Wall clock time and date at job start Wed Apr 1 2020 03:03:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45204 * 1 3 3 C 1.34224 * 116.99882 * 2 1 4 4 O 1.20822 * 120.00520 * 0.02562 * 3 2 1 5 5 C 1.50706 * 119.99530 * 180.02562 * 3 2 1 6 6 H 1.08996 * 108.88702 * 24.53799 * 5 3 2 7 7 C 1.53341 * 109.01066 * 143.36430 * 5 3 2 8 8 C 1.55209 * 108.72819 * 150.30205 * 7 5 3 9 9 S 1.84033 * 101.28472 * 318.62257 * 8 7 5 10 10 O 1.42103 * 109.65780 * 282.35200 * 9 8 7 11 11 O 1.42107 * 109.65607 * 148.27427 * 9 8 7 12 12 C 1.52431 * 109.01195 * 265.71165 * 5 3 2 13 13 C 1.52232 * 117.01049 * 7.68067 * 12 5 3 14 14 N 1.47725 * 87.57668 * 92.59368 * 13 12 5 15 15 C 1.46904 * 110.99945 * 137.72619 * 14 13 12 16 16 H 1.09003 * 109.46893 * 300.00414 * 15 14 13 17 17 C 1.53002 * 109.47136 * 59.99712 * 15 14 13 18 18 C 1.52998 * 109.47289 * 179.97438 * 15 14 13 19 19 C 1.53009 * 109.46880 * 64.99969 * 18 15 14 20 20 C 1.50701 * 109.46794 * 179.97438 * 19 18 15 21 21 H 1.07996 * 120.00290 * 0.02562 * 20 19 18 22 22 C 1.37873 * 119.99563 * 180.02562 * 20 19 18 23 23 N 1.31511 * 120.00706 * 359.97438 * 22 20 19 24 24 Si 1.86808 * 119.99744 * 180.02562 * 22 20 19 25 25 H 1.48493 * 109.47158 * 89.99864 * 24 22 20 26 26 H 1.48503 * 109.46956 * 210.00188 * 24 22 20 27 27 H 1.48497 * 109.47022 * 329.99730 * 24 22 20 28 28 C 1.47728 * 88.16301 * 25.90716 * 14 13 12 29 29 H 1.08993 * 109.47179 * 59.99548 * 1 2 3 30 30 H 1.08999 * 109.47285 * 180.02562 * 1 2 3 31 31 H 1.09006 * 109.46539 * 300.00043 * 1 2 3 32 32 H 1.09000 * 109.64064 * 270.15619 * 7 5 3 33 33 H 1.09001 * 109.64401 * 30.57638 * 7 5 3 34 34 H 1.09002 * 111.06180 * 76.62653 * 8 7 5 35 35 H 1.09003 * 111.06158 * 200.61874 * 8 7 5 36 36 H 1.08995 * 113.53183 * 337.92039 * 13 12 5 37 37 H 1.09001 * 113.53290 * 207.27302 * 13 12 5 38 38 H 1.08999 * 109.47175 * 300.00220 * 17 15 14 39 39 H 1.08998 * 109.46734 * 60.00074 * 17 15 14 40 40 H 1.09000 * 109.47148 * 179.97438 * 17 15 14 41 41 H 1.08999 * 109.47308 * 184.99932 * 18 15 14 42 42 H 1.09000 * 109.47213 * 305.00489 * 18 15 14 43 43 H 1.08999 * 109.47119 * 300.00078 * 19 18 15 44 44 H 1.09000 * 109.46773 * 60.00250 * 19 18 15 45 45 H 0.96996 * 120.00939 * 180.02562 * 23 22 20 46 46 H 1.08998 * 113.53723 * 88.76696 * 28 14 13 47 47 H 1.08996 * 113.52960 * 219.42396 * 28 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4520 0.0000 0.0000 3 6 2.0614 1.1960 0.0000 4 8 1.4034 2.2093 0.0005 5 6 3.5664 1.2747 -0.0006 6 1 3.9676 0.3564 -0.4292 7 6 4.0040 2.4628 -0.8656 8 6 5.3469 3.0125 -0.3147 9 16 5.0494 2.9372 1.4999 10 8 4.2255 4.0256 1.8948 11 8 6.2741 2.6847 2.1750 12 6 4.0572 1.4080 1.4364 13 6 3.0187 1.2541 2.5388 14 7 3.3712 -0.1797 2.5844 15 6 3.4603 -0.6561 3.9712 16 1 4.2269 -0.0906 4.5010 17 6 2.1110 -0.4602 4.6654 18 6 3.8256 -2.1418 3.9777 19 6 5.2290 -2.3243 3.3960 20 6 5.5892 -3.7877 3.4030 21 1 4.8872 -4.5147 3.7838 22 6 6.8148 -4.1982 2.9233 23 7 7.6695 -3.3129 2.4591 24 14 7.2610 -6.0122 2.9313 25 1 6.8309 -6.6333 1.6529 26 1 8.7308 -6.1597 3.0836 27 1 6.5760 -6.6854 4.0638 28 6 4.7051 0.1803 2.0617 29 1 -0.3633 0.5139 -0.8899 30 1 -0.3634 -1.0276 0.0005 31 1 -0.3632 0.5139 0.8901 32 1 4.1376 2.1357 -1.8968 33 1 3.2459 3.2449 -0.8247 34 1 6.1801 2.3711 -0.6020 35 1 5.5139 4.0387 -0.6420 36 1 1.9982 1.4410 2.2045 37 1 3.2702 1.7935 3.4520 38 1 1.8502 0.5982 4.6608 39 1 1.3444 -1.0255 4.1356 40 1 2.1769 -0.8140 5.6943 41 1 3.8049 -2.5166 5.0010 42 1 3.1071 -2.6953 3.3733 43 1 5.2498 -1.9495 2.3727 44 1 5.9476 -1.7708 4.0004 45 1 8.5316 -3.6017 2.1213 46 1 5.4282 0.4194 2.8415 47 1 5.0914 -0.5285 1.3294 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001172497400.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:03:06 Heat of formation + Delta-G solvation = -138.341756 kcal Electronic energy + Delta-G solvation = -30771.674661 eV Core-core repulsion = 26661.458516 eV Total energy + Delta-G solvation = -4110.216145 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 345.149 amu Computer time = 0.66 seconds Orbital eigenvalues (eV) -42.56663 -40.96478 -38.32911 -37.83733 -37.20761 -36.88114 -35.65009 -34.40977 -31.57078 -30.40740 -28.65275 -27.71830 -27.20841 -26.49098 -24.00647 -23.65246 -22.32138 -21.61290 -20.55234 -19.65778 -18.83792 -18.42301 -18.06535 -17.91675 -17.58665 -17.40714 -16.84273 -16.57943 -16.33943 -15.67741 -15.56123 -15.21200 -14.90878 -14.55642 -14.42436 -14.33113 -14.18799 -14.01809 -13.68841 -13.42105 -13.30253 -13.23093 -13.15632 -13.08140 -13.05111 -12.85345 -12.82795 -12.73019 -12.43601 -12.20438 -12.03221 -11.97216 -11.71965 -11.69110 -11.52629 -11.48089 -11.18989 -11.02341 -10.88114 -10.43812 -9.89112 -8.12631 -6.21316 -1.08729 1.02272 1.36102 1.42164 1.42689 1.53120 1.67311 2.37493 2.45037 2.48899 2.77452 3.02646 3.20303 3.26702 3.36778 3.56130 3.80268 3.82613 3.89745 3.99683 4.09610 4.14819 4.26817 4.31990 4.35890 4.37958 4.42617 4.46081 4.67074 4.70976 4.75076 4.79951 4.83534 4.87789 4.94168 4.96937 5.05185 5.09466 5.31013 5.40126 5.45994 5.59816 5.78292 5.95415 6.04450 6.34998 6.70134 6.94412 7.46109 8.98207 Molecular weight = 345.15amu Principal moments of inertia in cm(-1) A = 0.011130 B = 0.004069 C = 0.003653 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2515.153745 B = 6880.443702 C = 7662.523445 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.029 3.971 2 O -0.348 6.348 3 C 0.484 3.516 4 O -0.527 6.527 5 C -0.051 4.051 6 H 0.143 0.857 7 C -0.116 4.116 8 C -0.536 4.536 9 S 2.373 3.627 10 O -0.953 6.953 11 O -0.963 6.963 12 C -0.552 4.552 13 C 0.036 3.964 14 N -0.440 5.440 15 C 0.039 3.961 