Wall clock time and date at job start Wed Apr 1 2020 03:18:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 O 1.42901 * 109.47598 * 2 1 4 4 C 1.34931 * 116.99997 * 179.97438 * 3 2 1 5 5 O 1.21677 * 120.00535 * 359.97438 * 4 3 2 6 6 C 1.41484 * 119.99981 * 179.97438 * 4 3 2 7 7 C 1.35204 * 126.13010 * 174.80567 * 6 4 3 8 8 N 1.37184 * 126.13438 * 0.02562 * 7 6 4 9 9 C 1.34777 * 120.00268 * 122.53491 * 8 7 6 10 10 O 1.21531 * 119.99750 * 5.06987 * 9 8 7 11 11 C 1.47815 * 120.00344 * 185.06937 * 9 8 7 12 12 C 1.39949 * 120.02481 * 359.97438 * 11 9 8 13 13 C 1.38322 * 120.35374 * 180.02562 * 12 11 9 14 14 C 1.37763 * 120.41563 * 0.02562 * 13 12 11 15 15 C 1.40754 * 120.04676 * 0.02562 * 14 13 12 16 16 C 1.41430 * 120.17750 * 179.97438 * 15 14 13 17 17 H 1.08001 * 119.99769 * 29.00287 * 16 15 14 18 18 C 1.39932 * 120.00785 * 208.99985 * 16 15 14 19 19 N 1.30837 * 119.99558 * 9.64059 * 18 16 15 20 20 Si 1.86799 * 120.00778 * 189.64248 * 18 16 15 21 21 H 1.48497 * 109.47182 * 89.99867 * 20 18 16 22 22 H 1.48500 * 109.47087 * 210.00125 * 20 18 16 23 23 H 1.48497 * 109.46482 * 329.99738 * 20 18 16 24 24 C 1.39030 * 120.02947 * 179.72913 * 11 9 8 25 25 C 1.51228 * 107.73723 * 180.02562 * 7 6 4 26 26 H 1.09004 * 110.17082 * 258.53795 * 25 7 6 27 27 C 1.53000 * 110.17252 * 136.81215 * 25 7 6 28 28 O 1.43940 * 105.87427 * 17.63524 * 25 7 6 29 29 C 1.44138 * 104.22437 * 331.70632 * 28 25 7 30 30 H 1.08998 * 109.47356 * 179.97438 * 1 2 3 31 31 H 1.09001 * 109.46808 * 59.99980 * 1 2 3 32 32 H 1.08993 * 109.47408 * 300.00848 * 1 2 3 33 33 H 1.09001 * 109.46808 * 120.00020 * 2 1 3 34 34 H 1.09002 * 109.47537 * 239.99440 * 2 1 3 35 35 H 0.97000 * 120.00125 * 302.53967 * 8 7 6 36 36 H 1.08004 * 119.82783 * 359.97438 * 12 11 9 37 37 H 1.07998 * 119.79173 * 180.02562 * 13 12 11 38 38 H 1.07999 * 119.97633 * 180.02562 * 14 13 12 39 39 H 0.97000 * 119.99827 * 180.02562 * 19 18 16 40 40 H 1.07999 * 120.20831 * 359.97438 * 24 11 9 41 41 H 1.09000 * 109.46536 * 60.00020 * 27 25 7 42 42 H 1.08993 * 109.47214 * 180.02562 * 27 25 7 43 43 H 1.08996 * 109.46793 * 300.00161 * 27 25 7 44 44 H 1.09005 * 110.33397 * 269.29708 * 29 28 25 45 45 H 1.08997 * 110.10108 * 147.44458 * 29 28 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0064 1.3472 0.0000 4 6 3.3441 1.5239 0.0005 5 8 4.0853 0.5590 0.0015 6 6 3.8850 2.8313 0.0000 7 6 5.1946 3.1522 0.0993 8 7 6.2373 2.2687 0.2182 9 6 7.2367 2.2801 -0.6860 10 8 7.2624 3.1317 -1.5526 11 6 8.3016 1.2568 -0.6237 12 6 8.2729 0.2762 0.3744 13 6 9.2661 -0.6843 0.4394 14 6 10.2951 -0.6867 -0.4766 15 6 10.3415 0.2923 -1.4869 16 6 11.3969 0.2928 -2.4284 17 1 11.8808 -0.6345 -2.6976 18 6 11.8141 1.4945 -3.0114 19 7 11.3641 2.6345 -2.5534 