 8 1.4034 2.2093 -0.0005 5 6 3.5664 1.2747 0.0006 6 1 3.9682 0.3468 0.4075 7 6 4.0051 2.4425 0.8922 8 6 5.3473 3.0048 0.3523 9 16 5.0476 2.9713 -1.4632 10 8 6.2714 2.7344 -2.1454 11 8 4.2232 4.0683 -1.8318 12 6 4.0556 1.4409 -1.4334 13 6 3.0159 1.3122 -2.5380 14 7 4.0513 0.6384 -3.3480 15 6 3.4940 -0.5225 -4.0549 16 1 2.6495 -0.2045 -4.6665 17 6 3.0230 -1.5622 -3.0360 18 6 4.5698 -1.1382 -4.9517 19 6 4.9514 -0.1416 -6.0482 20 6 6.0116 -0.7478 -6.9312 21 1 6.3763 -1.7444 -6.7306 22 6 6.5158 -0.0303 -7.9950 23 7 6.0713 1.1831 -8.2395 24 14 7.8294 -0.7820 -9.0899 25 1 7.1823 -1.5118 -10.2097 26 1 8.6948 0.2945 -9.6353 27 1 8.6553 -1.7262 -8.2953 28 6 4.7028 0.2279 -2.0874 29 1 -0.3634 -1.0277 0.0005 30 1 -0.3633 0.5139 0.8899 31 1 -0.3633 0.5138 -0.8900 32 1 4.1399 2.0918 1.9154 33 1 3.2451 3.2236 0.8697 34 1 6.1808 2.3569 0.6236 35 1 5.5154 4.0231 0.7028 36 1 2.6966 2.2699 -2.9489 37 1 2.1793 0.6647 -2.2750 38 1 2.4232 -1.0729 -2.2685 39 1 2.4214 -2.3184 -3.5403 40 1 3.8890 -2.0357 -2.5734 41 1 5.4497 -1.3749 -4.3536 42 1 4.1844 -2.0502 -5.4078 43 1 4.0715 0.0951 -6.6463 44 1 5.3369 0.7703 -5.5921 45 1 6.4263 1.6881 -8.9877 46 1 4.3380 -0.7227 -1.6984 47 1 5.7909 0.2812 -2.1224 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001172497399.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:03:03 Heat of formation + Delta-G solvation = -136.292296 kcal Electronic energy + Delta-G solvation = -30516.837426 eV Core-core repulsion = 26406.710153 eV Total energy + Delta-G solvation = -4110.127273 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 345.149 amu Computer time = 0.75 seconds Orbital eigenvalues (eV) -42.67065 -41.12686 -38.28298 -37.89830 -37.11234 -36.88101 -35.74544 -34.33111 -31.44827 -30.42808 -28.67870 -27.64532 -27.25419 -26.79172 -24.02747 -23.69214 -22.57524 -21.23533 -20.52029 -19.49643 -18.89488 -18.44214 -18.21836 -17.88202 -17.65453 -17.35960 -16.94432 -16.54036 -16.45504 -15.80883 -15.51898 -15.01177 -14.90472 -14.64688 -14.57991 -14.31922 -14.22090 -14.10163 -13.65127 -13.46136 -13.31405 -13.26556 -13.13998 -13.06510 -13.00811 -12.89879 -12.78159 -12.44818 -12.35871 -12.20990 -12.08494 -11.83245 -11.81735 -11.59812 -11.52410 -11.45522 -11.29619 -11.13333 -10.94756 -10.51282 -9.73046 -8.14515 -6.26241 -1.02935 0.96029 1.38191 1.41495 1.45126 1.52226 1.62278 2.42584 2.43193 2.48633 2.91658 3.07686 3.18057 3.26596 3.52782 3.60353 3.75048 3.77524 3.86849 4.01488 4.12813 4.16922 4.29256 4.30025 4.33232 4.36148 4.41817 4.52708 4.61732 4.66417 4.73352 4.75505 4.81488 4.84053 4.93496 4.95657 5.06722 5.20456 5.29800 5.40552 5.42085 5.57748 5.83988 5.97804 6.04835 6.30734 6.60273 6.94363 7.42552 8.97498 Molecular weight = 345.15amu Principal moments of inertia in cm(-1) A = 0.014176 B = 0.003588 C = 0.003081 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1974.633863 B = 7802.440074 C = 9086.713930 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.025 