Wall clock time and date at job start Wed Apr 1 2020 03:18:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 O 1.42901 * 109.47598 * 2 1 4 4 C 1.34931 * 116.99997 * 179.97438 * 3 2 1 5 5 O 1.21677 * 120.00535 * 359.97438 * 4 3 2 6 6 C 1.41484 * 119.99981 * 179.97438 * 4 3 2 7 7 C 1.35204 * 126.13010 * 174.80567 * 6 4 3 8 8 N 1.37184 * 126.13438 * 0.02562 * 7 6 4 9 9 C 1.34777 * 120.00268 * 122.53491 * 8 7 6 10 10 O 1.21531 * 119.99750 * 5.06987 * 9 8 7 11 11 C 1.47815 * 120.00344 * 185.06937 * 9 8 7 12 12 C 1.39949 * 120.02481 * 359.97438 * 11 9 8 13 13 C 1.38322 * 120.35374 * 180.02562 * 12 11 9 14 14 C 1.37763 * 120.41563 * 0.02562 * 13 12 11 15 15 C 1.40754 * 120.04676 * 0.02562 * 14 13 12 16 16 C 1.41430 * 120.17750 * 179.97438 * 15 14 13 17 17 H 1.08001 * 119.99769 * 29.00287 * 16 15 14 18 18 C 1.39932 * 120.00785 * 208.99985 * 16 15 14 19 19 N 1.30837 * 119.99558 * 9.64059 * 18 16 15 20 20 Si 1.86799 * 120.00778 * 189.64248 * 18 16 15 21 21 H 1.48497 * 109.47182 * 89.99867 * 20 18 16 22 22 H 1.48500 * 109.47087 * 210.00125 * 20 18 16 23 23 H 1.48497 * 109.46482 * 329.99738 * 20 18 16 24 24 C 1.39030 * 120.02947 * 179.72913 * 11 9 8 25 25 C 1.51228 * 107.73723 * 180.02562 * 7 6 4 26 26 H 1.09004 * 110.17082 * 258.53795 * 25 7 6 27 27 C 1.53000 * 110.17252 * 136.81215 * 25 7 6 28 28 O 1.43940 * 105.87427 * 17.63524 * 25 7 6 29 29 C 1.44138 * 104.22437 * 331.70632 * 28 25 7 30 30 H 1.08998 * 109.47356 * 179.97438 * 1 2 3 31 31 H 1.09001 * 109.46808 * 59.99980 * 1 2 3 32 32 H 1.08993 * 109.47408 * 300.00848 * 1 2 3 33 33 H 1.09001 * 109.46808 * 120.00020 * 2 1 3 34 34 H 1.09002 * 109.47537 * 239.99440 * 2 1 3 35 35 H 0.97000 * 120.00125 * 302.53967 * 8 7 6 36 36 H 1.08004 * 119.82783 * 359.97438 * 12 11 9 37 37 H 1.07998 * 119.79173 * 180.02562 * 13 12 11 38 38 H 1.07999 * 119.97633 * 180.02562 * 14 13 12 39 39 H 0.97000 * 119.99827 * 180.02562 * 19 18 16 40 40 H 1.07999 * 120.20831 * 359.97438 * 24 11 9 41 41 H 1.09000 * 109.46536 * 60.00020 * 27 25 7 42 42 H 1.08993 * 109.47214 * 180.02562 * 27 25 7 43 43 H 1.08996 * 109.46793 * 300.00161 * 27 25 7 44 44 H 1.09005 * 110.33397 * 269.29708 * 29 28 25 45 45 H 1.08997 * 110.10108 * 147.44458 * 29 28 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0064 1.3472 0.0000 4 6 3.3441 1.5239 0.0005 5 8 4.0853 0.5590 0.0015 6 6 3.8850 2.8313 0.0000 7 6 5.1946 3.1522 0.0993 8 7 6.2373 2.2687 0.2182 9 6 7.2367 2.2801 -0.6860 10 8 7.2624 3.1317 -1.5526 11 6 8.3016 1.2568 -0.6237 12 6 8.2729 0.2762 0.3744 13 6 9.2661 -0.6843 0.4394 14 6 10.2951 -0.6867 -0.4766 15 6 10.3415 0.2923 -1.4869 16 6 11.3969 0.2928 -2.4284 17 1 11.8808 -0.6345 -2.6976 18 6 11.8141 1.4945 -3.0114 19 7 11.3641 2.6345 -2.5534 20 14 13.0134 1.4714 -4.4433 21 1 12.2585 1.4023 -5.7202 22 1 13.8355 2.7079 -4.4205 23 1 13.8997 0.2855 -4.3274 24 6 9.3298 1.2647 -1.5595 25 6 5.3041 4.6599 0.0559 26 1 5.6176 4.9856 -0.9359 27 6 6.3003 5.1472 1.1100 28 8 3.9860 5.1589 0.3485 29 6 3.1024 4.1199 -0.1176 30 1 -0.3634 -1.0276 -0.0005 31 1 -0.3633 0.5138 -0.8900 32 1 -0.3634 0.5139 0.8898 33 1 1.8933 -0.5138 0.8900 34 1 1.8934 -0.5139 -0.8899 35 1 6.2552 1.6356 0.9529 36 1 7.4713 0.2697 1.0982 37 1 9.2348 -1.4371 1.2131 38 1 11.0667 -1.4402 -0.4195 39 1 11.6530 3.4676 -2.9577 40 1 9.3537 2.0169 -2.3341 41 1 7.2801 4.7122 0.9123 42 1 6.3700 6.2341 1.0691 43 1 5.9603 4.8422 2.0996 44 1 2.8240 4.2971 -1.1564 45 1 2.2114 4.0770 0.5088 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001188687233.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:18:35 Heat of formation + Delta-G solvation = -123.926137 kcal Electronic energy + Delta-G solvation = -30127.721180 eV Core-core repulsion = 25882.686192 eV Total energy + Delta-G solvation = -4245.034988 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 345.145 amu Computer time = 0.76 seconds Orbital eigenvalues (eV) -41.30975 -40.06932 -39.11310 -37.21609 -36.78970 -35.01249 -33.76744 -32.50902 -31.52190 -31.43811 -30.00485 -29.53152 -26.10989 -25.32009 -25.07449 -23.35203 -22.95192 -21.42480 -21.08191 -19.97069 -19.59909 -18.23037 -17.72297 -17.20018 -16.83440 -16.22250 -16.08911 -16.05364 -15.25301 -14.78757 -14.68625 -14.47457 -14.31795 -14.12862 -13.81816 -13.48594 -13.30143 -13.04346 -12.84179 -12.74425 -12.62894 -12.26548 -12.17510 -11.92971 -11.81009 -11.73282 -11.67498 -11.23009 -11.17607 -11.05181 -10.79970 -10.61844 -10.56193 -10.50345 -10.20718 -9.79716 -9.63305 -9.37274 -9.32075 -8.60532 -7.76220 -7.56258 -6.80347 -4.50362 0.62294 1.98508 2.65190 2.73991 2.80978 3.05110 3.07684 3.07924 3.09865 3.55760 3.75873 3.88891 4.36317 4.45465 4.58581 4.72528 4.76412 4.87606 5.07440 5.13692 5.20338 5.28742 5.35327 5.46640 5.49869 5.53474 5.54256 5.66724 5.73994 5.77640 5.84904 5.98425 6.09090 6.17416 6.34487 6.45495 6.60191 6.63935 6.86287 6.90954 7.14494 7.26633 7.43774 7.59819 7.72427 7.73248 7.88556 8.07695 8.41651 8.50588 8.73612 8.76084 10.13820 Molecular weight = 345.15amu Principal moments of inertia in cm(-1) A = 0.012948 B = 0.002952 C = 0.002651 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2161.917736 B = 9481.646186 C =10561.039351 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C 0.061 3.939 3 O -0.353 6.353 4 C 0.529 3.471 5 O -0.500 6.500 6 C -0.274 4.274 7 C 0.231 3.769 8 N -0.662 5.662 9 C 0.574 3.426 10 O -0.522 6.522 11 C -0.133 4.133 12 C -0.205 4.205 13 C -0.100 4.100 14 C -0.200 4.200 15 C 0.096 3.904 16 C -0.459 4.459 17 H 0.081 