Wall clock time and date at job start Wed Apr 1 2020 02:57:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.30994 * 1 3 3 C 1.50694 * 120.00388 * 2 1 4 4 O 1.42898 * 109.47357 * 134.99500 * 3 2 1 5 5 C 1.42906 * 113.99824 * 180.02562 * 4 3 2 6 6 C 1.53006 * 109.46752 * 180.02562 * 5 4 3 7 7 H 1.09001 * 110.03479 * 53.55229 * 6 5 4 8 8 C 1.54346 * 110.05507 * 292.04816 * 6 5 4 9 9 C 1.54916 * 104.20527 * 217.18730 * 8 6 5 10 10 C 1.54959 * 102.78452 * 37.77405 * 9 8 6 11 11 C 1.53561 * 110.05018 * 174.99956 * 6 5 4 12 12 C 1.52942 * 109.92549 * 238.31431 * 11 6 5 13 13 N 1.47236 * 108.36367 * 172.97100 * 12 11 6 14 14 S 1.65595 * 121.02042 * 130.03923 * 13 12 11 15 15 O 1.42095 * 106.40618 * 23.56168 * 14 13 12 16 16 O 1.42101 * 106.39997 * 156.48581 * 14 13 12 17 17 C 1.76205 * 107.22032 * 270.02299 * 14 13 12 18 18 H 1.08007 * 119.99612 * 0.02562 * 17 14 13 19 19 C 1.37872 * 120.00197 * 179.97438 * 17 14 13 20 20 N 1.31511 * 120.00066 * 179.97438 * 19 17 14 21 21 Si 1.86805 * 120.00121 * 0.02562 * 19 17 14 22 22 H 1.48503 * 109.47184 * 89.99759 * 21 19 17 23 23 H 1.48496 * 109.46874 * 209.99913 * 21 19 17 24 24 H 1.48505 * 109.46853 * 329.99583 * 21 19 17 25 25 C 1.47144 * 117.95686 * 310.06393 * 13 12 11 26 26 C 1.53294 * 108.49125 * 50.85218 * 25 13 12 27 27 O 1.42542 * 110.16068 * 359.97141 * 11 6 5 28 28 H 1.08005 * 120.00413 * 180.02562 * 1 2 3 29 29 H 1.08004 * 119.99937 * 0.02562 * 1 2 3 30 30 H 1.08004 * 119.99937 * 179.97438 * 2 1 3 31 31 H 1.09008 * 109.47126 * 14.99884 * 3 2 1 32 32 H 1.09002 * 109.47402 * 255.00115 * 3 2 1 33 33 H 1.08993 * 109.47732 * 60.00254 * 5 4 3 34 34 H 1.09000 * 109.47141 * 299.99893 * 5 4 3 35 35 H 1.09009 * 110.48646 * 335.86990 * 8 6 5 36 36 H 1.08997 * 110.48670 * 98.50471 * 8 6 5 37 37 H 1.09006 * 110.74769 * 279.45075 * 9 8 6 38 38 H 1.09001 * 110.91007 * 156.17163 * 9 8 6 39 39 H 1.08999 * 110.50328 * 203.65967 * 10 9 8 40 40 H 1.08998 * 110.49986 * 80.97004 * 10 9 8 41 41 H 1.09002 * 109.68684 * 292.68833 * 12 11 6 42 42 H 1.08997 * 109.68952 * 53.25138 * 12 11 6 43 43 H 0.97001 * 120.00287 * 180.02562 * 20 19 17 44 44 H 1.09006 * 109.63406 * 291.15384 * 25 13 12 45 45 H 1.09000 * 109.80222 * 170.64946 * 25 13 12 46 46 H 1.08995 * 109.51039 * 187.44211 * 26 25 13 47 47 H 1.09000 * 109.55039 * 67.31622 * 26 25 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3099 0.0000 0.0000 3 6 2.0635 1.3050 0.0000 4 8 3.1266 1.2412 0.9527 5 6 3.9077 2.4353 1.0329 6 6 5.0106 2.2540 2.0778 7 1 5.5864 1.3543 1.8607 8 6 4.3925 2.1606 3.4890 9 6 5.3979 2.9142 4.3951 10 6 5.8516 4.0930 3.4974 11 6 5.9339 3.4809 2.0869 12 6 7.3728 3.0526 1.7946 13 7 8.1957 4.2641 1.6434 14 16 9.6213 4.4358 2.4684 15 8 10.0660 3.1224 2.7788 16 8 10.4018 5.3668 1.7313 17 6 9.2443 5.2097 4.0059 18 1 8.2237 5.4723 4.2423 19 6 10.2520 