Wall clock time and date at job start Wed Apr 1 2020 03:03:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45204 * 1 3 3 C 1.34224 * 116.99882 * 2 1 4 4 O 1.20822 * 120.00520 * 0.02562 * 3 2 1 5 5 C 1.50706 * 119.99530 * 180.02562 * 3 2 1 6 6 H 1.08996 * 108.88702 * 24.53799 * 5 3 2 7 7 C 1.53341 * 109.01066 * 143.36430 * 5 3 2 8 8 C 1.55209 * 108.72819 * 150.30205 * 7 5 3 9 9 S 1.84033 * 101.28472 * 318.62257 * 8 7 5 10 10 O 1.42103 * 109.65780 * 282.35200 * 9 8 7 11 11 O 1.42107 * 109.65607 * 148.27427 * 9 8 7 12 12 C 1.52431 * 109.01195 * 265.71165 * 5 3 2 13 13 C 1.52232 * 117.01049 * 7.68067 * 12 5 3 14 14 N 1.47725 * 87.57668 * 92.59368 * 13 12 5 15 15 C 1.46904 * 110.99945 * 137.72619 * 14 13 12 16 16 H 1.09003 * 109.46893 * 300.00414 * 15 14 13 17 17 C 1.53002 * 109.47136 * 59.99712 * 15 14 13 18 18 C 1.52998 * 109.47289 * 179.97438 * 15 14 13 19 19 C 1.53009 * 109.46880 * 64.99969 * 18 15 14 20 20 C 1.50701 * 109.46794 * 179.97438 * 19 18 15 21 21 H 1.07996 * 120.00290 * 0.02562 * 20 19 18 22 22 C 1.37873 * 119.99563 * 180.02562 * 20 19 18 23 23 N 1.31511 * 120.00706 * 359.97438 * 22 20 19 24 24 Si 1.86808 * 119.99744 * 180.02562 * 22 20 19 25 25 H 1.48493 * 109.47158 * 89.99864 * 24 22 20 26 26 H 1.48503 * 109.46956 * 210.00188 * 24 22 20 27 27 H 1.48497 * 109.47022 * 329.99730 * 24 22 20 28 28 C 1.47728 * 88.16301 * 25.90716 * 14 13 12 29 29 H 1.08993 * 109.47179 * 59.99548 * 1 2 3 30 30 H 1.08999 * 109.47285 * 180.02562 * 1 2 3 31 31 H 1.09006 * 109.46539 * 300.00043 * 1 2 3 32 32 H 1.09000 * 109.64064 * 270.15619 * 7 5 3 33 33 H 1.09001 * 109.64401 * 30.57638 * 7 5 3 34 34 H 1.09002 * 111.06180 * 76.62653 * 8 7 5 35 35 H 1.09003 * 111.06158 * 200.61874 * 8 7 5 36 36 H 1.08995 * 113.53183 * 337.92039 * 13 12 5 37 37 H 1.09001 * 113.53290 * 207.27302 * 13 12 5 38 38 H 1.08999 * 109.47175 * 300.00220 * 17 15 14 39 39 H 1.08998 * 109.46734 * 60.00074 * 17 15 14 40 40 H 1.09000 * 109.47148 * 179.97438 * 17 15 14 41 41 H 1.08999 * 109.47308 * 184.99932 * 18 15 14 42 42 H 1.09000 * 109.47213 * 305.00489 * 18 15 14 43 43 H 1.08999 * 109.47119 * 300.00078 * 19 18 15 44 44 H 1.09000 * 109.46773 * 60.00250 * 19 18 15 45 45 H 0.96996 * 120.00939 * 180.02562 * 23 22 20 46 46 H 1.08998 * 113.53723 * 88.76696 * 28 14 13 47 47 H 1.08996 * 113.52960 * 219.42396 * 28 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4520 0.0000 0.0000 3 6 2.0614 1.1960 0.0000 4 8 1.4034 2.2093 0.0005 5 6 3.5664 1.2747 -0.0006 6 1 3.9676 0.3564 -0.4292 7 6 4.0040 2.4628 -0.8656 8 6 5.3469 3.0125 -0.3147 9 16 5.0494 2.9372 1.4999 10 8 4.2255 4.0256 1.8948 11 8 6.2741 2.6847 2.1750 12 6 4.0572 1.4080 1.4364 13 6 3.0187 1.2541 2.5388 14 7 3.3712 -0.1797 2.5844 15 6 3.4603 -0.6561 3.9712 16 1 4.2269 -0.0906 4.5010 17 6 2.1110 -0.4602 4.6654 18 6 3.8256 -2.1418 3.9777 19 6 