20 14 13.0134 1.4714 -4.4433 21 1 12.2585 1.4023 -5.7202 22 1 13.8355 2.7079 -4.4205 23 1 13.8997 0.2855 -4.3274 24 6 9.3298 1.2647 -1.5595 25 6 5.3041 4.6599 0.0559 26 1 5.6176 4.9856 -0.9359 27 6 6.3003 5.1472 1.1100 28 8 3.9860 5.1589 0.3485 29 6 3.1024 4.1199 -0.1176 30 1 -0.3634 -1.0276 -0.0005 31 1 -0.3633 0.5138 -0.8900 32 1 -0.3634 0.5139 0.8898 33 1 1.8933 -0.5138 0.8900 34 1 1.8934 -0.5139 -0.8899 35 1 6.2552 1.6356 0.9529 36 1 7.4713 0.2697 1.0982 37 1 9.2348 -1.4371 1.2131 38 1 11.0667 -1.4402 -0.4195 39 1 11.6530 3.4676 -2.9577 40 1 9.3537 2.0169 -2.3341 41 1 7.2801 4.7122 0.9123 42 1 6.3700 6.2341 1.0691 43 1 5.9603 4.8422 2.0996 44 1 2.8240 4.2971 -1.1564 45 1 2.2114 4.0770 0.5088 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001188687233.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:18:34 Heat of formation + Delta-G solvation = -140.280475 kcal Electronic energy + Delta-G solvation = -30128.430357 eV Core-core repulsion = 25882.686192 eV Total energy + Delta-G solvation = -4245.744165 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 345.145 amu Computer time = 0.81 seconds Orbital eigenvalues (eV) -42.53531 -41.33320 -40.49442 -38.94487 -37.94136 -36.45986 -35.57627 -33.58097 -32.83628 -32.29862 -31.62370 -31.32117 -27.49446 -26.95349 -26.09070 -24.89121 -23.81554 -22.92354 -22.60819 -21.42454 -20.98528 -19.74388 -19.12447 -18.41261 -17.92160 -17.77066 -17.30562 -17.28613 -16.89615 -16.50185 -16.07816 -15.81207 -15.62829 -15.19605 -15.15642 -14.91356 -14.64107 -14.44612 -14.35693 -13.98007 -13.59049 -13.53735 -13.25778 -13.01708 -12.98485 -12.94123 -12.85210 -12.81980 -12.59764 -12.49333 -12.29980 -12.22579 -12.01041 -11.69681 -11.56061 -11.51185 -11.19633 -11.12734 -10.76328 -9.88376 -9.53652 -9.40461 -8.62797 -6.43223 -0.62248 0.23334 0.96193 1.37251 1.44996 1.51022 1.58206 1.62656 1.72727 1.89737 2.19476 2.68437 2.75850 3.16319 3.35422 3.62484 3.78238 3.84120 4.00155 4.04593 4.08737 4.20052 4.28092 4.34809 4.36605 4.43726 4.49876 4.56180 4.74617 4.79954 4.82556 4.87110 4.93320 5.02754 5.04606 5.09335 5.11801 5.24370 5.31109 5.36766 5.42658 5.45016 5.75099 5.83080 5.99372 6.11371 6.25091 6.54612 6.58062 6.85393 6.88803 6.91949 8.33084 Molecular weight = 345.15amu Principal moments of inertia in cm(-1) A = 0.012948 B = 0.002952 C = 0.002651 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2161.917736 B = 9481.646186 C =10561.039351 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 C 0.051 3.949 3 O -0.344 6.344 4 C 0.529 3.471 5 O -0.529 6.529 6 C -0.257 4.257 7 C 0.200 3.800 8 N -0.646 5.646 9 C 0.577 3.423 10 O -0.553 6.553 11 C -0.142 4.142 12 C -0.189 4.189 13 C -0.098 4.098 14 C -0.204 4.204 