3.975 2 O -0.352 6.352 3 C 0.471 3.529 4 O -0.524 6.524 5 C -0.058 4.058 6 H 0.172 0.828 7 C -0.118 4.118 8 C -0.532 4.532 9 S 2.372 3.628 10 O -0.963 6.963 11 O -0.972 6.972 12 C -0.548 4.548 13 C 0.030 3.970 14 N -0.498 5.498 15 C 0.049 3.951 16 H 0.063 0.937 17 C -0.174 4.174 18 C -0.083 4.083 19 C 0.031 3.969 20 C -0.541 4.541 21 H 0.061 0.939 22 C -0.007 4.007 23 N -0.937 5.937 24 Si 0.966 3.034 25 H -0.270 1.270 26 H -0.285 1.285 27 H -0.260 1.260 28 C 0.040 3.960 29 H 0.132 0.868 30 H 0.069 0.931 31 H 0.054 0.946 32 H 0.155 0.845 33 H 0.090 0.910 34 H 0.183 0.817 35 H 0.167 0.833 36 H 0.073 0.927 37 H 0.105 0.895 38 H 0.076 0.924 39 H 0.073 0.927 40 H 0.081 0.919 41 H 0.054 0.946 42 H 0.059 0.941 43 H -0.024 1.024 44 H -0.005 1.005 45 H 0.260 0.740 46 H 0.139 0.861 47 H 0.102 0.898 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.323 -4.744 28.737 30.292 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.068 4.068 2 O -0.268 6.268 3 C 0.314 3.686 4 O -0.413 6.413 5 C -0.078 4.078 6 H 0.190 0.810 7 C -0.157 4.157 8 C -0.666 4.666 9 S 2.559 3.441 10 O -0.960 6.960 11 O -0.969 6.969 12 C -0.637 4.637 13 C -0.099 4.099 14 N -0.220 5.220 15 C -0.060 4.060 16 H 0.081 0.919 17 C -0.231 4.231 18 C -0.121 4.121 19 C -0.006 4.006 20 C -0.579 4.579 21 H 0.080 0.920 22 C -0.203 4.203 23 N -0.578 5.578 24 Si 0.790 3.210 25 H -0.196 1.196 26 H -0.211 1.211 27 H -0.184 1.184 28 C -0.089 4.089 29 H 0.150 0.850 30 H 0.088 0.912 31 H 0.073 0.927 32 H 0.173 0.827 33 H 0.108 0.892 34 H 0.200 0.800 35 H 0.184 0.816 36 H 0.092 0.908 37 H 0.123 0.877 38 H 0.094 0.906 39 H 0.092 0.908 40 H 0.099 0.901 41 H 0.073 0.927 42 H 0.078 0.922 43 H -0.006 1.006 44 H 0.013 0.987 45 H 0.069 0.931 46 H 0.156 0.844 47 H 0.120 0.880 Dipole moment (debyes) X Y Z Total from point charges -7.911 -3.374 27.245 28.570 hybrid contribution -0.584 -0.443 -0.518 0.898 sum -8.495 -3.817 26.727 28.303 Atomic orbital electron populations 1.23586 0.74840 1.05821 1.02583 1.86514 1.24776 1.32121 1.83377 1.23560 0.91977 0.81648 0.71453 1.90722 1.67553 1.37273 1.45706 1.21076 0.88267 1.06822 0.91644 0.81044 1.22299 0.94261 0.96456 1.02669 1.30454 1.06538 1.13378 1.16202 1.09536 0.75495 0.76643 0.82425 1.93595 1.43055 1.85357 1.73974 1.93560 1.69911 1.49786 1.83690 1.30911 1.12563 1.20298 0.99945 1.23445 0.94656 1.01390 0.90401 1.69384 1.16171 1.21382 1.15105 1.22175 0.96932 0.90680 0.96224 0.91893 1.22439 1.02418 0.99154 0.99134 1.21395 0.97011 0.97694 0.96024 1.18892 0.93940 0.94932 0.92837 1.21792 1.22167 1.01484 1.12435 0.92040 1.26058 0.99485 0.95246 0.99555 1.70152 1.44975 1.12284 1.30392 0.85441 0.78709 0.78059 0.78773 1.19575 1.21097 1.18387 1.23831 1.01861 0.95466 0.87730 0.84980 0.91242 0.92700 0.82700 0.89169 0.79969 0.81565 0.90835 0.87699 0.90552 0.90764 0.90064 0.92714 0.92214 1.00610 0.98661 0.93090 0.84385 0.88021 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.27 