16 H 0.039 0.961 17 C -0.138 4.138 18 C -0.087 4.087 19 C 0.019 3.981 20 C -0.540 4.540 21 H 0.051 0.949 22 C 0.006 3.994 23 N -0.926 5.926 24 Si 0.955 3.045 25 H -0.272 1.272 26 H -0.284 1.284 27 H -0.269 1.269 28 C 0.053 3.947 29 H 0.070 0.930 30 H 0.121 0.879 31 H 0.059 0.941 32 H 0.144 0.856 33 H 0.101 0.899 34 H 0.170 0.830 35 H 0.174 0.826 36 H 0.099 0.901 37 H 0.084 0.916 38 H 0.060 0.940 39 H 0.065 0.935 40 H 0.070 0.930 41 H 0.051 0.949 42 H 0.055 0.945 43 H 0.025 0.975 44 H -0.020 1.020 45 H 0.262 0.738 46 H 0.077 0.923 47 H 0.107 0.893 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.197 12.389 -9.090 19.013 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.064 4.064 2 O -0.263 6.263 3 C 0.328 3.672 4 O -0.417 6.417 5 C -0.072 4.072 6 H 0.161 0.839 7 C -0.154 4.154 8 C -0.670 4.670 9 S 2.559 3.441 10 O -0.950 6.950 11 O -0.960 6.960 12 C -0.641 4.641 13 C -0.094 4.094 14 N -0.163 5.163 15 C -0.070 4.070 16 H 0.057 0.943 17 C -0.195 4.195 18 C -0.124 4.124 19 C -0.018 4.018 20 C -0.578 4.578 21 H 0.070 0.930 22 C -0.192 4.192 23 N -0.566 5.566 24 Si 0.780 3.220 25 H -0.198 1.198 26 H -0.210 1.210 27 H -0.194 1.194 28 C -0.076 4.076 29 H 0.088 0.912 30 H 0.139 0.861 31 H 0.077 0.923 32 H 0.162 0.838 33 H 0.120 0.880 34 H 0.188 0.812 35 H 0.192 0.808 36 H 0.117 0.883 37 H 0.102 0.898 38 H 0.079 0.921 39 H 0.084 0.916 40 H 0.089 0.911 41 H 0.069 0.931 42 H 0.073 0.927 43 H 0.043 0.957 44 H -0.001 1.001 45 H 0.071 0.929 46 H 0.095 0.905 47 H 0.125 0.875 Dipole moment (debyes) X Y Z Total from point charges -11.424 12.735 -8.627 19.160 hybrid contribution 0.609 -0.953 0.324 1.176 sum -10.816 11.782 -8.303 18.021 Atomic orbital electron populations 1.23505 0.75118 1.05269 1.02508 1.86626 1.24571 1.32331 1.82761 1.23230 0.91624 0.81467 0.70913 1.90670 1.67409 1.36845 1.46798 1.20793 0.89105 1.05674 0.91587 0.83894 1.22286 0.94709 0.95950 1.02499 1.30422 1.05968 1.13362 1.17254 1.09609 0.75439 0.76545 0.82467 1.93589 1.69352 1.49344 1.82677 1.93608 1.42833 1.85262 1.74274 1.30635 1.12714 1.19418 1.01296 1.23378 0.98637 0.92353 0.95033 1.69234 1.15231 1.13425 1.18438 1.22419 0.98118 0.97242 0.89216 0.94303 1.21801 0.95295 1.01888 1.00531 1.21424 0.97866 0.93315 0.99844 1.19221 0.91512 0.94909 0.96148 1.21670 1.00953 0.94453 1.40735 0.93035 1.25806 0.96486 1.01750 0.95117 1.70062 1.08384 1.35262 1.42928 0.85607 0.77168 0.80489 0.78713 1.19780 1.20973 1.19378 1.23436 0.92645 0.91882 0.99669 0.91165 0.86121 0.92250 0.83782 0.88034 0.81191 0.80800 0.88284 0.89822 0.92062 0.91614 0.91093 0.93073 0.92651 0.95677 1.00121 0.92914 0.90456 0.87519 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.52 10.56 113.37 1.20 1.72 16 2 O -0.35 -8.41 10.57 -51.36 -0.54 -8.95 16 3 C 0.48 11.54 4.67 71.24 0.33 11.87 16 4 O -0.53 -14.21 15.20 