15 C 0.066 3.934 16 C -0.495 4.495 17 H 0.084 0.916 18 C 0.027 3.973 19 N -0.832 5.832 20 Si 0.985 3.015 21 H -0.266 1.266 22 H -0.270 1.270 23 H -0.253 1.253 24 C -0.113 4.113 25 C 0.099 3.901 26 H 0.093 0.907 27 C -0.142 4.142 28 O -0.351 6.351 29 C 0.104 3.896 30 H 0.098 0.902 31 H 0.069 0.931 32 H 0.073 0.927 33 H 0.068 0.932 34 H 0.059 0.941 35 H 0.428 0.572 36 H 0.128 0.872 37 H 0.139 0.861 38 H 0.113 0.887 39 H 0.286 0.714 40 H 0.106 0.894 41 H 0.057 0.943 42 H 0.088 0.912 43 H 0.078 0.922 44 H 0.094 0.906 45 H 0.129 0.871 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -18.009 0.531 7.552 19.536 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.200 4.200 2 C -0.023 4.023 3 O -0.261 6.261 4 C 0.377 3.623 5 O -0.421 6.421 6 C -0.262 4.262 7 C 0.101 3.899 8 N -0.296 5.296 9 C 0.370 3.630 10 O -0.431 6.431 11 C -0.146 4.146 12 C -0.209 4.209 13 C -0.116 4.116 14 C -0.224 4.224 15 C 0.063 3.937 16 C -0.525 4.525 17 H 0.102 0.898 18 C -0.187 4.187 19 N -0.459 5.459 20 Si 0.806 3.194 21 H -0.191 1.191 22 H -0.194 1.194 23 H -0.176 1.176 24 C -0.134 4.134 25 C 0.039 3.961 26 H 0.111 0.889 27 C -0.199 4.199 28 O -0.270 6.270 29 C 0.027 3.973 30 H 0.117 0.883 31 H 0.088 0.912 32 H 0.092 0.908 33 H 0.086 0.914 34 H 0.078 0.922 35 H 0.270 0.730 36 H 0.145 0.855 37 H 0.157 0.843 38 H 0.131 0.869 39 H 0.097 0.903 40 H 0.124 0.876 41 H 0.076 0.924 42 H 0.107 0.893 43 H 0.097 0.903 44 H 0.112 0.888 45 H 0.146 0.854 Dipole moment (debyes) X Y Z Total from point charges -17.806 1.254 7.016 19.179 hybrid contribution 0.880 -0.625 -0.554 1.213 sum -16.926 0.629 6.461 18.128 Atomic orbital electron populations 1.21815 0.89821 1.04430 1.03924 1.22944 0.97434 0.79564 1.02347 1.86180 1.22330 1.33605 1.83936 1.18822 0.81405 0.88670 0.73381 1.90941 1.60855 1.43185 1.47148 1.21034 0.95314 0.95320 1.14529 1.21206 0.87028 0.93519 0.88169 1.42467 1.20461 1.36561 1.30067 1.18824 0.80568 0.84004 0.79639 1.90711 1.76569 1.38936 1.36861 1.19532 0.96220 0.97953 1.00855 1.20830 1.01770 0.97675 1.00602 1.20910 0.93828 0.98214 0.98632 1.21512 1.00979 1.02822 0.97089 1.17954 0.91796 0.91596 0.92304 1.19848 1.15835 0.94987 1.21804 0.89827 1.26820 0.98317 0.94262 0.99283 1.69847 1.38978 0.99357 1.37675 0.85142 0.77766 0.79139 0.77326 1.19137 1.19427 1.17593 1.21516 0.92565 1.00685 0.98589 1.21904 0.86192 0.86614 1.01348 0.88934 1.21784 0.96688 1.03439 0.97977 1.89199 1.14616 1.39839 1.83316 1.22017 0.93102 0.79748 1.02385 0.88316 0.91222 0.90781 0.91355 0.92208 0.72963 0.85452 0.84339 0.86928 0.90345 0.87563 0.92425 0.89266 0.90262 0.88784 0.85363 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.57 10.28 71.98 0.74 -0.83 16 2 C 0.05 0.93 6.10 71.98 0.44 1.37 