0.919 18 C 0.070 3.930 19 N -0.795 5.795 20 Si 0.915 3.085 21 H -0.267 1.267 22 H -0.277 1.277 23 H -0.262 1.262 24 C -0.078 4.078 25 C 0.094 3.906 26 H 0.110 0.890 27 C -0.146 4.146 28 O -0.353 6.353 29 C 0.105 3.895 30 H 0.078 0.922 31 H 0.066 0.934 32 H 0.066 0.934 33 H 0.067 0.933 34 H 0.067 0.933 35 H 0.421 0.579 36 H 0.091 0.909 37 H 0.096 0.904 38 H 0.099 0.901 39 H 0.284 0.716 40 H 0.138 0.862 41 H 0.078 0.922 42 H 0.074 0.926 43 H 0.064 0.936 44 H 0.079 0.921 45 H 0.100 0.900 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.891 1.236 6.135 17.079 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C -0.013 4.013 3 O -0.270 6.270 4 C 0.377 3.623 5 O -0.389 6.389 6 C -0.279 4.279 7 C 0.131 3.869 8 N -0.312 5.312 9 C 0.368 3.632 10 O -0.397 6.397 11 C -0.136 4.136 12 C -0.225 4.225 13 C -0.118 4.118 14 C -0.220 4.220 15 C 0.094 3.906 16 C -0.489 4.489 17 H 0.099 0.901 18 C -0.147 4.147 19 N -0.420 5.420 20 Si 0.739 3.261 21 H -0.192 1.192 22 H -0.202 1.202 23 H -0.186 1.186 24 C -0.098 4.098 25 C 0.035 3.965 26 H 0.128 0.872 27 C -0.203 4.203 28 O -0.271 6.271 29 C 0.028 3.972 30 H 0.097 0.903 31 H 0.085 0.915 32 H 0.085 0.915 33 H 0.085 0.915 34 H 0.086 0.914 35 H 0.263 0.737 36 H 0.109 0.891 37 H 0.114 0.886 38 H 0.117 0.883 39 H 0.095 0.905 40 H 0.156 0.844 41 H 0.097 0.903 42 H 0.093 0.907 43 H 0.083 0.917 44 H 0.097 0.903 45 H 0.118 0.882 Dipole moment (debyes) X Y Z Total from point charges -15.629 1.967 5.557 16.704 hybrid contribution 0.493 -0.741 -0.257 0.927 sum -15.136 1.226 5.300 16.084 Atomic orbital electron populations 1.21799 0.92632 1.02910 1.03421 1.22621 0.95284 0.80811 1.02624 1.86171 1.24007 1.32097 1.84733 1.18683 0.80676 0.88918 0.74061 1.90958 1.59950 1.42220 1.45818 1.20724 0.95521 0.94343 1.17355 1.20989 0.87041 0.93011 0.85860 1.42891 1.21060 1.36374 1.30872 1.19086 0.80069 0.84724 0.79293 1.90734 1.75688 1.37930 1.35351 1.19265 0.96359 0.96989 1.01026 1.20387 1.01311 0.99300 1.01476 1.20454 0.95103 0.97676 0.98572 1.21219 0.99931 1.03462 0.97411 1.17610 0.91474 0.90501 0.91014 1.19581 1.14822 0.94347 1.20143 0.90076 1.25949 0.96752 0.94983 0.97056 1.69738 1.37332 0.98752 1.36155 0.86195 0.80041 0.78741 0.81087 1.19230 1.20177 1.18617 1.21729 0.90582 1.00031 0.97502 1.22043 0.85338 0.87407 1.01741 0.87229 1.21821 0.98130 1.02643 0.97694 1.89200 1.15066 1.39569 1.83290 1.21750 0.93029 0.81643 1.00766 0.90329 0.91506 0.91541 0.91485 0.91415 0.73715 0.89070 0.88602 0.88331 0.90504 0.84408 0.90322 0.90698 0.91712 0.90302 0.88240 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.04 10.28 37.16 0.38 -0.66 16 2 C 0.06 0.62 6.10 37.16 0.23 0.85 16 3 O -0.35 -4.38 9.91 -41.12 -0.41 -4.79 16 4 C 0.53 7.89 7.71 31.97 0.25 8.13 16 5 O -0.50 -8.77 15.59 -19.40 -0.30 -9.07 16 6 C -0.27 -3.92 6.09 -104.21 -0.63 -4.55 16 7 C 0.23 3.61 5.56 -81.02 -0.45 3.16 16 8 N -0.66 -11.36 4.18 -8.82 -0.04 -11.39 16 9 C 0.57 12.13 7.71 -12.34 -0.10 12.03 16 10 O -0.52 -12.16 15.46 5.34 0.08 -12.08 16 11 C -0.13 -3.06 5.87 -105.05 -0.62 -3.68 16 12 C -0.20 -4.26 9.55 -38.91 -0.37 -4.63 16 13 C -0.10 -2.09 10.01 -39.72 -0.40 -2.49 16 14 C -0.20 -4.64 9.78 -38.80 -0.38 -5.02 16 15 C 0.10 2.49 5.55 -106.87 -0.59 1.90 16 16 C -0.46 -11.81 9.06 -37.73 -0.34 -12.15 16 17 H 0.08 1.98 7.86 -52.49 -0.41 1.57 16 18 C 0.07 1.74 5.27 -17.34 -0.09 1.65 16 19 N -0.79 -20.49 10.82 55.55 0.60 -19.89 16 20 Si 0.91 18.54 29.57 -169.99 -5.03 13.51 16 21 H -0.27 -5.39 7.11 56.52 0.40 -4.99 16 22 H -0.28 -5.50 7.11 56.52 0.40 -5.10 16 23 H -0.26 -5.20 7.11 56.52 0.40 -4.80 16 24 C -0.08 -2.03 8.20 -38.43 -0.32 -2.34 16 25 C 0.09 1.34 3.47 -27.62 -0.10 1.24 16 26 H 0.11 1.69 7.69 -51.93 -0.40 1.29 16 27 C -0.15 -1.88 9.53 37.16 0.35 -1.52 16 28 O -0.35 -4.69 11.46 -35.23 -0.40 -5.09 16 29 C 0.11 1.24 7.40 36.26 0.27 1.51 16 30 H 0.08 0.41 8.14 -51.93 -0.42 -0.01 16 31 H 0.07 0.45 8.14 -51.93 -0.42 0.03 16 32 H 0.07 0.43 8.14 -51.93 -0.42 0.01 16 33 H 0.07 0.67 8.13 -51.93 -0.42 0.25 16 34 H 0.07 0.72 8.13 -51.93 -0.42 0.30 16 35 H 0.42 6.64 6.63 -40.82 -0.27 6.37 16 36 H 0.09 1.62 6.39 -52.48 -0.34 1.29 16 37 H 0.10 1.71 8.06 -52.49 -0.42 1.28 16 38 H 0.10 2.11 8.06 -52.49 -0.42 1.69 16 39 H 0.28 6.74 8.30 -40.82 -0.34 6.41 16 40 H 0.14 3.84 5.80 -52.49 -0.30 3.54 16 41 H 0.08 1.14 8.14 -51.93 -0.42 0.71 16 42 H 0.07 0.85 8.14 -51.93 -0.42 0.43 16 43 H 0.06 0.76 8.14 -51.93 -0.42 0.33 16 44 H 0.08 0.85 8.14 -51.93 -0.42 0.42 16 45 H 0.10 0.97 8.14 -51.93 -0.42 0.55 16 LS Contribution 385.63 15.07 5.81 5.81 Total: -1.00 -29.49 385.63 -8.52 -38.01 By element: Atomic # 1 Polarization: 17.49 SS G_CDS: -5.93 Total: 11.56 kcal Atomic # 6 Polarization: -3.67 SS G_CDS: -2.90 Total: -6.58 kcal Atomic # 7 Polarization: -31.85 SS G_CDS: 0.56 Total: -31.29 kcal Atomic # 8 Polarization: -30.00 SS G_CDS: -1.03 Total: -31.03 kcal Atomic # 14 Polarization: 18.54 SS G_CDS: -5.03 Total: 13.51 kcal Total LS contribution 5.81 Total: 5.81 kcal Total: -29.49 -8.52 -38.01 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001188687233.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -85.920 kcal (2) G-P(sol) polarization free energy of solvation -29.490 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -115.410 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.516 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.007 kcal (6) G-S(sol) free energy of system = (1) + (5) -123.926 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.76 seconds