21.98 0.33 -13.88 16 5 C -0.05 -1.03 2.92 -11.61 -0.03 -1.07 16 6 H 0.14 2.56 7.77 -2.39 -0.02 2.54 16 7 C -0.12 -1.56 5.82 31.47 0.18 -1.38 16 8 C -0.54 -6.76 7.47 72.74 0.54 -6.22 16 9 S 2.37 58.34 5.73 -56.49 -0.32 58.02 16 10 O -0.95 -28.35 18.04 -127.53 -2.30 -30.65 16 11 O -0.96 -31.42 17.22 -127.53 -2.20 -33.62 16 12 C -0.55 -14.05 1.38 -11.48 -0.02 -14.07 16 13 C 0.04 0.98 5.21 83.94 0.44 1.42 16 14 N -0.44 -13.95 6.10 -902.76 -5.51 -19.46 16 15 C 0.04 1.31 1.98 44.91 0.09 1.40 16 16 H 0.04 1.37 7.53 -2.39 -0.02 1.36 16 17 C -0.14 -3.65 9.09 71.98 0.65 -3.00 16 18 C -0.09 -3.53 4.83 30.60 0.15 -3.38 16 19 C 0.02 0.96 4.17 29.85 0.12 1.09 16 20 C -0.54 -30.38 9.11 25.60 0.23 -30.15 16 21 H 0.05 2.83 7.74 -2.91 -0.02 2.81 16 22 C 0.01 0.37 5.46 84.65 0.46 0.83 16 23 N -0.93 -54.80 13.29 21.45 0.28 -54.52 16 24 Si 0.95 43.97 29.54 68.60 2.03 46.00 16 25 H -0.27 -12.08 7.11 99.48 0.71 -11.38 16 26 H -0.28 -12.85 7.11 99.48 0.71 -12.14 16 27 H -0.27 -12.03 7.11 99.48 0.71 -11.33 16 28 C 0.05 1.73 4.68 83.95 0.39 2.12 16 29 H 0.07 1.10 8.13 -2.39 -0.02 1.08 16 30 H 0.12 1.65 8.14 -2.39 -0.02 1.63 16 31 H 0.06 1.09 8.13 -2.38 -0.02 1.07 16 32 H 0.14 1.00 8.14 -2.39 -0.02 0.98 16 33 H 0.10 1.53 6.91 -2.39 -0.02 1.52 16 34 H 0.17 1.49 8.14 -2.39 -0.02 1.47 16 35 H 0.17 1.22 8.14 -2.39 -0.02 1.20 16 36 H 0.10 2.67 6.01 -2.39 -0.01 2.66 16 37 H 0.08 2.24 7.62 -2.39 -0.02 2.22 16 38 H 0.06 1.44 7.01 -2.39 -0.02 1.43 16 39 H 0.06 1.70 8.14 -2.39 -0.02 1.68 16 40 H 0.07 1.74 8.14 -2.39 -0.02 1.72 16 41 H 0.05 2.05 8.14 -2.39 -0.02 2.03 16 42 H 0.05 2.27 8.14 -2.39 -0.02 2.25 16 43 H 0.03 1.29 5.10 -2.39 -0.01 1.28 16 44 H -0.02 -1.10 8.14 -2.39 -0.02 -1.12 16 45 H 0.26 14.64 8.31 -92.71 -0.77 13.87 16 46 H 0.08 2.83 6.90 -2.39 -0.02 2.81 16 47 H 0.11 3.69 6.62 -2.39 -0.02 3.68 16 Total: -1.00 -78.05 381.42 -2.51 -80.56 By element: Atomic # 1 Polarization: 14.35 SS G_CDS: 0.97 Total: 15.31 kcal Atomic # 6 Polarization: -43.56 SS G_CDS: 4.75 Total: -38.82 kcal Atomic # 7 Polarization: -68.75 SS G_CDS: -5.23 Total: -73.98 kcal Atomic # 8 Polarization: -82.39 SS G_CDS: -4.71 Total: -87.09 kcal Atomic # 14 Polarization: 43.97 SS G_CDS: 2.03 Total: 46.00 kcal Atomic # 16 Polarization: 58.34 SS G_CDS: -0.32 Total: 58.02 kcal Total: -78.05 -2.51 -80.56 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001172497400.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -57.779 kcal (2) G-P(sol) polarization free energy of solvation -78.049 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -135.827 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -2.514 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -80.563 kcal (6) G-S(sol) free energy of system = (1) + (5) -138.342 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.66 seconds