5.4790 4.9075 20 7 9.9707 6.0571 6.0547 21 14 12.0172 5.0242 4.4988 22 1 12.6732 6.1611 3.8043 23 1 12.7525 4.7190 5.7523 24 1 12.0289 3.8309 3.6149 25 6 7.7123 5.3179 0.7373 26 6 6.2588 5.6423 1.1005 27 8 5.4967 4.4321 1.1195 28 1 -0.5401 -0.9353 0.0004 29 1 -0.5400 0.9353 -0.0004 30 1 1.8500 -0.9353 0.0004 31 1 1.3855 2.1161 0.2660 32 1 2.4755 1.4867 -0.9927 33 1 3.2678 3.2694 1.3204 34 1 4.3580 2.6407 0.0617 35 1 3.4181 2.6488 3.5118 36 1 4.3056 1.1193 3.7993 37 1 6.2433 2.2747 4.6492 38 1 4.9089 3.2818 5.2972 39 1 6.8290 4.4586 3.8124 40 1 5.1160 4.8969 3.5223 41 1 7.7522 2.4518 2.6211 42 1 7.4028 2.4711 0.8732 43 1 10.6797 6.2469 6.6889 44 1 7.7625 4.9661 -0.2933 45 1 8.3261 6.2116 0.8495 46 1 5.8417 6.3236 0.3590 47 1 6.2244 6.1097 2.0846 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001192957220.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 02:57:59 Heat of formation + Delta-G solvation = -147.167240 kcal Electronic energy + Delta-G solvation = -30354.569469 eV Core-core repulsion = 26243.970623 eV Total energy + Delta-G solvation = -4110.598846 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 345.149 amu Computer time = 0.79 seconds Orbital eigenvalues (eV) -40.29846 -38.11085 -36.25829 -35.72405 -34.52995 -34.35974 -34.00248 -33.08293 -30.68018 -30.01400 -27.09659 -26.47278 -26.22597 -25.23752 -23.62359 -22.33860 -20.49065 -20.10640 -18.97580 -18.54403 -17.59685 -16.99177 -16.76516 -16.47253 -16.17008 -15.45191 -15.32649 -15.15692 -14.98219 -14.50146 -14.30967 -14.04540 -13.80016 -13.57701 -13.32558 -13.14349 -12.90776 -12.83664 -12.59050 -12.10868 -11.90269 -11.79938 -11.42894 -11.32894 -11.27444 -11.06053 -11.04650 -10.86923 -10.68272 -10.65872 -10.56853 -10.49193 -10.35245 -10.13553 -9.94628 -9.86590 -9.74948 -9.44131 -9.25940 -9.03495 -8.20462 -6.85430 -5.40320 1.88359 1.91065 3.03220 3.13350 3.22793 3.62369 3.86388 3.90724 4.05440 4.53259 4.64518 4.68295 4.78919 4.86950 5.02759 5.14536 5.17843 5.20709 5.27449 5.29947 5.37995 5.43041 5.46421 5.52241 5.57994 5.62610 5.68175 5.76602 5.79557 5.84071 5.88314 5.96041 6.01151 6.03629 6.14674 6.20221 6.27903 6.28275 6.36008 6.39519 6.50375 6.55994 6.63230 7.17879 7.20998 7.40832 7.43094 8.16003 8.65419 10.26061 Molecular weight = 345.15amu Principal moments of inertia in cm(-1) A = 0.021804 B = 0.003161 C = 0.003032 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1283.870497 B = 8854.700945 C = 9233.622672 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.186 4.186 2 C -0.147 4.147 3 C 0.089 3.911 4 O -0.388 6.388 5 C 0.082 3.918 6 C -0.075 4.075 7 H 0.091 0.909 8 C -0.110 4.110 9 C -0.125 4.125 10 C -0.159 4.159 11 C 0.112 3.888 12 C 0.110 3.890 13 N -1.003 6.003 14 S 2.672 3.328 15 O -1.004 7.004 16 O -1.008 7.008 17 C -1.015 5.015 18 H 0.126 0.874 19 C 0.156 