16 3 O -0.34 -7.76 9.91 -58.47 -0.58 -8.34 16 4 C 0.53 14.89 7.71 68.62 0.53 15.42 16 5 O -0.53 -17.96 15.59 19.26 0.30 -17.66 16 6 C -0.26 -6.92 6.09 -19.60 -0.12 -7.04 16 7 C 0.20 6.10 5.56 41.19 0.23 6.33 16 8 N -0.65 -21.99 4.18 -300.11 -1.25 -23.24 16 9 C 0.58 25.00 7.71 86.78 0.67 25.67 16 10 O -0.55 -27.09 15.46 -3.81 -0.06 -27.15 16 11 C -0.14 -6.69 5.87 -20.14 -0.12 -6.81 16 12 C -0.19 -7.59 9.55 22.70 0.22 -7.38 16 13 C -0.10 -3.90 10.01 22.18 0.22 -3.67 16 14 C -0.20 -9.42 9.78 22.77 0.22 -9.20 16 15 C 0.07 3.52 5.55 -21.32 -0.12 3.40 16 16 C -0.49 -26.53 9.06 23.47 0.21 -26.32 16 17 H 0.08 4.24 7.86 -2.91 -0.02 4.21 16 18 C 0.03 1.38 5.27 85.25 0.45 1.83 16 19 N -0.83 -45.42 10.82 21.82 0.24 -45.18 16 20 Si 0.99 39.20 29.57 68.60 2.03 41.23 16 21 H -0.27 -10.44 7.11 99.48 0.71 -9.73 16 22 H -0.27 -10.28 7.11 99.48 0.71 -9.58 16 23 H -0.25 -9.52 7.11 99.48 0.71 -8.82 16 24 C -0.11 -6.16 8.20 23.02 0.19 -5.97 16 25 C 0.10 2.77 3.47 30.02 0.10 2.88 16 26 H 0.09 2.93 7.69 -2.39 -0.02 2.91 16 27 C -0.14 -3.59 9.53 71.98 0.69 -2.90 16 28 O -0.35 -8.64 11.46 -148.98 -1.71 -10.35 16 29 C 0.10 2.18 7.40 71.40 0.53 2.71 16 30 H 0.10 0.72 8.14 -2.39 -0.02 0.70 16 31 H 0.07 0.75 8.14 -2.39 -0.02 0.73 16 32 H 0.07 0.72 8.14 -2.39 -0.02 0.70 16 33 H 0.07 1.24 8.13 -2.39 -0.02 1.22 16 34 H 0.06 1.20 8.13 -2.39 -0.02 1.18 16 35 H 0.43 12.95 6.63 -92.71 -0.61 12.34 16 36 H 0.13 4.15 6.39 -2.91 -0.02 4.13 16 37 H 0.14 4.34 8.06 -2.91 -0.02 4.31 16 38 H 0.11 4.76 8.06 -2.91 -0.02 4.73 16 39 H 0.29 14.39 8.30 -92.71 -0.77 13.62 16 40 H 0.11 6.40 5.80 -2.91 -0.02 6.39 16 41 H 0.06 1.70 8.14 -2.39 -0.02 1.68 16 42 H 0.09 1.96 8.14 -2.39 -0.02 1.94 16 43 H 0.08 1.74 8.14 -2.39 -0.02 1.72 16 44 H 0.09 1.76 8.14 -2.38 -0.02 1.74 16 45 H 0.13 2.01 8.14 -2.39 -0.02 1.99 16 Total: -1.00 -67.55 385.63 4.46 -63.08 By element: Atomic # 1 Polarization: 37.69 SS G_CDS: 0.42 Total: 38.11 kcal Atomic # 6 Polarization: -15.59 SS G_CDS: 5.08 Total: -10.51 kcal Atomic # 7 Polarization: -67.40 SS G_CDS: -1.02 Total: -68.42 kcal Atomic # 8 Polarization: -61.45 SS G_CDS: -2.05 Total: -63.49 kcal Atomic # 14 Polarization: 39.20 SS G_CDS: 2.03 Total: 41.23 kcal Total: -67.55 4.46 -63.08 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001188687233.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -77.199 kcal (2) G-P(sol) polarization free energy of solvation -67.546 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -144.745 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.465 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.081 kcal (6) G-S(sol) free energy of system = (1) + (5) -140.280 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.82 seconds