5.2290 -2.3243 3.3960 20 6 5.5892 -3.7877 3.4030 21 1 4.8872 -4.5147 3.7838 22 6 6.8148 -4.1982 2.9233 23 7 7.6695 -3.3129 2.4591 24 14 7.2610 -6.0122 2.9313 25 1 6.8309 -6.6333 1.6529 26 1 8.7308 -6.1597 3.0836 27 1 6.5760 -6.6854 4.0638 28 6 4.7051 0.1803 2.0617 29 1 -0.3633 0.5139 -0.8899 30 1 -0.3634 -1.0276 0.0005 31 1 -0.3632 0.5139 0.8901 32 1 4.1376 2.1357 -1.8968 33 1 3.2459 3.2449 -0.8247 34 1 6.1801 2.3711 -0.6020 35 1 5.5139 4.0387 -0.6420 36 1 1.9982 1.4410 2.2045 37 1 3.2702 1.7935 3.4520 38 1 1.8502 0.5982 4.6608 39 1 1.3444 -1.0255 4.1356 40 1 2.1769 -0.8140 5.6943 41 1 3.8049 -2.5166 5.0010 42 1 3.1071 -2.6953 3.3733 43 1 5.2498 -1.9495 2.3727 44 1 5.9476 -1.7708 4.0004 45 1 8.5316 -3.6017 2.1213 46 1 5.4282 0.4194 2.8415 47 1 5.0914 -0.5285 1.3294 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001172497400.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:03:07 Heat of formation + Delta-G solvation = -111.549900 kcal Electronic energy + Delta-G solvation = -30770.512879 eV Core-core repulsion = 26661.458516 eV Total energy + Delta-G solvation = -4109.054362 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 345.149 amu Computer time = 0.66 seconds Orbital eigenvalues (eV) -41.50675 -39.87907 -37.28185 -36.84880 -36.13973 -35.73283 -34.22528 -32.64228 -29.92952 -29.42354 -27.73737 -26.46520 -26.07370 -24.82898 -23.16672 -22.24561 -20.96257 -20.27197 -19.41685 -18.62175 -17.90403 -17.07004 -16.94900 -16.57351 -16.46577 -16.18145 -15.80080 -15.31515 -14.53666 -14.49452 -14.36596 -14.21185 -13.97963 -13.54572 -13.40178 -13.08157 -12.81571 -12.58674 -12.45818 -12.31432 -12.22775 -12.12511 -12.07190 -12.01192 -11.72484 -11.70833 -11.30375 -11.27079 -10.94505 -10.88190 -10.80119 -10.79070 -10.55221 -10.44817 -10.30968 -10.19921 -9.62868 -9.21385 -8.99732 -8.61410 -8.29345 -5.97874 -3.98772 -0.13138 1.98408 2.29886 2.54267 3.32589 3.35872 3.39220 3.42459 3.49799 3.88429 3.97395 4.19199 4.29406 4.38434 4.47704 4.57931 4.84452 4.90008 5.03318 5.07746 5.11334 5.11527 5.24447 5.32214 5.36097 5.38443 5.42847 5.43711 5.49990 5.61760 5.69860 5.72580 5.99014 6.07045 6.14342 6.29964 6.32615 6.50197 6.56738 6.87600 7.15641 7.26072 7.63827 7.69764 7.87653 8.01993 8.46496 9.07344 9.64586 11.13221 Molecular weight = 345.15amu Principal moments of inertia in cm(-1) A = 0.011130 B = 0.004069 C = 0.003653 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2515.153745 B = 6880.443702 C = 7662.523445 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.036 3.964 2 O -0.333 6.333 3 C 0.483 3.517 4 O -0.509 6.509 5 C -0.048 4.048 6 H 0.132 0.868 7 C -0.117 4.117 8 C -0.575 4.575 9 S 2.386 3.614 10 O -0.923 6.923 11 O -0.919 6.919 12 C -0.562 4.562 13 C 0.036 3.964 14 N -0.435 5.435 15 C 0.038 3.962 16 H 0.049 0.951 17 C -0.145 4.145 18 C -0.099 4.099 