3.844 20 N -0.820 5.820 21 Si 0.798 3.202 22 H -0.247 1.247 23 H -0.254 1.254 24 H -0.220 1.220 25 C 0.093 3.907 26 C 0.046 3.954 27 O -0.372 6.372 28 H 0.102 0.898 29 H 0.097 0.903 30 H 0.116 0.884 31 H 0.052 0.948 32 H 0.057 0.943 33 H 0.054 0.946 34 H 0.056 0.944 35 H 0.066 0.934 36 H 0.069 0.931 37 H 0.073 0.927 38 H 0.069 0.931 39 H 0.097 0.903 40 H 0.072 0.928 41 H 0.101 0.899 42 H 0.067 0.933 43 H 0.281 0.719 44 H 0.067 0.933 45 H 0.099 0.901 46 H 0.099 0.901 47 H 0.063 0.937 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.386 -6.046 -8.995 18.820 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.223 4.223 2 C -0.165 4.165 3 C 0.013 3.987 4 O -0.307 6.307 5 C 0.006 3.994 6 C -0.094 4.094 7 H 0.109 0.891 8 C -0.148 4.148 9 C -0.162 4.162 10 C -0.196 4.196 11 C 0.071 3.929 12 C -0.016 4.016 13 N -0.838 5.838 14 S 2.776 3.224 15 O -0.994 6.994 16 O -0.998 6.998 17 C -1.150 5.150 18 H 0.143 0.857 19 C -0.064 4.064 20 N -0.449 5.449 21 Si 0.618 3.382 22 H -0.171 1.171 23 H -0.178 1.178 24 H -0.142 1.142 25 C -0.033 4.033 26 C -0.032 4.032 27 O -0.291 6.291 28 H 0.121 0.879 29 H 0.115 0.885 30 H 0.134 0.866 31 H 0.070 0.930 32 H 0.075 0.925 33 H 0.072 0.928 34 H 0.075 0.925 35 H 0.085 0.915 36 H 0.088 0.912 37 H 0.092 0.908 38 H 0.088 0.912 39 H 0.115 0.885 40 H 0.091 0.909 41 H 0.119 0.881 42 H 0.085 0.915 43 H 0.091 0.909 44 H 0.085 0.915 45 H 0.118 0.882 46 H 0.117 0.883 47 H 0.081 0.919 Dipole moment (debyes) X Y Z Total from point charges -14.600 -6.446 -9.184 18.413 hybrid contribution 0.541 0.590 0.462 0.924 sum -14.058 -5.856 -8.722 17.550 Atomic orbital electron populations 1.23819 0.95615 1.02143 1.00726 1.22793 0.95620 0.98401 0.99671 1.21471 0.89132 0.95451 0.92670 1.87873 1.44584 1.38008 1.60263 1.22309 0.92072 0.86124 0.98885 1.21718 0.95146 0.96867 0.95641 0.89068 1.22392 0.98486 1.00754 0.93157 1.22472 0.98990 0.96990 0.97774 1.23155 1.04158 0.98454 0.93851 1.22176 0.93001 0.88799 0.88899 1.21906 0.89979 0.86976 1.02735 1.57863 1.41428 1.25014 1.59540 1.01577 0.71017 0.74165 0.75677 1.93459 1.79061 1.41173 1.85705 1.93400 1.67318 1.64661 1.74419 1.30549 1.05113 1.57041 1.22261 0.85656 1.24389 0.98865 0.89869 0.93293 1.69978 1.34882 1.33408 1.06637 0.87911 0.85101 0.83124 0.82017 1.17055 1.17845 1.14246 1.21894 0.95855 0.91870 0.93676 1.22978 0.91218 0.86726 1.02292 1.87805 1.55876 1.27217 1.58228 0.87941 0.88498 0.86644 0.93008 0.92507 0.92787 0.92538 0.91536 0.91186 0.90798 0.91244 0.88504 0.90923 0.88110 0.91460 0.90864 0.91490 0.88234 0.88330 0.91872 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.19 -1.36 14.31 29.02 0.42 -0.94 16 2 C -0.15 -1.29 9.89 -36.03 -0.36 -1.64 16 3 C 0.09 0.87 6.35 36.00 0.23 1.09 16 4 O -0.39 -4.74 10.18 -35.23 -0.36 -5.09 16 5 C 0.08 1.00 4.27 37.16 0.16 1.16 16 6 C -0.07 -0.97 2.84 -89.62 -0.25 -1.23 16 7 H 0.09 1.17 7.66 -51.93 -0.40 0.77 16 8 C -0.11 -1.37 6.23 -25.01 -0.16 -1.53 16 9 C -0.12 -1.75 6.91 -24.69 -0.17 -1.92 16 10 C -0.16 -2.51 4.71 -25.19 -0.12 -2.63 16 11 C 0.11 1.67 0.96 -89.85 -0.09 1.59 16 12 C 0.11 1.87 4.88 -3.67 -0.02 1.85 16 13 N -1.00 -19.31 2.87 -113.20 -0.32 -19.63 16 14 S 2.67 65.49 4.20 -107.50 -0.45 65.03 16 15 O -1.00 -26.36 14.84 -57.17 -0.85 -27.21 16 16 O -1.01 -26.39 15.64 -57.17 -0.89 -27.28 16 17 C -1.02 -27.01 9.79 30.60 0.30 -26.71 16 18 H 0.13 3.30 6.03 -52.48 -0.32 2.99 16 19 C 0.16 4.33 5.47 -17.82 -0.10 4.23 16 20 N -0.82 -22.92 13.96 55.43 0.77 -22.15 16 21 Si 0.80 20.22 26.54 -169.99 -4.51 15.71 16 22 H -0.25 -6.13 7.11 56.52 0.40 -5.73 16 23 H -0.25 -5.93 7.11 56.52 0.40 -5.53 16 24 H -0.22 -5.71 5.61 56.52 0.32 -5.40 16 25 C 0.09 1.50 6.56 -3.54 -0.02 1.48 16 26 C 0.05 0.64 6.71 37.31 0.25 0.89 16 27 O -0.37 -5.34 8.31 -35.23 -0.29 -5.64 16 28 H 0.10 0.61 8.06 -52.48 -0.42 0.19 16 29 H 0.10 0.63 7.90 -52.48 -0.41 0.22 16 30 H 0.12 0.99 8.06 -52.48 -0.42 0.56 16 31 H 0.05 0.46 7.86 -51.92 -0.41 0.05 16 32 H 0.06 0.51 8.14 -51.93 -0.42 0.08 16 33 H 0.05 0.66 7.91 -51.93 -0.41 0.25 16 34 H 0.06 0.70 7.65 -51.93 -0.40 0.30 16 35 H 0.07 0.80 7.76 -51.92 -0.40 0.40 16 36 H 0.07 0.82 8.14 -51.93 -0.42 0.39 16 37 H 0.07 1.08 8.14 -51.93 -0.42 0.66 16 38 H 0.07 0.91 8.14 -51.93 -0.42 0.49 16 39 H 0.10 1.83 4.80 -51.93 -0.25 1.58 16 40 H 0.07 1.09 7.70 -51.93 -0.40 0.69 16 41 H 0.10 1.79 7.25 -51.93 -0.38 1.41 16 42 H 0.07 1.03 8.14 -51.93 -0.42 0.61 16 43 H 0.28 7.17 8.31 -40.82 -0.34 6.83 16 44 H 0.07 0.96 8.14 -51.93 -0.42 0.53 16 45 H 0.10 1.65 7.25 -51.93 -0.38 1.27 16 46 H 0.10 1.07 8.14 -51.93 -0.42 0.64 16 47 H 0.06 0.93 6.89 -51.93 -0.36 0.57 16 LS Contribution 374.31 15.07 5.64 5.64 Total: -1.00 -31.37 374.31 -8.73 -40.10 By element: Atomic # 1 Polarization: 12.37 SS G_CDS: -7.53 Total: 4.84 kcal Atomic # 6 Polarization: -24.39 SS G_CDS: 0.07 Total: -24.31 kcal Atomic # 7 Polarization: -42.23 SS G_CDS: 0.45 Total: -41.78 kcal Atomic # 8 Polarization: -62.83 SS G_CDS: -2.39 Total: -65.22 kcal Atomic # 14 Polarization: 20.22 SS G_CDS: -4.51 Total: 15.71 kcal Atomic # 16 Polarization: 65.49 SS G_CDS: -0.45 Total: 65.03 kcal Total LS contribution 5.64 Total: 5.64 kcal Total: -31.37 -8.73 -40.10 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001192957220.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -107.068 kcal (2) G-P(sol) polarization free energy of solvation -31.371 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -138.440 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.728 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.099 kcal (6) G-S(sol) free energy of system = (1) + (5) -147.167 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.79 seconds