10.56 113.37 1.20 1.47 16 2 O -0.35 -5.02 10.06 -51.30 -0.52 -5.54 16 3 C 0.47 8.24 4.84 71.24 0.34 8.58 16 4 O -0.52 -12.74 15.57 21.93 0.34 -12.40 16 5 C -0.06 -0.73 2.92 -11.62 -0.03 -0.76 16 6 H 0.17 0.67 7.93 -2.39 -0.02 0.65 16 7 C -0.12 -1.07 5.83 31.47 0.18 -0.89 16 8 C -0.53 -5.47 7.47 72.74 0.54 -4.93 16 9 S 2.37 64.71 5.73 -56.49 -0.32 64.39 16 10 O -0.96 -35.50 17.20 -127.53 -2.19 -37.69 16 11 O -0.97 -35.24 17.72 -127.53 -2.26 -37.50 16 12 C -0.55 -12.20 1.38 -11.48 -0.02 -12.22 16 13 C 0.03 0.87 5.98 83.94 0.50 1.37 16 14 N -0.50 -17.18 5.79 -902.82 -5.22 -22.40 16 15 C 0.05 1.62 2.40 44.92 0.11 1.73 16 16 H 0.06 2.29 8.14 -2.38 -0.02 2.27 16 17 C -0.17 -3.72 7.70 71.98 0.55 -3.17 16 18 C -0.08 -3.49 4.74 30.59 0.14 -3.35 16 19 C 0.03 1.78 4.86 29.85 0.15 1.92 16 20 C -0.54 -32.75 9.11 25.60 0.23 -32.52 16 21 H 0.06 3.50 7.74 -2.91 -0.02 3.48 16 22 C -0.01 -0.40 5.46 84.65 0.46 0.06 16 23 N -0.94 -61.92 13.29 21.45 0.28 -61.64 16 24 Si 0.97 46.95 29.54 68.60 2.03 48.97 16 25 H -0.27 -12.53 7.11 99.48 0.71 -11.83 16 26 H -0.29 -13.68 7.11 99.48 0.71 -12.97 16 27 H -0.26 -11.90 7.11 99.48 0.71 -11.19 16 28 C 0.04 0.95 6.36 83.94 0.53 1.48 16 29 H 0.13 0.67 8.14 -2.38 -0.02 0.65 16 30 H 0.07 0.71 8.13 -2.39 -0.02 0.69 16 31 H 0.05 0.74 8.13 -2.39 -0.02 0.72 16 32 H 0.16 0.08 8.14 -2.39 -0.02 0.06 16 33 H 0.09 1.20 6.93 -2.38 -0.02 1.18 16 34 H 0.18 0.61 8.14 -2.39 -0.02 0.59 16 35 H 0.17 1.11 8.14 -2.39 -0.02 1.09 16 36 H 0.07 2.52 7.76 -2.39 -0.02 2.50 16 37 H 0.11 2.50 4.45 -2.38 -0.01 2.49 16 38 H 0.08 1.36 5.67 -2.39 -0.01 1.34 16 39 H 0.07 1.48 8.14 -2.39 -0.02 1.46 16 40 H 0.08 1.50 6.64 -2.38 -0.02 1.48 16 41 H 0.05 2.21 8.08 -2.39 -0.02 2.19 16 42 H 0.06 2.36 8.14 -2.38 -0.02 2.34 16 43 H -0.02 -1.53 8.14 -2.39 -0.02 -1.55 16 44 H -0.01 -0.33 7.75 -2.39 -0.02 -0.34 16 45 H 0.26 16.17 8.31 -92.71 -0.77 15.40 16 46 H 0.14 2.26 4.83 -2.39 -0.01 2.25 16 47 H 0.10 2.62 7.50 -2.39 -0.02 2.60 16 Total: -1.00 -95.49 380.81 -1.99 -97.48 By element: Atomic # 1 Polarization: 6.58 SS G_CDS: 0.97 Total: 7.55 kcal Atomic # 6 Polarization: -46.12 SS G_CDS: 4.90 Total: -41.22 kcal Atomic # 7 Polarization: -79.10 SS G_CDS: -4.94 Total: -84.04 kcal Atomic # 8 Polarization: -88.51 SS G_CDS: -4.63 Total: -93.13 kcal Atomic # 14 Polarization: 46.95 SS G_CDS: 2.03 Total: 48.97 kcal Atomic # 16 Polarization: 64.71 SS G_CDS: -0.32 Total: 64.39 kcal Total: -95.49 -1.99 -97.48 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001172497399.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -38.816 kcal (2) G-P(sol) polarization free energy of solvation -95.486 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -134.302 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.990 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -97.476 kcal (6) G-S(sol) free energy of system = (1) + (5) -136.292 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.75 seconds