19 C 0.013 3.987 20 C -0.517 4.517 21 H 0.052 0.948 22 C 0.058 3.942 23 N -0.895 5.895 24 Si 0.888 3.112 25 H -0.281 1.281 26 H -0.287 1.287 27 H -0.275 1.275 28 C 0.057 3.943 29 H 0.059 0.941 30 H 0.102 0.898 31 H 0.061 0.939 32 H 0.106 0.894 33 H 0.104 0.896 34 H 0.145 0.855 35 H 0.140 0.860 36 H 0.096 0.904 37 H 0.081 0.919 38 H 0.045 0.955 39 H 0.061 0.939 40 H 0.060 0.940 41 H 0.051 0.949 42 H 0.058 0.942 43 H 0.031 0.969 44 H 0.010 0.990 45 H 0.260 0.740 46 H 0.099 0.901 47 H 0.121 0.879 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.450 12.431 -7.251 17.786 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.058 4.058 2 O -0.247 6.247 3 C 0.326 3.674 4 O -0.398 6.398 5 C -0.068 4.068 6 H 0.150 0.850 7 C -0.156 4.156 8 C -0.705 4.705 9 S 2.568 3.432 10 O -0.920 6.920 11 O -0.916 6.916 12 C -0.652 4.652 13 C -0.093 4.093 14 N -0.159 5.159 15 C -0.071 4.071 16 H 0.067 0.933 17 C -0.203 4.203 18 C -0.136 4.136 19 C -0.024 4.024 20 C -0.555 4.555 21 H 0.071 0.929 22 C -0.143 4.143 23 N -0.534 5.534 24 Si 0.717 3.283 25 H -0.208 1.208 26 H -0.213 1.213 27 H -0.200 1.200 28 C -0.072 4.072 29 H 0.078 0.922 30 H 0.120 0.880 31 H 0.080 0.920 32 H 0.125 0.875 33 H 0.122 0.878 34 H 0.163 0.837 35 H 0.158 0.842 36 H 0.114 0.886 37 H 0.099 0.901 38 H 0.064 0.936 39 H 0.080 0.920 40 H 0.079 0.921 41 H 0.070 0.930 42 H 0.077 0.923 43 H 0.049 0.951 44 H 0.029 0.971 45 H 0.069 0.931 46 H 0.117 0.883 47 H 0.139 0.861 Dipole moment (debyes) X Y Z Total from point charges -10.649 12.790 -6.843 17.995 hybrid contribution 0.396 -0.966 -0.188 1.061 sum -10.253 11.824 -7.031 17.157 Atomic orbital electron populations 1.23271 0.76548 1.03841 1.02114 1.86638 1.22963 1.32178 1.82961 1.23007 0.91141 0.81750 0.71514 1.90680 1.66864 1.36366 1.45897 1.20600 0.89937 1.03675 0.92601 0.85037 1.22151 0.95057 0.97091 1.01263 1.30538 1.05059 1.10505 1.24355 1.09440 0.76611 0.77474 0.79694 1.93633 1.68890 1.48869 1.80570 1.93664 1.41609 1.85006 1.71282 1.30761 1.13681 1.20460 1.00250 1.23368 0.98097 0.93633 0.94246 1.69296 1.15360 1.11988 1.19214 1.22514 0.96596 0.99821 0.88185 0.93343 1.21864 0.97290 1.00737 1.00394 1.21624 1.00827 0.90694 1.00497 1.19332 0.89602 0.96759 0.96693 1.21236 1.00571 0.92981 1.40705 0.92944 1.24978 0.96544 0.97230 0.95544 1.69939 1.08012 1.33210 1.42270 0.86657 0.77467 0.85896 0.78324 1.20759 1.21328 1.20025 1.23664 0.92860 0.90555 1.00149 0.92199 0.87973 0.91974 0.87545 0.87762 0.83683 0.84170 0.88603 0.90093 0.93566 0.91957 0.92066 0.93023 0.92316 0.95127 0.97117 0.93080 0.88287 0.86139 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 0.35 10.56 101.05 1.07 1.42 16 2 O -0.33 -4.22 10.57 -39.24 -0.41 -4.63 16 3 C 0.48 6.10 4.67 36.01 0.17 6.26 16 4 O -0.51 -7.22 15.20 -18.75 -0.28 -7.50 16 5 C -0.05 -0.52 2.92 -91.88 -0.27 -0.79 16 6 H 0.13 1.29 7.77 -51.93 -0.40 0.89 16 7 C -0.12 -0.99 5.82 -25.38 -0.15 -1.14 16 8 C -0.57 -4.64 7.47 38.33 0.29 -4.35 16 9 S 2.39 29.69 5.73 -107.50 -0.62 29.08 16 10 O -0.92 -13.77 18.04 -57.66 -1.04 -14.81 16 11 O -0.92 -14.49 17.22 -57.66 -0.99 -15.48 16 12 C -0.56 -7.19 1.38 -91.69 -0.13 -7.31 16 13 C 0.04 0.50 5.21 -6.77 -0.04 0.46 16 14 N -0.44 -6.77 6.10 -236.69 -1.44 -8.22 16 15 C 0.04 0.62 1.98 -67.71 -0.13 0.48 16 16 H 0.05 0.81 7.53 -51.93 -0.39 0.42 16 17 C -0.15 -1.98 9.09 37.16 0.34 -1.65 16 18 C -0.10 -1.96 4.83 -26.73 -0.13 -2.09 16 19 C 0.01 0.32 4.17 -27.88 -0.12 0.20 16 20 C -0.52 -14.26 9.11 -34.44 -0.31 -14.58 16 21 H 0.05 1.43 7.74 -52.49 -0.41 1.02 16 22 C 0.06 1.62 5.46 -17.82 -0.10 1.53 16 23 N -0.89 -26.00 13.29 55.43 0.74 -25.26 16 24 Si 0.89 21.39 29.54 -169.99 -5.02 16.37 16 25 H -0.28 -6.68 7.11 56.52 0.40 -6.28 16 26 H -0.29 -6.88 7.11 56.52 0.40 -6.48 16 27 H -0.28 -6.54 7.11 56.52 0.40 -6.14 16 28 C 0.06 0.88 4.68 -6.76 -0.03 0.85 16 29 H 0.06 0.52 8.13 -51.93 -0.42 0.09 16 30 H 0.10 0.78 8.14 -51.93 -0.42 0.36 16 31 H 0.06 0.60 8.13 -51.93 -0.42 0.18 16 32 H 0.11 0.65 8.14 -51.93 -0.42 0.22 16 33 H 0.10 0.96 6.91 -51.93 -0.36 0.60 16 34 H 0.14 0.95 8.14 -51.93 -0.42 0.52 16 35 H 0.14 0.83 8.14 -51.93 -0.42 0.41 16 36 H 0.10 1.31 6.01 -51.93 -0.31 1.00 16 37 H 0.08 1.05 7.62 -51.93 -0.40 0.65 16 38 H 0.05 0.57 7.01 -51.93 -0.36 0.20 16 39 H 0.06 0.85 8.14 -51.93 -0.42 0.42 16 40 H 0.06 0.78 8.14 -51.93 -0.42 0.36 16 41 H 0.05 1.02 8.14 -51.93 -0.42 0.59 16 42 H 0.06 1.19 8.14 -51.93 -0.42 0.77 16 43 H 0.03 0.75 5.10 -51.93 -0.26 0.49 16 44 H 0.01 0.28 8.14 -51.93 -0.42 -0.15 16 45 H 0.26 7.17 8.31 -40.82 -0.34 6.83 16 46 H 0.10 1.66 6.90 -51.93 -0.36 1.30 16 47 H 0.12 1.98 6.62 -51.93 -0.34 1.63 16 LS Contribution 381.42 15.07 5.75 5.75 Total: -1.00 -35.22 381.42 -10.25 -45.48 By element: Atomic # 1 Polarization: 7.32 SS G_CDS: -7.38 Total: -0.06 kcal Atomic # 6 Polarization: -21.16 SS G_CDS: 0.46 Total: -20.70 kcal Atomic # 7 Polarization: -32.77 SS G_CDS: -0.71 Total: -33.48 kcal Atomic # 8 Polarization: -39.70 SS G_CDS: -2.73 Total: -42.43 kcal Atomic # 14 Polarization: 21.39 SS G_CDS: -5.02 Total: 16.37 kcal Atomic # 16 Polarization: 29.69 SS G_CDS: -0.62 Total: 29.08 kcal Total LS contribution 5.75 Total: 5.75 kcal Total: -35.22 -10.25 -45.48 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001172497400.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -66.071 kcal (2) G-P(sol) polarization free energy of solvation -35.224 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -101.295 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.255 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.479 kcal (6) G-S(sol) free energy of system = (1) + (5) -111.550 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.66 seconds